HEADER DNA BINDING PROTEIN/DNA 23-NOV-17 5YUV TITLE DNA POLYMERASE IV - DNA TERNARY COMPLEX 5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA POLYMERASE IV; COMPND 3 CHAIN: F, A; COMPND 4 SYNONYM: POL IV,TRANSLESION SYNTHESIS POLYMERASE IV,TSL POLYMERASE COMPND 5 IV; COMPND 6 EC: 2.7.7.7; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: DTN1; COMPND 10 CHAIN: G, B, C; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: DTN2; COMPND 14 CHAIN: H; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI K-12; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K-12; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 SYNTHETIC: YES; SOURCE 9 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI K-12; SOURCE 10 ORGANISM_TAXID: 83333; SOURCE 11 MOL_ID: 3; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI K-12; SOURCE 14 ORGANISM_TAXID: 83333 KEYWDS DNA POLYMERASE, DNA BINDING PROTEIN, DNA BINDING PROTEIN-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.KOTTUR,D.T.NAIR REVDAT 3 22-NOV-23 5YUV 1 LINK REVDAT 2 25-DEC-19 5YUV 1 REMARK REVDAT 1 03-OCT-18 5YUV 0 JRNL AUTH J.KOTTUR,D.T.NAIR JRNL TITL PYROPHOSPHATE HYDROLYSIS IS AN INTRINSIC AND CRITICAL STEP JRNL TITL 2 OF THE DNA SYNTHESIS REACTION JRNL REF NUCLEIC ACIDS RES. V. 46 5875 2018 JRNL REFN ESSN 1362-4962 JRNL PMID 29850882 JRNL DOI 10.1093/NAR/GKY402 REMARK 2 REMARK 2 RESOLUTION. 2.06 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.06 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.48 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.060 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 65803 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 3297 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.4857 - 6.4072 0.99 3982 241 0.1429 0.1466 REMARK 3 2 6.4072 - 5.0879 1.00 4073 221 0.1592 0.1823 REMARK 3 3 5.0879 - 4.4454 1.00 4055 232 0.1381 0.1866 REMARK 3 4 4.4454 - 4.0393 1.00 4097 179 0.1372 0.1880 REMARK 3 5 4.0393 - 3.7499 1.00 4008 233 0.1550 0.2092 REMARK 3 6 3.7499 - 3.5289 1.00 4104 219 0.1611 0.2125 REMARK 3 7 3.5289 - 3.3523 1.00 4032 201 0.1653 0.1963 REMARK 3 8 3.3523 - 3.2064 1.00 4131 188 0.1793 0.2405 REMARK 3 9 3.2064 - 3.0830 1.00 4067 199 0.1949 0.2672 REMARK 3 10 3.0830 - 2.9766 1.00 4025 217 0.1946 0.2833 REMARK 3 11 2.9766 - 2.8836 1.00 4096 200 0.2009 0.2415 REMARK 3 12 2.8836 - 2.8011 1.00 4060 199 0.2066 0.2499 REMARK 3 13 2.8011 - 2.7274 1.00 4070 254 0.2137 0.2656 REMARK 3 14 2.7274 - 2.6609 1.00 4062 235 0.2117 0.2790 REMARK 3 15 2.6609 - 2.6004 1.00 3997 215 0.2207 0.2551 REMARK 3 16 2.6004 - 2.5451 1.00 4139 231 0.2257 0.2529 REMARK 3 17 2.5451 - 2.4942 1.00 4039 233 0.2298 0.3146 REMARK 3 18 2.4942 - 2.4471 1.00 4110 207 0.2351 0.2664 REMARK 3 19 2.4471 - 2.4034 1.00 4027 199 0.2354 0.2860 REMARK 3 20 2.4034 - 2.3627 1.00 4036 209 0.2424 0.3039 REMARK 3 21 2.3627 - 2.3245 1.00 4165 222 0.2489 0.3442 REMARK 3 22 2.3245 - 2.2888 1.00 3927 255 0.2464 0.2865 REMARK 3 23 2.2888 - 2.2551 1.00 4051 214 0.2595 0.3616 REMARK 3 24 2.2551 - 2.2234 1.00 4066 227 0.2696 0.3094 REMARK 3 25 2.2234 - 2.1933 1.00 4064 204 0.2640 0.4061 REMARK 3 26 2.1933 - 2.1648 0.99 3983 190 0.2696 0.3011 REMARK 3 27 2.1648 - 2.1378 0.99 4082 218 0.2693 0.3214 REMARK 3 28 2.1378 - 2.1120 0.99 3988 190 0.2849 0.3336 REMARK 3 29 2.1120 - 2.0875 0.97 4087 184 0.2987 0.3305 REMARK 3 30 2.0875 - 2.0640 0.95 3831 188 0.2805 0.3126 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.270 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.210 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 7206 REMARK 3 ANGLE : 1.178 10060 REMARK 3 CHIRALITY : 0.058 1111 REMARK 3 PLANARITY : 0.007 1037 REMARK 3 DIHEDRAL : 21.639 4187 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN F AND ( RESID 0:10 OR RESID 76:164 ) ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.0980 -14.4940 -69.8835 REMARK 3 T TENSOR REMARK 3 T11: 0.1829 T22: 0.2149 REMARK 3 T33: 0.3538 T12: -0.0006 REMARK 3 T13: 0.0477 T23: -0.0239 REMARK 3 L TENSOR REMARK 3 L11: 1.0898 L22: 1.5162 REMARK 3 L33: 1.7088 L12: 0.0592 REMARK 3 L13: 0.2658 L23: -0.0174 REMARK 3 S TENSOR REMARK 3 S11: -0.0393 S12: 0.2120 S13: -0.1427 REMARK 3 S21: -0.2515 S22: 0.0104 S23: -0.4512 REMARK 3 S31: 0.1131 S32: 0.0969 S33: 0.0330 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN F AND RESID 11:75 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.3403 2.7227 -69.0531 REMARK 3 T TENSOR REMARK 3 T11: 0.3056 T22: 0.2529 REMARK 3 T33: 0.4098 T12: 0.0313 REMARK 3 T13: -0.0888 T23: -0.0038 REMARK 3 L TENSOR REMARK 3 L11: 1.0840 L22: 1.7566 REMARK 3 L33: 0.9713 L12: -0.2203 REMARK 3 L13: 0.4492 L23: 0.3610 REMARK 3 S TENSOR REMARK 3 S11: -0.0112 S12: 0.2048 S13: 0.5309 REMARK 3 S21: -0.2825 S22: -0.2284 S23: 0.0530 REMARK 3 S31: -0.3068 S32: -0.1932 S33: 0.1739 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN F AND RESID 165:229 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.6648 -15.0875 -44.1913 REMARK 3 T TENSOR REMARK 3 T11: 0.3029 T22: 0.2300 REMARK 3 T33: 0.3835 T12: 0.0529 REMARK 3 T13: -0.0697 T23: -0.0483 REMARK 3 L TENSOR REMARK 3 L11: 1.5973 L22: 1.6621 REMARK 3 L33: 1.0411 L12: -0.4839 REMARK 3 L13: 0.1862 L23: 0.0140 REMARK 3 S TENSOR REMARK 3 S11: -0.2283 S12: -0.1696 S13: -0.0055 REMARK 3 S21: 0.5404 S22: 0.0703 S23: -0.2004 REMARK 3 S31: -0.1392 S32: -0.0720 S33: 0.1474 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN F AND RESID 241:341 ) REMARK 3 ORIGIN FOR THE GROUP (A): -30.4210 -19.4256 -63.7888 REMARK 3 T TENSOR REMARK 3 T11: 0.1212 T22: 0.4887 REMARK 3 T33: 0.3162 T12: -0.0659 REMARK 3 T13: 0.0367 T23: -0.1739 REMARK 3 L TENSOR REMARK 3 L11: 1.2822 L22: 1.5970 REMARK 3 L33: 1.2423 L12: 0.2450 REMARK 3 L13: -0.1528 L23: -0.3391 REMARK 3 S TENSOR REMARK 3 S11: -0.1206 S12: -0.2940 S13: 0.0991 REMARK 3 S21: -0.1244 S22: 0.0526 S23: 0.2519 REMARK 3 S31: 0.2083 S32: -0.5026 S33: 0.0679 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: ( CHAIN A AND ( RESID 0:10 OR RESID 76:164 ) ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.1658 -8.8096 3.4566 REMARK 3 T TENSOR REMARK 3 T11: 0.4503 T22: 0.3297 REMARK 3 T33: 0.2760 T12: 0.0544 REMARK 3 T13: -0.0787 T23: -0.0003 REMARK 3 L TENSOR REMARK 3 L11: 1.3148 L22: 1.4177 REMARK 3 L33: 1.1002 L12: 0.0916 REMARK 3 L13: 0.1833 L23: 0.1900 REMARK 3 S TENSOR REMARK 3 S11: 0.0006 S12: -0.1244 S13: -0.0685 REMARK 3 S21: 0.2477 S22: 0.0787 S23: -0.2249 REMARK 3 S31: 0.2118 S32: 0.2032 S33: -0.0567 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: ( CHAIN A AND RESID 11:75 ) REMARK 3 ORIGIN FOR THE GROUP (A): -25.7042 8.1741 -14.2488 REMARK 3 T TENSOR REMARK 3 T11: 0.5133 T22: 0.2796 REMARK 3 T33: 0.2851 T12: -0.0693 REMARK 3 T13: 0.0046 T23: -0.0045 REMARK 3 L TENSOR REMARK 3 L11: 0.7541 L22: 1.3896 REMARK 3 L33: 1.3737 L12: 0.0554 REMARK 3 L13: -0.2710 L23: 0.2343 REMARK 3 S TENSOR REMARK 3 S11: 0.0407 S12: 0.0998 S13: 0.2447 REMARK 3 S21: -0.0918 S22: 0.0203 S23: -0.1119 REMARK 3 S31: -0.6332 S32: 0.3558 S33: -0.0792 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: ( CHAIN A AND RESID 165:229 ) REMARK 3 ORIGIN FOR THE GROUP (A): -52.8807 -9.4774 -4.7061 REMARK 3 T TENSOR REMARK 3 T11: 0.4206 T22: 0.2705 REMARK 3 T33: 0.2344 T12: -0.0031 REMARK 3 T13: 0.0032 T23: 0.0037 REMARK 3 L TENSOR REMARK 3 L11: 0.8478 L22: 1.2848 REMARK 3 L33: 1.1550 L12: -0.0191 REMARK 3 L13: -0.1063 L23: -0.2184 REMARK 3 S TENSOR REMARK 3 S11: 0.0390 S12: -0.0021 S13: 0.0505 REMARK 3 S21: 0.0095 S22: -0.0124 S23: 0.2162 REMARK 3 S31: 0.1090 S32: -0.1848 S33: -0.0273 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: ( CHAIN A AND RESID 241:341 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.6015 -15.3496 -32.2495 REMARK 3 T TENSOR REMARK 3 T11: 0.3624 T22: 0.3656 REMARK 3 T33: 0.2280 T12: 0.0792 REMARK 3 T13: 0.0353 T23: 0.0301 REMARK 3 L TENSOR REMARK 3 L11: 1.2470 L22: 1.7595 REMARK 3 L33: 1.7298 L12: -0.1216 REMARK 3 L13: 0.0116 L23: 0.1057 REMARK 3 S TENSOR REMARK 3 S11: -0.0620 S12: 0.0056 S13: -0.0704 REMARK 3 S21: 0.1677 S22: -0.0610 S23: -0.0544 REMARK 3 S31: 0.2669 S32: 0.2501 S33: 0.1246 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: ( CHAIN H AND RESID 858:873 ) OR ( CHAIN G AND RESID REMARK 3 837:854 ) OR ( CHAIN F AND RESID 901:902 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.7648 -24.3847 -52.0058 REMARK 3 T TENSOR REMARK 3 T11: 0.1962 T22: 0.3093 REMARK 3 T33: 0.3200 T12: -0.0093 REMARK 3 T13: 0.0973 T23: -0.0305 REMARK 3 L TENSOR REMARK 3 L11: 1.2635 L22: 1.8856 REMARK 3 L33: 1.3389 L12: 0.3918 REMARK 3 L13: 0.5976 L23: -1.1463 REMARK 3 S TENSOR REMARK 3 S11: -0.0083 S12: -0.2590 S13: -0.2182 REMARK 3 S21: 0.0736 S22: -0.1629 S23: 0.0170 REMARK 3 S31: 0.1052 S32: -0.1382 S33: 0.1371 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: ( CHAIN A AND RESID 901:902 ) OR ( CHAIN C AND RESID REMARK 3 857:873 ) OR ( CHAIN B AND RESID 837:854 ) REMARK 3 ORIGIN FOR THE GROUP (A): -41.8086 -19.3755 -22.9771 REMARK 3 T TENSOR REMARK 3 T11: 0.4462 T22: 0.3320 REMARK 3 T33: 0.2352 T12: -0.0582 REMARK 3 T13: -0.0112 T23: -0.0206 REMARK 3 L TENSOR REMARK 3 L11: 0.8926 L22: 1.3020 REMARK 3 L33: 0.4040 L12: 0.8611 REMARK 3 L13: 0.5813 L23: 0.6885 REMARK 3 S TENSOR REMARK 3 S11: 0.1995 S12: -0.1524 S13: -0.0714 REMARK 3 S21: 0.0659 S22: -0.2493 S23: 0.0092 REMARK 3 S31: 0.0690 S32: -0.2651 S33: 0.0218 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5YUV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 30-NOV-17. REMARK 100 THE DEPOSITION ID IS D_1300005339. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-SEP-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95372 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 130 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 66012 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.060 REMARK 200 RESOLUTION RANGE LOW (A) : 70.830 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.06 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4IR1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.66 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% MPD , PH 5.2, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 298K, TEMPERATURE 298.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 28.47000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5420 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20760 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -60.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: F, G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5580 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21220 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -61.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN F 342 REMARK 465 MET F 343 REMARK 465 GLU F 344 REMARK 465 ARG F 345 REMARK 465 GLN F 346 REMARK 465 LEU F 347 REMARK 465 VAL F 348 REMARK 465 LEU F 349 REMARK 465 GLY F 350 REMARK 465 LEU F 351 REMARK 465 GLN A 342 REMARK 465 MET A 343 REMARK 465 GLU A 344 REMARK 465 ARG A 345 REMARK 465 GLN A 346 REMARK 465 LEU A 347 REMARK 465 VAL A 348 REMARK 465 LEU A 349 REMARK 465 GLY A 350 REMARK 465 LEU A 351 REMARK 465 DT H 856 REMARK 465 DC H 857 REMARK 465 DT H 874 REMARK 465 DT C 856 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS F 64 CG CD CE NZ REMARK 470 LYS F 205 CG CD CE NZ REMARK 470 LYS A 64 CG CD CE NZ REMARK 470 LYS A 205 CG CD CE NZ REMARK 470 DC C 857 P OP1 OP2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OP2 DG C 861 O HOH C 1001 2.05 REMARK 500 O HOH F 1004 O HOH F 1162 2.09 REMARK 500 OD1 ASP A 207 O HOH A 1001 2.12 REMARK 500 O ARG F 327 O HOH F 1001 2.13 REMARK 500 O HOH A 1034 O HOH A 1151 2.16 REMARK 500 O HOH A 1156 O HOH A 1170 2.17 REMARK 500 NH1 ARG F 285 OP2 DT H 866 2.17 REMARK 500 O HOH F 1178 O HOH G 923 2.18 REMARK 500 NH2 ARG F 306 O HOH F 1002 2.19 REMARK 500 O HOH F 1081 O HOH F 1175 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DG G 841 O3' DG G 841 C3' -0.041 REMARK 500 DC G 845 O3' DC G 845 C3' -0.039 REMARK 500 DG H 869 O3' DG H 869 C3' -0.038 REMARK 500 DC H 873 P DC H 873 O5' 0.083 REMARK 500 DC H 873 C4' DC H 873 C3' 0.110 REMARK 500 DC H 873 C3' DC H 873 C2' -0.226 REMARK 500 DC H 873 O4' DC H 873 C1' 0.123 REMARK 500 DC H 873 O4' DC H 873 C4' -0.154 REMARK 500 DC H 873 O3' DC H 873 C3' 0.088 REMARK 500 DC H 873 C1' DC H 873 N1 -0.093 REMARK 500 DC H 873 C4 DC H 873 N4 0.126 REMARK 500 DC H 873 N1 DC H 873 C2 -0.069 REMARK 500 DC H 873 C5 DC H 873 C6 0.056 REMARK 500 DA C 859 O3' DA C 859 C3' -0.053 REMARK 500 DA C 867 O3' DA C 867 C3' -0.041 REMARK 500 DC C 871 O3' DC C 871 C3' -0.038 REMARK 500 DC C 873 P DC C 873 O5' 0.068 REMARK 500 DC C 873 C4' DC C 873 C3' 0.094 REMARK 500 DC C 873 C3' DC C 873 C2' -0.230 REMARK 500 DC C 873 O4' DC C 873 C1' 0.127 REMARK 500 DC C 873 O4' DC C 873 C4' -0.170 REMARK 500 DC C 873 C1' DC C 873 N1 -0.103 REMARK 500 DC C 873 C4 DC C 873 N4 0.121 REMARK 500 DC C 873 N1 DC C 873 C2 -0.071 REMARK 500 DC C 873 N1 DC C 873 C6 -0.039 REMARK 500 DC C 873 C5 DC C 873 C6 0.058 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG G 842 O4' - C1' - N9 ANGL. DEV. = 2.0 DEGREES REMARK 500 DA G 848 O4' - C1' - N9 ANGL. DEV. = 2.1 DEGREES REMARK 500 DG H 860 O4' - C1' - N9 ANGL. DEV. = 2.4 DEGREES REMARK 500 DG H 869 O4' - C1' - N9 ANGL. DEV. = 3.1 DEGREES REMARK 500 DC H 872 O4' - C1' - N1 ANGL. DEV. = 2.2 DEGREES REMARK 500 DC H 872 C3' - O3' - P ANGL. DEV. = -7.8 DEGREES REMARK 500 DC H 873 O3' - P - OP1 ANGL. DEV. = 6.7 DEGREES REMARK 500 DC H 873 OP1 - P - OP2 ANGL. DEV. = -11.4 DEGREES REMARK 500 DC H 873 O4' - C1' - N1 ANGL. DEV. = 4.7 DEGREES REMARK 500 DC H 873 C2 - N3 - C4 ANGL. DEV. = 3.4 DEGREES REMARK 500 DC H 873 N3 - C4 - C5 ANGL. DEV. = -4.2 DEGREES REMARK 500 DG B 850 O4' - C1' - N9 ANGL. DEV. = 2.8 DEGREES REMARK 500 DA C 859 O5' - P - OP2 ANGL. DEV. = -9.8 DEGREES REMARK 500 DC C 872 C3' - O3' - P ANGL. DEV. = -10.1 DEGREES REMARK 500 DC C 873 O3' - P - O5' ANGL. DEV. = 13.3 DEGREES REMARK 500 DC C 873 OP1 - P - OP2 ANGL. DEV. = -11.8 DEGREES REMARK 500 DC C 873 O4' - C1' - N1 ANGL. DEV. = 2.7 DEGREES REMARK 500 DC C 873 N3 - C4 - C5 ANGL. DEV. = -3.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN F 21 88.81 -156.06 REMARK 500 ALA F 56 -1.46 75.94 REMARK 500 SER F 101 -175.54 -174.84 REMARK 500 PHE F 295 -0.66 71.71 REMARK 500 GLU F 322 -101.21 -78.83 REMARK 500 ARG F 323 89.57 -68.80 REMARK 500 ARG F 324 -69.81 -159.24 REMARK 500 ALA A 56 -2.03 80.39 REMARK 500 SER A 101 -172.96 -172.79 REMARK 500 ASP A 230 91.88 -163.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 49 0.19 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG F 901 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP F 8 OD1 REMARK 620 2 MET F 9 O 84.1 REMARK 620 3 ASP F 103 OD2 90.5 85.9 REMARK 620 4 TTP H 901 O1A 97.4 177.9 95.6 REMARK 620 5 TTP H 901 O1A 105.7 168.2 87.5 11.5 REMARK 620 6 TTP H 901 O1B 170.5 86.5 89.9 91.9 83.8 REMARK 620 7 TTP H 901 O1B 170.5 88.6 95.1 89.7 82.3 5.5 REMARK 620 8 TTP H 901 O3G 94.6 90.1 173.1 88.3 95.6 84.3 79.2 REMARK 620 9 TTP H 901 O3G 99.6 94.6 169.9 83.7 90.3 80.1 74.8 6.4 REMARK 620 N 1 2 3 4 5 6 7 8 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG F 902 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP F 103 OD1 REMARK 620 2 GLU F 104 OE2 117.8 REMARK 620 3 HOH F1086 O 175.7 66.4 REMARK 620 4 DC H 873 O3' 97.0 111.1 82.0 REMARK 620 5 DC H 873 O3' 84.1 90.2 97.2 33.7 REMARK 620 6 TTP H 901 O1A 105.5 136.7 70.3 62.5 95.9 REMARK 620 7 TTP H 901 O1A 93.5 148.4 82.3 65.8 97.6 12.3 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 901 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 8 OD1 REMARK 620 2 MET A 9 O 84.5 REMARK 620 3 ASP A 103 OD2 91.8 85.2 REMARK 620 4 TTP C 901 O2A 92.0 175.9 97.0 REMARK 620 5 TTP C 901 O2A 101.6 172.5 90.1 11.6 REMARK 620 6 TTP C 901 O2B 179.2 95.4 89.0 88.2 78.6 REMARK 620 7 TTP C 901 O2B 168.7 87.6 95.6 95.6 86.9 10.6 REMARK 620 8 TTP C 901 O2G 88.3 94.2 179.4 83.6 90.4 90.9 84.2 REMARK 620 9 TTP C 901 O2G 92.6 95.4 175.7 82.6 88.8 86.6 80.1 4.3 REMARK 620 N 1 2 3 4 5 6 7 8 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 902 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 8 OD1 REMARK 620 2 ASP A 8 OD2 48.5 REMARK 620 3 ASP A 103 OD1 107.2 148.8 REMARK 620 4 GLU A 104 OE2 133.5 86.0 110.4 REMARK 620 5 TTP C 901 O2A 78.7 89.6 105.9 114.8 REMARK 620 6 TTP C 901 O2A 77.4 97.6 94.3 124.7 12.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG F 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG F 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-nucleotide TTP C 901 and DC REMARK 800 C 873 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-nucleotide TTP H 901 and DC REMARK 800 H 873 REMARK 999 REMARK 999 SEQUENCE REMARK 999 AUTHORS STATE THAT, FOR THE CHAIN H OR C, THE 873DC AND 901TTP REMARK 999 REPRESENT AN INTERMEDIATE FORM DURING DNA SYNTHESIS AND THE BOND REMARK 999 BETWEEN THEM HAS BEEN STRETCHED AND WILL NOT BE SEEN IN A SIMPLE REMARK 999 LINKAGE BETWEEN DC AND TTP. DBREF 5YUV F 2 351 UNP Q47155 DPO4_ECOLI 2 351 DBREF 5YUV A 2 351 UNP Q47155 DPO4_ECOLI 2 351 DBREF 5YUV G 837 854 PDB 5YUV 5YUV 837 854 DBREF 5YUV H 856 874 PDB 5YUV 5YUV 856 874 DBREF 5YUV B 837 854 PDB 5YUV 5YUV 837 854 DBREF 5YUV C 856 873 PDB 5YUV 5YUV 856 873 SEQADV 5YUV GLY F 0 UNP Q47155 EXPRESSION TAG SEQADV 5YUV SER F 1 UNP Q47155 EXPRESSION TAG SEQADV 5YUV GLY A 0 UNP Q47155 EXPRESSION TAG SEQADV 5YUV SER A 1 UNP Q47155 EXPRESSION TAG SEQRES 1 F 352 GLY SER ARG LYS ILE ILE HIS VAL ASP MET ASP CYS PHE SEQRES 2 F 352 PHE ALA ALA VAL GLU MET ARG ASP ASN PRO ALA LEU ARG SEQRES 3 F 352 ASP ILE PRO ILE ALA ILE GLY GLY SER ARG GLU ARG ARG SEQRES 4 F 352 GLY VAL ILE SER THR ALA ASN TYR PRO ALA ARG LYS PHE SEQRES 5 F 352 GLY VAL ARG SER ALA MET PRO THR GLY MET ALA LEU LYS SEQRES 6 F 352 LEU CYS PRO HIS LEU THR LEU LEU PRO GLY ARG PHE ASP SEQRES 7 F 352 ALA TYR LYS GLU ALA SER ASN HIS ILE ARG GLU ILE PHE SEQRES 8 F 352 SER ARG TYR THR SER ARG ILE GLU PRO LEU SER LEU ASP SEQRES 9 F 352 GLU ALA TYR LEU ASP VAL THR ASP SER VAL HIS CYS HIS SEQRES 10 F 352 GLY SER ALA THR LEU ILE ALA GLN GLU ILE ARG GLN THR SEQRES 11 F 352 ILE PHE ASN GLU LEU GLN LEU THR ALA SER ALA GLY VAL SEQRES 12 F 352 ALA PRO VAL LYS PHE LEU ALA LYS ILE ALA SER ASP MET SEQRES 13 F 352 ASN LYS PRO ASN GLY GLN PHE VAL ILE THR PRO ALA GLU SEQRES 14 F 352 VAL PRO ALA PHE LEU GLN THR LEU PRO LEU ALA LYS ILE SEQRES 15 F 352 PRO GLY VAL GLY LYS VAL SER ALA ALA LYS LEU GLU ALA SEQRES 16 F 352 MET GLY LEU ARG THR CYS GLY ASP VAL GLN LYS CYS ASP SEQRES 17 F 352 LEU VAL MET LEU LEU LYS ARG PHE GLY LYS PHE GLY ARG SEQRES 18 F 352 ILE LEU TRP GLU ARG SER GLN GLY ILE ASP GLU ARG ASP SEQRES 19 F 352 VAL ASN SER GLU ARG LEU ARG LYS SER VAL GLY VAL GLU SEQRES 20 F 352 ARG THR MET ALA GLU ASP ILE HIS HIS TRP SER GLU CYS SEQRES 21 F 352 GLU ALA ILE ILE GLU ARG LEU TYR PRO GLU LEU GLU ARG SEQRES 22 F 352 ARG LEU ALA LYS VAL LYS PRO ASP LEU LEU ILE ALA ARG SEQRES 23 F 352 GLN GLY VAL LYS LEU LYS PHE ASP ASP PHE GLN GLN THR SEQRES 24 F 352 THR GLN GLU HIS VAL TRP PRO ARG LEU ASN LYS ALA ASP SEQRES 25 F 352 LEU ILE ALA THR ALA ARG LYS THR TRP ASP GLU ARG ARG SEQRES 26 F 352 GLY GLY ARG GLY VAL ARG LEU VAL GLY LEU HIS VAL THR SEQRES 27 F 352 LEU LEU ASP PRO GLN MET GLU ARG GLN LEU VAL LEU GLY SEQRES 28 F 352 LEU SEQRES 1 A 352 GLY SER ARG LYS ILE ILE HIS VAL ASP MET ASP CYS PHE SEQRES 2 A 352 PHE ALA ALA VAL GLU MET ARG ASP ASN PRO ALA LEU ARG SEQRES 3 A 352 ASP ILE PRO ILE ALA ILE GLY GLY SER ARG GLU ARG ARG SEQRES 4 A 352 GLY VAL ILE SER THR ALA ASN TYR PRO ALA ARG LYS PHE SEQRES 5 A 352 GLY VAL ARG SER ALA MET PRO THR GLY MET ALA LEU LYS SEQRES 6 A 352 LEU CYS PRO HIS LEU THR LEU LEU PRO GLY ARG PHE ASP SEQRES 7 A 352 ALA TYR LYS GLU ALA SER ASN HIS ILE ARG GLU ILE PHE SEQRES 8 A 352 SER ARG TYR THR SER ARG ILE GLU PRO LEU SER LEU ASP SEQRES 9 A 352 GLU ALA TYR LEU ASP VAL THR ASP SER VAL HIS CYS HIS SEQRES 10 A 352 GLY SER ALA THR LEU ILE ALA GLN GLU ILE ARG GLN THR SEQRES 11 A 352 ILE PHE ASN GLU LEU GLN LEU THR ALA SER ALA GLY VAL SEQRES 12 A 352 ALA PRO VAL LYS PHE LEU ALA LYS ILE ALA SER ASP MET SEQRES 13 A 352 ASN LYS PRO ASN GLY GLN PHE VAL ILE THR PRO ALA GLU SEQRES 14 A 352 VAL PRO ALA PHE LEU GLN THR LEU PRO LEU ALA LYS ILE SEQRES 15 A 352 PRO GLY VAL GLY LYS VAL SER ALA ALA LYS LEU GLU ALA SEQRES 16 A 352 MET GLY LEU ARG THR CYS GLY ASP VAL GLN LYS CYS ASP SEQRES 17 A 352 LEU VAL MET LEU LEU LYS ARG PHE GLY LYS PHE GLY ARG SEQRES 18 A 352 ILE LEU TRP GLU ARG SER GLN GLY ILE ASP GLU ARG ASP SEQRES 19 A 352 VAL ASN SER GLU ARG LEU ARG LYS SER VAL GLY VAL GLU SEQRES 20 A 352 ARG THR MET ALA GLU ASP ILE HIS HIS TRP SER GLU CYS SEQRES 21 A 352 GLU ALA ILE ILE GLU ARG LEU TYR PRO GLU LEU GLU ARG SEQRES 22 A 352 ARG LEU ALA LYS VAL LYS PRO ASP LEU LEU ILE ALA ARG SEQRES 23 A 352 GLN GLY VAL LYS LEU LYS PHE ASP ASP PHE GLN GLN THR SEQRES 24 A 352 THR GLN GLU HIS VAL TRP PRO ARG LEU ASN LYS ALA ASP SEQRES 25 A 352 LEU ILE ALA THR ALA ARG LYS THR TRP ASP GLU ARG ARG SEQRES 26 A 352 GLY GLY ARG GLY VAL ARG LEU VAL GLY LEU HIS VAL THR SEQRES 27 A 352 LEU LEU ASP PRO GLN MET GLU ARG GLN LEU VAL LEU GLY SEQRES 28 A 352 LEU SEQRES 1 G 18 DT DC DT DA DG DG DG DT DC DC DT DA DG SEQRES 2 G 18 DG DA DC DC DC SEQRES 1 H 19 DT DC DT DA DG DG DG DT DC DC DT DA DG SEQRES 2 H 19 DG DA DC DC DC DT SEQRES 1 B 18 DT DC DT DA DG DG DG DT DC DC DT DA DG SEQRES 2 B 18 DG DA DC DC DC SEQRES 1 C 18 DT DC DT DA DG DG DG DT DC DC DT DA DG SEQRES 2 C 18 DG DA DC DC DC HET MG F 901 1 HET MG F 902 1 HET MG A 901 1 HET MG A 902 1 HET TTP H 901 58 HET TTP C 901 58 HETNAM MG MAGNESIUM ION HETNAM TTP THYMIDINE-5'-TRIPHOSPHATE FORMUL 7 MG 4(MG 2+) FORMUL 11 TTP 2(C10 H17 N2 O14 P3) FORMUL 13 HOH *483(H2 O) HELIX 1 AA1 CYS F 11 ASP F 20 1 10 HELIX 2 AA2 ASN F 21 ARG F 25 5 5 HELIX 3 AA3 ASN F 45 LYS F 50 1 6 HELIX 4 AA4 PRO F 58 CYS F 66 1 9 HELIX 5 AA5 ARG F 75 ARG F 92 1 18 HELIX 6 AA6 VAL F 113 GLY F 117 5 5 HELIX 7 AA7 SER F 118 GLN F 135 1 18 HELIX 8 AA8 VAL F 145 ASP F 154 1 10 HELIX 9 AA9 THR F 165 ALA F 167 5 3 HELIX 10 AB1 GLU F 168 THR F 175 1 8 HELIX 11 AB2 PRO F 177 ILE F 181 5 5 HELIX 12 AB3 GLY F 185 MET F 195 1 11 HELIX 13 AB4 THR F 199 LYS F 205 1 7 HELIX 14 AB5 ASP F 207 GLY F 216 1 10 HELIX 15 AB6 GLY F 216 GLN F 227 1 12 HELIX 16 AB7 HIS F 255 LYS F 278 1 24 HELIX 17 AB8 ASN F 308 GLU F 322 1 15 HELIX 18 AB9 CYS A 11 ASN A 21 1 11 HELIX 19 AC1 PRO A 22 ARG A 25 5 4 HELIX 20 AC2 ASN A 45 PHE A 51 1 7 HELIX 21 AC3 PRO A 58 CYS A 66 1 9 HELIX 22 AC4 ARG A 75 THR A 94 1 20 HELIX 23 AC5 VAL A 113 GLY A 117 5 5 HELIX 24 AC6 SER A 118 GLN A 135 1 18 HELIX 25 AC7 VAL A 145 ASP A 154 1 10 HELIX 26 AC8 THR A 165 ALA A 167 5 3 HELIX 27 AC9 GLU A 168 THR A 175 1 8 HELIX 28 AD1 PRO A 177 ILE A 181 5 5 HELIX 29 AD2 GLY A 185 MET A 195 1 11 HELIX 30 AD3 THR A 199 LYS A 205 1 7 HELIX 31 AD4 ASP A 207 GLY A 216 1 10 HELIX 32 AD5 GLY A 216 SER A 226 1 11 HELIX 33 AD6 HIS A 255 LYS A 278 1 24 HELIX 34 AD7 ASN A 308 ARG A 324 1 17 SHEET 1 AA1 5 ILE F 97 SER F 101 0 SHEET 2 AA1 5 GLU F 104 ASP F 108 -1 O TYR F 106 N GLU F 98 SHEET 3 AA1 5 ILE F 4 MET F 9 -1 N ILE F 5 O LEU F 107 SHEET 4 AA1 5 ALA F 138 ALA F 143 -1 O ALA F 143 N ILE F 4 SHEET 5 AA1 5 GLN F 161 VAL F 163 1 O PHE F 162 N VAL F 142 SHEET 1 AA2 3 ILE F 41 ALA F 44 0 SHEET 2 AA2 3 ILE F 29 GLY F 32 -1 N ILE F 31 O SER F 42 SHEET 3 AA2 3 THR F 70 LEU F 72 1 O LEU F 72 N ALA F 30 SHEET 1 AA3 4 SER F 242 ILE F 253 0 SHEET 2 AA3 4 VAL F 329 THR F 337 -1 O LEU F 334 N VAL F 245 SHEET 3 AA3 4 ARG F 285 PHE F 292 -1 N GLY F 287 O HIS F 335 SHEET 4 AA3 4 GLN F 297 VAL F 303 -1 O GLN F 300 N VAL F 288 SHEET 1 AA4 5 ILE A 97 SER A 101 0 SHEET 2 AA4 5 GLU A 104 ASP A 108 -1 O TYR A 106 N GLU A 98 SHEET 3 AA4 5 ILE A 4 MET A 9 -1 N ILE A 5 O LEU A 107 SHEET 4 AA4 5 ALA A 138 ALA A 143 -1 O SER A 139 N ASP A 8 SHEET 5 AA4 5 GLN A 161 VAL A 163 1 O PHE A 162 N VAL A 142 SHEET 1 AA5 3 ILE A 41 ALA A 44 0 SHEET 2 AA5 3 ILE A 29 GLY A 32 -1 N ILE A 31 O SER A 42 SHEET 3 AA5 3 THR A 70 LEU A 72 1 O LEU A 72 N ALA A 30 SHEET 1 AA6 4 SER A 242 ILE A 253 0 SHEET 2 AA6 4 VAL A 329 THR A 337 -1 O LEU A 334 N VAL A 245 SHEET 3 AA6 4 ARG A 285 PHE A 292 -1 N GLY A 287 O HIS A 335 SHEET 4 AA6 4 GLN A 297 VAL A 303 -1 O THR A 298 N LEU A 290 LINK O3'A DC H 873 PA ATTP H 901 1555 1555 1.72 LINK O3'A DC C 873 PA ATTP C 901 1555 1555 1.68 LINK OD1 ASP F 8 MG MG F 901 1555 1555 2.08 LINK O MET F 9 MG MG F 901 1555 1555 2.22 LINK OD2 ASP F 103 MG MG F 901 1555 1555 2.38 LINK OD1 ASP F 103 MG MG F 902 1555 1555 2.38 LINK OE2 GLU F 104 MG MG F 902 1555 1555 1.93 LINK MG MG F 901 O1AATTP H 901 1555 1555 2.17 LINK MG MG F 901 O1ABTTP H 901 1555 1555 1.81 LINK MG MG F 901 O1BATTP H 901 1555 1555 2.07 LINK MG MG F 901 O1BBTTP H 901 1555 1555 2.34 LINK MG MG F 901 O3GATTP H 901 1555 1555 2.29 LINK MG MG F 901 O3GBTTP H 901 1555 1555 2.41 LINK MG MG F 902 O HOH F1086 1555 1555 2.95 LINK MG MG F 902 O3'A DC H 873 1555 1555 2.34 LINK MG MG F 902 O3'B DC H 873 1555 1555 2.44 LINK MG MG F 902 O1AATTP H 901 1555 1555 2.35 LINK MG MG F 902 O1ABTTP H 901 1555 1555 2.48 LINK OD1 ASP A 8 MG MG A 901 1555 1555 2.05 LINK OD1 ASP A 8 MG MG A 902 1555 1555 2.68 LINK OD2 ASP A 8 MG MG A 902 1555 1555 2.66 LINK O MET A 9 MG MG A 901 1555 1555 2.30 LINK OD2 ASP A 103 MG MG A 901 1555 1555 2.28 LINK OD1 ASP A 103 MG MG A 902 1555 1555 2.20 LINK OE2 GLU A 104 MG MG A 902 1555 1555 1.98 LINK MG MG A 901 O2AATTP C 901 1555 1555 2.36 LINK MG MG A 901 O2ABTTP C 901 1555 1555 2.08 LINK MG MG A 901 O2BATTP C 901 1555 1555 1.88 LINK MG MG A 901 O2BBTTP C 901 1555 1555 2.24 LINK MG MG A 901 O2GATTP C 901 1555 1555 2.27 LINK MG MG A 901 O2GBTTP C 901 1555 1555 2.39 LINK MG MG A 902 O2AATTP C 901 1555 1555 2.30 LINK MG MG A 902 O2ABTTP C 901 1555 1555 2.42 CISPEP 1 LYS F 157 PRO F 158 0 -5.65 CISPEP 2 LYS A 157 PRO A 158 0 -1.47 SITE 1 AC1 5 ASP F 8 MET F 9 ASP F 103 MG F 902 SITE 2 AC1 5 TTP H 901 SITE 1 AC2 7 ASP F 8 ASP F 103 GLU F 104 MG F 901 SITE 2 AC2 7 HOH F1086 DC H 873 TTP H 901 SITE 1 AC3 5 ASP A 8 MET A 9 ASP A 103 MG A 902 SITE 2 AC3 5 TTP C 901 SITE 1 AC4 6 ASP A 8 ASP A 103 GLU A 104 MG A 901 SITE 2 AC4 6 DC C 873 TTP C 901 SITE 1 AC5 29 ASP A 8 MET A 9 ASP A 10 CYS A 11 SITE 2 AC5 29 PHE A 12 PHE A 13 SER A 42 THR A 43 SITE 3 AC5 29 ARG A 49 SER A 55 SER A 101 ASP A 103 SITE 4 AC5 29 GLU A 104 LYS A 150 LYS A 157 MG A 901 SITE 5 AC5 29 MG A 902 HOH A1024 HOH A1071 HOH A1081 SITE 6 AC5 29 DA B 840 DG B 841 DG B 842 DC C 872 SITE 7 AC5 29 HOH C1011 HOH C1014 HOH C1021 HOH C1028 SITE 8 AC5 29 HOH C1032 SITE 1 AC6 31 ASP F 8 MET F 9 ASP F 10 CYS F 11 SITE 2 AC6 31 PHE F 12 PHE F 13 SER F 42 THR F 43 SITE 3 AC6 31 ARG F 49 SER F 101 ASP F 103 GLU F 104 SITE 4 AC6 31 LYS F 150 LYS F 157 MG F 901 MG F 902 SITE 5 AC6 31 HOH F1006 HOH F1019 HOH F1049 HOH F1086 SITE 6 AC6 31 HOH F1093 HOH F1105 DA G 840 DG G 841 SITE 7 AC6 31 DG G 842 DC H 872 HOH H1001 HOH H1006 SITE 8 AC6 31 HOH H1013 HOH H1014 HOH H1022 CRYST1 86.660 56.940 109.780 90.00 95.00 90.00 P 1 21 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011539 0.000000 0.001010 0.00000 SCALE2 0.000000 0.017562 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009144 0.00000