HEADER IMMUNE SYSTEM 22-NOV-17 5YUP TITLE CRYSTAL STRUCTURE OF THE FAB FRAGMENT OF FVIIA ANTIBODY MAB4F5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: THE HEAVY CHAIN OF THE FAB FRAGMENT OF FVIIA ANTIBODY COMPND 3 MAB4F5; COMPND 4 CHAIN: H; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: THE LIGHT CHAIN OF THE FAB FRAGMENT OF FVIIA ANTIBODY COMPND 7 MAB4F5; COMPND 8 CHAIN: L SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 7 ORGANISM_COMMON: MOUSE; SOURCE 8 ORGANISM_TAXID: 10090 KEYWDS FVIIA, ANTIBODIES, FAB4F5, INHIBITION, COAGULATION, STRUCTURAL KEYWDS 2 PROTEIN, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR L.G.JIANG,E.PERSSON,M.D.HUANG REVDAT 3 22-NOV-23 5YUP 1 REMARK REVDAT 2 01-JAN-20 5YUP 1 JRNL REVDAT 1 19-JUN-19 5YUP 0 JRNL AUTH L.G.JIANG,X.XIE,J.LI,E.PERSSON,M.D.HUANG JRNL TITL CRYSTAL STRUCTURE, EPITOPE, AND FUNCTIONAL IMPACT OF AN JRNL TITL 2 ANTIBODY AGAINST A SUPERACTIVE FVIIA PROVIDE INSIGHTS INTO JRNL TITL 3 ALLOSTERIC MECHANISM. JRNL REF RES PRACT THROMB HAEMOST V. 3 412 2019 JRNL REFN ISSN 2475-0379 JRNL PMID 31294329 JRNL DOI 10.1002/RTH2.12211 REMARK 2 REMARK 2 RESOLUTION. 1.81 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.81 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 70.82 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 43047 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 2067 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 70.8742 - 4.4641 1.00 2841 156 0.1906 0.2259 REMARK 3 2 4.4641 - 3.5433 1.00 2770 122 0.1788 0.2126 REMARK 3 3 3.5433 - 3.0954 1.00 2749 142 0.2049 0.2215 REMARK 3 4 3.0954 - 2.8124 1.00 2770 120 0.2214 0.3323 REMARK 3 5 2.8124 - 2.6108 1.00 2704 146 0.2256 0.2853 REMARK 3 6 2.6108 - 2.4569 1.00 2727 135 0.2267 0.2682 REMARK 3 7 2.4569 - 2.3338 1.00 2693 169 0.2327 0.2857 REMARK 3 8 2.3338 - 2.2322 1.00 2727 142 0.2299 0.2746 REMARK 3 9 2.2322 - 2.1463 1.00 2727 113 0.2116 0.2600 REMARK 3 10 2.1463 - 2.0722 1.00 2683 157 0.2269 0.2663 REMARK 3 11 2.0722 - 2.0074 1.00 2698 134 0.2211 0.2409 REMARK 3 12 2.0074 - 1.9500 1.00 2747 133 0.2354 0.2731 REMARK 3 13 1.9500 - 1.8987 1.00 2692 141 0.2364 0.2805 REMARK 3 14 1.8987 - 1.8524 1.00 2709 133 0.2577 0.3146 REMARK 3 15 1.8524 - 1.8103 1.00 2743 124 0.2642 0.3098 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.110 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 3419 REMARK 3 ANGLE : 1.310 4650 REMARK 3 CHIRALITY : 0.052 523 REMARK 3 PLANARITY : 0.006 596 REMARK 3 DIHEDRAL : 13.095 1216 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5YUP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 04-DEC-17. REMARK 100 THE DEPOSITION ID IS D_1300005949. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-DEC-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43048 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.810 REMARK 200 RESOLUTION RANGE LOW (A) : 70.820 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 15.00 REMARK 200 R MERGE (I) : 0.08200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 25.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.81 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.84 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.80000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2BRR AND 2R4R REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.3M AMMONIUM SULFATE, 100MM TRIS-HCL REMARK 280 PH 7.4, 5% PEG 400, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z,-X,-Y REMARK 290 7555 -Z,-X,Y REMARK 290 8555 -Z,X,-Y REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z,-X REMARK 290 11555 Y,-Z,-X REMARK 290 12555 -Y,-Z,X REMARK 290 13555 X+1/2,Y+1/2,Z+1/2 REMARK 290 14555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 15555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 16555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 17555 Z+1/2,X+1/2,Y+1/2 REMARK 290 18555 Z+1/2,-X+1/2,-Y+1/2 REMARK 290 19555 -Z+1/2,-X+1/2,Y+1/2 REMARK 290 20555 -Z+1/2,X+1/2,-Y+1/2 REMARK 290 21555 Y+1/2,Z+1/2,X+1/2 REMARK 290 22555 -Y+1/2,Z+1/2,-X+1/2 REMARK 290 23555 Y+1/2,-Z+1/2,-X+1/2 REMARK 290 24555 -Y+1/2,-Z+1/2,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 70.82000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 70.82000 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 70.82000 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 70.82000 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 70.82000 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 70.82000 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 70.82000 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 70.82000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 70.82000 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 70.82000 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 70.82000 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 70.82000 REMARK 290 SMTRY1 17 0.000000 0.000000 1.000000 70.82000 REMARK 290 SMTRY2 17 1.000000 0.000000 0.000000 70.82000 REMARK 290 SMTRY3 17 0.000000 1.000000 0.000000 70.82000 REMARK 290 SMTRY1 18 0.000000 0.000000 1.000000 70.82000 REMARK 290 SMTRY2 18 -1.000000 0.000000 0.000000 70.82000 REMARK 290 SMTRY3 18 0.000000 -1.000000 0.000000 70.82000 REMARK 290 SMTRY1 19 0.000000 0.000000 -1.000000 70.82000 REMARK 290 SMTRY2 19 -1.000000 0.000000 0.000000 70.82000 REMARK 290 SMTRY3 19 0.000000 1.000000 0.000000 70.82000 REMARK 290 SMTRY1 20 0.000000 0.000000 -1.000000 70.82000 REMARK 290 SMTRY2 20 1.000000 0.000000 0.000000 70.82000 REMARK 290 SMTRY3 20 0.000000 -1.000000 0.000000 70.82000 REMARK 290 SMTRY1 21 0.000000 1.000000 0.000000 70.82000 REMARK 290 SMTRY2 21 0.000000 0.000000 1.000000 70.82000 REMARK 290 SMTRY3 21 1.000000 0.000000 0.000000 70.82000 REMARK 290 SMTRY1 22 0.000000 -1.000000 0.000000 70.82000 REMARK 290 SMTRY2 22 0.000000 0.000000 1.000000 70.82000 REMARK 290 SMTRY3 22 -1.000000 0.000000 0.000000 70.82000 REMARK 290 SMTRY1 23 0.000000 1.000000 0.000000 70.82000 REMARK 290 SMTRY2 23 0.000000 0.000000 -1.000000 70.82000 REMARK 290 SMTRY3 23 -1.000000 0.000000 0.000000 70.82000 REMARK 290 SMTRY1 24 0.000000 -1.000000 0.000000 70.82000 REMARK 290 SMTRY2 24 0.000000 0.000000 -1.000000 70.82000 REMARK 290 SMTRY3 24 1.000000 0.000000 0.000000 70.82000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3640 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19290 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -31.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS H 219 SG CYS L 215 1.77 REMARK 500 NH1 ARG H 103 NE1 TRP L 51 1.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG H 56 C - N - CA ANGL. DEV. = 19.7 DEGREES REMARK 500 ASP H 99 CB - CA - C ANGL. DEV. = 12.7 DEGREES REMARK 500 TYR H 102 CB - CA - C ANGL. DEV. = 12.3 DEGREES REMARK 500 GLY L 32 N - CA - C ANGL. DEV. = -24.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER H 55 107.73 138.80 REMARK 500 ASP H 99 -82.06 -103.21 REMARK 500 SER H 160 19.34 55.43 REMARK 500 SER H 164 -33.23 -140.19 REMARK 500 LEU L 33 19.53 55.95 REMARK 500 ALA L 52 -43.18 73.24 REMARK 500 THR L 203 -76.34 -106.40 REMARK 500 GLU L 214 -161.46 -161.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 THR H 136 ASN H 137 146.79 REMARK 500 GLY L 30 ILE L 31 -130.38 REMARK 500 ILE L 31 GLY L 32 -113.91 REMARK 500 REMARK 500 REMARK: NULL DBREF 5YUP H 1 219 PDB 5YUP 5YUP 1 219 DBREF 5YUP L 1 215 PDB 5YUP 5YUP 1 215 SEQRES 1 H 219 GLU VAL LYS LEU VAL GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 H 219 PRO GLY GLY SER ARG LYS LEU SER CYS ALA ALA SER GLY SEQRES 3 H 219 PHE THR PHE SER ASP TYR GLY MET ALA TRP VAL ARG GLN SEQRES 4 H 219 ALA PRO GLY LYS GLY PRO GLU TRP ILE ALA PHE ILE SER SEQRES 5 H 219 ASN LEU SER ARG ILE TYR TYR ALA ASP THR VAL THR GLY SEQRES 6 H 219 ARG PHE THR ILE SER ARG GLU ASN ASP LYS ASN THR LEU SEQRES 7 H 219 PHE LEU GLU MET SER SER LEU ARG SER GLU ASP SER ALA SEQRES 8 H 219 ILE TYR TYR CYS THR ARG ASP ASP GLY TYR TYR ARG VAL SEQRES 9 H 219 ASP TYR TRP GLY GLN GLY ALA THR LEU THR VAL SER SER SEQRES 10 H 219 ALA LYS THR THR PRO PRO SER VAL TYR PRO LEU ALA PRO SEQRES 11 H 219 GLY SER ALA ALA GLN THR ASN SER MET VAL THR LEU GLY SEQRES 12 H 219 CYS LEU VAL LYS GLY TYR PHE PRO GLU PRO VAL THR VAL SEQRES 13 H 219 THR TRP ASN SER GLY SER LEU SER SER GLY VAL HIS THR SEQRES 14 H 219 PHE PRO ALA VAL LEU GLN SER ASP LEU TYR THR LEU SER SEQRES 15 H 219 SER SER VAL THR VAL PRO SER SER THR TRP PRO SER GLU SEQRES 16 H 219 THR VAL THR CYS ASN VAL ALA HIS PRO ALA SER SER THR SEQRES 17 H 219 LYS VAL ASP LYS LYS ILE VAL PRO ARG ASP CYS SEQRES 1 L 215 ASP ILE VAL MET THR GLN SER HIS LYS PHE LEU SER THR SEQRES 2 L 215 SER VAL GLY ASN ARG VAL SER ILE THR CYS LYS ALA SER SEQRES 3 L 215 GLN ASP VAL GLY ILE GLY LEU VAL SER TRP TYR GLN GLN SEQRES 4 L 215 LYS PRO GLY GLN SER PRO LYS LEU LEU ILE HIS TRP ALA SEQRES 5 L 215 SER THR ARG HIS THR GLY VAL PRO ASP ARG PHE THR GLY SEQRES 6 L 215 SER GLY SER GLY THR ASP PHE THR LEU THR ILE ASN ASN SEQRES 7 L 215 VAL GLN SER GLU ASP LEU ALA THR TYR PHE CYS GLN GLN SEQRES 8 L 215 PHE SER ASN TYR PRO LEU THR PHE GLY SER GLY THR ARG SEQRES 9 L 215 LEU GLU ILE LYS ARG ALA ASP ALA ALA PRO THR VAL SER SEQRES 10 L 215 ILE PHE PRO PRO SER SER GLU GLN LEU THR SER GLY GLY SEQRES 11 L 215 ALA SER VAL VAL CYS PHE LEU ASN ASN PHE TYR PRO LYS SEQRES 12 L 215 ASP ILE ASN VAL LYS TRP LYS ILE ASP GLY SER GLU ARG SEQRES 13 L 215 GLN ASN GLY VAL LEU ASN SER TRP THR ASP GLN ASP SER SEQRES 14 L 215 LYS ASP SER THR TYR SER MET SER SER THR LEU THR LEU SEQRES 15 L 215 THR LYS ASP GLU TYR GLU ARG HIS ASN SER TYR THR CYS SEQRES 16 L 215 GLU ALA THR HIS LYS THR SER THR SER PRO ILE VAL LYS SEQRES 17 L 215 SER PHE ASN ARG ASP GLU CYS FORMUL 3 HOH *131(H2 O) HELIX 1 AA1 THR H 28 TYR H 32 5 5 HELIX 2 AA2 ASP H 61 THR H 64 5 4 HELIX 3 AA3 ASN H 73 LYS H 75 5 3 HELIX 4 AA4 ARG H 86 SER H 90 5 5 HELIX 5 AA5 GLY H 131 GLN H 135 5 5 HELIX 6 AA6 SER H 160 SER H 162 5 3 HELIX 7 AA7 PRO H 204 SER H 207 5 4 HELIX 8 AA8 GLN L 80 LEU L 84 5 5 HELIX 9 AA9 SER L 122 SER L 128 1 7 HELIX 10 AB1 LYS L 184 GLU L 188 1 5 SHEET 1 AA1 4 LYS H 3 SER H 7 0 SHEET 2 AA1 4 ARG H 18 SER H 25 -1 O SER H 21 N SER H 7 SHEET 3 AA1 4 THR H 77 MET H 82 -1 O MET H 82 N ARG H 18 SHEET 4 AA1 4 PHE H 67 GLU H 72 -1 N THR H 68 O GLU H 81 SHEET 1 AA2 6 GLY H 10 VAL H 12 0 SHEET 2 AA2 6 ALA H 111 VAL H 115 1 O THR H 114 N GLY H 10 SHEET 3 AA2 6 ALA H 91 ASP H 98 -1 N TYR H 93 O ALA H 111 SHEET 4 AA2 6 MET H 34 GLN H 39 -1 N VAL H 37 O TYR H 94 SHEET 5 AA2 6 GLU H 46 ILE H 51 -1 O ILE H 51 N MET H 34 SHEET 6 AA2 6 ILE H 57 TYR H 59 -1 O TYR H 58 N PHE H 50 SHEET 1 AA3 4 GLY H 10 VAL H 12 0 SHEET 2 AA3 4 ALA H 111 VAL H 115 1 O THR H 114 N GLY H 10 SHEET 3 AA3 4 ALA H 91 ASP H 98 -1 N TYR H 93 O ALA H 111 SHEET 4 AA3 4 VAL H 104 TRP H 107 -1 O TYR H 106 N ARG H 97 SHEET 1 AA4 4 SER H 124 LEU H 128 0 SHEET 2 AA4 4 MET H 139 TYR H 149 -1 O LYS H 147 N SER H 124 SHEET 3 AA4 4 LEU H 178 PRO H 188 -1 O LEU H 181 N VAL H 146 SHEET 4 AA4 4 VAL H 167 THR H 169 -1 N HIS H 168 O SER H 184 SHEET 1 AA5 4 SER H 124 LEU H 128 0 SHEET 2 AA5 4 MET H 139 TYR H 149 -1 O LYS H 147 N SER H 124 SHEET 3 AA5 4 LEU H 178 PRO H 188 -1 O LEU H 181 N VAL H 146 SHEET 4 AA5 4 VAL H 173 GLN H 175 -1 N GLN H 175 O LEU H 178 SHEET 1 AA6 3 THR H 155 TRP H 158 0 SHEET 2 AA6 3 THR H 198 HIS H 203 -1 O ASN H 200 N THR H 157 SHEET 3 AA6 3 THR H 208 LYS H 213 -1 O THR H 208 N HIS H 203 SHEET 1 AA7 4 MET L 4 THR L 5 0 SHEET 2 AA7 4 VAL L 19 ALA L 25 -1 O LYS L 24 N THR L 5 SHEET 3 AA7 4 ASP L 71 ILE L 76 -1 O LEU L 74 N ILE L 21 SHEET 4 AA7 4 PHE L 63 SER L 68 -1 N THR L 64 O THR L 75 SHEET 1 AA8 6 PHE L 10 THR L 13 0 SHEET 2 AA8 6 THR L 103 ILE L 107 1 O GLU L 106 N LEU L 11 SHEET 3 AA8 6 ALA L 85 GLN L 91 -1 N ALA L 85 O LEU L 105 SHEET 4 AA8 6 VAL L 34 GLN L 39 -1 N SER L 35 O GLN L 90 SHEET 5 AA8 6 LYS L 46 HIS L 50 -1 O LEU L 48 N TRP L 36 SHEET 6 AA8 6 THR L 54 ARG L 55 -1 O THR L 54 N HIS L 50 SHEET 1 AA9 4 PHE L 10 THR L 13 0 SHEET 2 AA9 4 THR L 103 ILE L 107 1 O GLU L 106 N LEU L 11 SHEET 3 AA9 4 ALA L 85 GLN L 91 -1 N ALA L 85 O LEU L 105 SHEET 4 AA9 4 THR L 98 PHE L 99 -1 O THR L 98 N GLN L 91 SHEET 1 AB1 4 THR L 115 PHE L 119 0 SHEET 2 AB1 4 GLY L 130 PHE L 140 -1 O VAL L 134 N PHE L 119 SHEET 3 AB1 4 TYR L 174 THR L 183 -1 O LEU L 180 N VAL L 133 SHEET 4 AB1 4 VAL L 160 TRP L 164 -1 N SER L 163 O SER L 177 SHEET 1 AB2 4 SER L 154 ARG L 156 0 SHEET 2 AB2 4 ASN L 146 ILE L 151 -1 N ILE L 151 O SER L 154 SHEET 3 AB2 4 SER L 192 THR L 198 -1 O GLU L 196 N LYS L 148 SHEET 4 AB2 4 ILE L 206 ASN L 211 -1 O ILE L 206 N ALA L 197 SSBOND 1 CYS H 22 CYS H 95 1555 1555 2.06 SSBOND 2 CYS H 144 CYS H 199 1555 1555 2.05 SSBOND 3 CYS L 23 CYS L 89 1555 1555 2.09 SSBOND 4 CYS L 135 CYS L 195 1555 1555 2.04 CISPEP 1 PHE H 150 PRO H 151 0 -4.30 CISPEP 2 GLU H 152 PRO H 153 0 3.80 CISPEP 3 TRP H 192 PRO H 193 0 9.01 CISPEP 4 TYR L 95 PRO L 96 0 -1.26 CISPEP 5 TYR L 141 PRO L 142 0 6.11 CRYST1 141.640 141.640 141.640 90.00 90.00 90.00 I 2 3 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007060 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007060 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007060 0.00000