HEADER DNA BINDING PROTEIN/DNA 23-NOV-17 5YUY TITLE DNA POLYMERASE IV - DNA TERNARY COMPLEX 9 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA POLYMERASE IV; COMPND 3 CHAIN: F, A; COMPND 4 SYNONYM: POL IV,TRANSLESION SYNTHESIS POLYMERASE IV,TSL POLYMERASE COMPND 5 IV; COMPND 6 EC: 2.7.7.7; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: DTN1; COMPND 10 CHAIN: G, B; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: DTN; COMPND 14 CHAIN: H, C; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI K-12; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K-12; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 SYNTHETIC: YES; SOURCE 9 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI K-12; SOURCE 10 ORGANISM_TAXID: 83333; SOURCE 11 MOL_ID: 3; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI K-12; SOURCE 14 ORGANISM_TAXID: 83333 KEYWDS DNA POLYMERASE, DNA BINDING PROTEIN, DNA BINDING PROTEIN-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.KOTTUR,D.T.NAIR REVDAT 2 22-NOV-23 5YUY 1 LINK REVDAT 1 17-OCT-18 5YUY 0 JRNL AUTH J.KOTTUR,D.T.NAIR JRNL TITL PYROPHOSPHATE HYDROLYSIS IS AN INTRINSIC AND CRITICAL STEP JRNL TITL 2 OF THE DNA SYNTHESIS REACTION JRNL REF NUCLEIC ACIDS RES. V. 46 5875 2018 JRNL REFN ESSN 1362-4962 JRNL PMID 29850882 JRNL DOI 10.1093/NAR/GKY402 REMARK 2 REMARK 2 RESOLUTION. 1.74 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.74 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.54 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.010 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 110068 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 10768 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.5570 - 5.4035 0.95 6457 366 0.1776 0.1616 REMARK 3 2 5.4035 - 4.2900 1.00 6776 386 0.1557 0.1767 REMARK 3 3 4.2900 - 3.7481 1.00 6822 354 0.1482 0.1888 REMARK 3 4 3.7481 - 3.4055 1.00 6832 365 0.1575 0.1670 REMARK 3 5 3.4055 - 3.1615 1.00 6829 304 0.1584 0.1798 REMARK 3 6 3.1615 - 2.9751 1.00 6810 355 0.1711 0.2240 REMARK 3 7 2.9751 - 2.8262 1.00 6910 329 0.1851 0.1970 REMARK 3 8 2.8262 - 2.7032 1.00 6718 402 0.1908 0.2262 REMARK 3 9 2.7032 - 2.5991 1.00 6758 378 0.2028 0.2335 REMARK 3 10 2.5991 - 2.5094 1.00 6846 414 0.2000 0.2506 REMARK 3 11 2.5094 - 2.4310 1.00 6814 337 0.1981 0.2189 REMARK 3 12 2.4310 - 2.3615 1.00 6853 345 0.1949 0.2271 REMARK 3 13 2.3615 - 2.2993 1.00 6739 355 0.1940 0.2419 REMARK 3 14 2.2993 - 2.2432 1.00 6812 422 0.1998 0.2601 REMARK 3 15 2.2432 - 2.1922 1.00 6810 341 0.1983 0.2331 REMARK 3 16 2.1922 - 2.1456 1.00 6834 328 0.1945 0.2405 REMARK 3 17 2.1456 - 2.1027 1.00 6817 324 0.2161 0.2548 REMARK 3 18 2.1027 - 2.0630 1.00 6886 332 0.2167 0.2623 REMARK 3 19 2.0630 - 2.0261 1.00 6819 342 0.2258 0.2325 REMARK 3 20 2.0261 - 1.9918 1.00 6839 354 0.2308 0.2796 REMARK 3 21 1.9918 - 1.9597 1.00 6729 386 0.2372 0.2705 REMARK 3 22 1.9597 - 1.9295 1.00 6876 376 0.2381 0.2596 REMARK 3 23 1.9295 - 1.9011 1.00 6794 358 0.2549 0.3036 REMARK 3 24 1.9011 - 1.8744 1.00 6816 355 0.2663 0.3106 REMARK 3 25 1.8744 - 1.8490 1.00 6764 337 0.2725 0.3318 REMARK 3 26 1.8490 - 1.8250 1.00 6901 339 0.2781 0.3334 REMARK 3 27 1.8250 - 1.8022 1.00 6801 345 0.2801 0.3087 REMARK 3 28 1.8022 - 1.7805 1.00 6693 396 0.3038 0.3406 REMARK 3 29 1.7805 - 1.7598 1.00 6863 393 0.3016 0.3513 REMARK 3 30 1.7598 - 1.7400 0.99 6729 350 0.3555 0.3759 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.480 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 7223 REMARK 3 ANGLE : 1.040 10080 REMARK 3 CHIRALITY : 0.054 1115 REMARK 3 PLANARITY : 0.006 1038 REMARK 3 DIHEDRAL : 22.125 4201 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'F' AND (RESID 0 THROUGH 10 OR RESID 76 REMARK 3 THROUGH 164 ) REMARK 3 ORIGIN FOR THE GROUP (A): 71.7296 12.6261 179.7331 REMARK 3 T TENSOR REMARK 3 T11: 0.1436 T22: 0.1784 REMARK 3 T33: 0.3767 T12: 0.0131 REMARK 3 T13: 0.0571 T23: 0.0146 REMARK 3 L TENSOR REMARK 3 L11: 1.4348 L22: 1.6612 REMARK 3 L33: 2.0863 L12: -0.0772 REMARK 3 L13: 0.5160 L23: 0.1116 REMARK 3 S TENSOR REMARK 3 S11: -0.0605 S12: -0.1692 S13: -0.0613 REMARK 3 S21: 0.1995 S22: 0.0085 S23: 0.5438 REMARK 3 S31: 0.0416 S32: -0.1618 S33: 0.0477 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'F' AND (RESID 11 THROUGH 75 ) REMARK 3 ORIGIN FOR THE GROUP (A): 89.0339 29.8109 179.0614 REMARK 3 T TENSOR REMARK 3 T11: 0.2411 T22: 0.2149 REMARK 3 T33: 0.4718 T12: -0.0302 REMARK 3 T13: -0.1242 T23: 0.0110 REMARK 3 L TENSOR REMARK 3 L11: 0.7644 L22: 1.4853 REMARK 3 L33: 0.5748 L12: 0.1182 REMARK 3 L13: 0.5015 L23: -0.1410 REMARK 3 S TENSOR REMARK 3 S11: -0.0742 S12: -0.1303 S13: 0.5843 REMARK 3 S21: 0.2636 S22: -0.2130 S23: -0.0234 REMARK 3 S31: -0.2907 S32: 0.1698 S33: 0.1899 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'F' AND (RESID 165 THROUGH 229 ) REMARK 3 ORIGIN FOR THE GROUP (A): 75.0196 11.9953 154.0894 REMARK 3 T TENSOR REMARK 3 T11: 0.2484 T22: 0.1979 REMARK 3 T33: 0.4170 T12: -0.0439 REMARK 3 T13: -0.1104 T23: 0.0493 REMARK 3 L TENSOR REMARK 3 L11: 1.5771 L22: 1.3187 REMARK 3 L33: 0.8696 L12: 0.5427 REMARK 3 L13: 0.3054 L23: 0.0533 REMARK 3 S TENSOR REMARK 3 S11: -0.2354 S12: 0.1650 S13: 0.1087 REMARK 3 S21: -0.5061 S22: 0.0567 S23: 0.2357 REMARK 3 S31: -0.1027 S32: 0.0612 S33: 0.1382 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'F' AND (RESID 241 THROUGH 341 ) REMARK 3 ORIGIN FOR THE GROUP (A): 107.0991 7.8169 173.8678 REMARK 3 T TENSOR REMARK 3 T11: 0.0053 T22: 0.4617 REMARK 3 T33: 0.2583 T12: 0.0734 REMARK 3 T13: 0.0808 T23: 0.2075 REMARK 3 L TENSOR REMARK 3 L11: 1.6448 L22: 1.0916 REMARK 3 L33: 1.2772 L12: -0.5900 REMARK 3 L13: 0.0999 L23: 0.6719 REMARK 3 S TENSOR REMARK 3 S11: -0.1434 S12: 0.3341 S13: 0.1522 REMARK 3 S21: 0.2483 S22: 0.0500 S23: -0.2486 REMARK 3 S31: 0.3590 S32: 0.6303 S33: 0.0892 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 0 THROUGH 10 OR RESID 76 REMARK 3 THROUGH 164 ) REMARK 3 ORIGIN FOR THE GROUP (A): 104.9643 18.2908 106.3067 REMARK 3 T TENSOR REMARK 3 T11: 0.3980 T22: 0.2727 REMARK 3 T33: 0.1995 T12: -0.0469 REMARK 3 T13: -0.0565 T23: -0.0002 REMARK 3 L TENSOR REMARK 3 L11: 1.5000 L22: 1.3862 REMARK 3 L33: 1.3047 L12: -0.2159 REMARK 3 L13: 0.3026 L23: -0.0490 REMARK 3 S TENSOR REMARK 3 S11: -0.0053 S12: 0.1172 S13: -0.0167 REMARK 3 S21: -0.2882 S22: 0.0192 S23: 0.2158 REMARK 3 S31: 0.1340 S32: -0.1553 S33: -0.0095 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 11 THROUGH 75 ) REMARK 3 ORIGIN FOR THE GROUP (A): 102.4661 35.2576 124.0500 REMARK 3 T TENSOR REMARK 3 T11: 0.4464 T22: 0.2543 REMARK 3 T33: 0.2287 T12: 0.0640 REMARK 3 T13: 0.0138 T23: 0.0021 REMARK 3 L TENSOR REMARK 3 L11: 0.8920 L22: 1.3716 REMARK 3 L33: 1.3280 L12: -0.2966 REMARK 3 L13: -0.3313 L23: -0.0240 REMARK 3 S TENSOR REMARK 3 S11: 0.0933 S12: -0.0897 S13: 0.2042 REMARK 3 S21: 0.0018 S22: -0.0599 S23: 0.1432 REMARK 3 S31: -0.5104 S32: -0.3836 S33: -0.0411 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 165 THROUGH 229 ) REMARK 3 ORIGIN FOR THE GROUP (A): 129.6481 17.7078 114.4019 REMARK 3 T TENSOR REMARK 3 T11: 0.4023 T22: 0.2800 REMARK 3 T33: 0.2038 T12: 0.0043 REMARK 3 T13: 0.0063 T23: 0.0057 REMARK 3 L TENSOR REMARK 3 L11: 1.1384 L22: 1.6232 REMARK 3 L33: 1.1138 L12: 0.0718 REMARK 3 L13: -0.0349 L23: 0.4656 REMARK 3 S TENSOR REMARK 3 S11: 0.0208 S12: 0.0091 S13: 0.0680 REMARK 3 S21: 0.1046 S22: 0.0003 S23: -0.3421 REMARK 3 S31: 0.1214 S32: 0.1755 S33: -0.0410 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 241 THROUGH 341 ) REMARK 3 ORIGIN FOR THE GROUP (A): 104.3588 11.7257 142.0680 REMARK 3 T TENSOR REMARK 3 T11: 0.3184 T22: 0.3415 REMARK 3 T33: 0.1883 T12: -0.1006 REMARK 3 T13: 0.0339 T23: -0.0155 REMARK 3 L TENSOR REMARK 3 L11: 1.2838 L22: 1.7446 REMARK 3 L33: 2.4060 L12: -0.0241 REMARK 3 L13: 0.0520 L23: -0.2758 REMARK 3 S TENSOR REMARK 3 S11: -0.0617 S12: -0.0395 S13: -0.1086 REMARK 3 S21: -0.1887 S22: -0.0297 S23: 0.1255 REMARK 3 S31: 0.2876 S32: -0.3807 S33: 0.1000 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 858 THROUGH 874 ) OR CHAIN 'G' REMARK 3 AND (RESID 837 THROUGH 854) OR CHAIN 'F' AND (RESID REMARK 3 901 THROUGH 903) REMARK 3 ORIGIN FOR THE GROUP (A): 94.4900 2.6988 161.9173 REMARK 3 T TENSOR REMARK 3 T11: 0.2123 T22: 0.3114 REMARK 3 T33: 0.2907 T12: 0.0331 REMARK 3 T13: 0.0949 T23: 0.0431 REMARK 3 L TENSOR REMARK 3 L11: 1.2497 L22: 1.5888 REMARK 3 L33: 0.9861 L12: -0.4512 REMARK 3 L13: 0.2496 L23: 1.0932 REMARK 3 S TENSOR REMARK 3 S11: -0.0764 S12: 0.3057 S13: -0.1673 REMARK 3 S21: -0.0809 S22: -0.0906 S23: -0.0168 REMARK 3 S31: 0.1310 S32: 0.2509 S33: 0.1312 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 837 THROUGH 854 ) OR CHAIN 'C' REMARK 3 AND (RESID 857 THROUGH 874) OR CHAIN 'A' AND (RESID REMARK 3 901 THROUGH 903) REMARK 3 ORIGIN FOR THE GROUP (A): 118.5295 7.7544 132.7929 REMARK 3 T TENSOR REMARK 3 T11: 0.3971 T22: 0.2981 REMARK 3 T33: 0.1665 T12: 0.0242 REMARK 3 T13: 0.0275 T23: 0.0107 REMARK 3 L TENSOR REMARK 3 L11: 1.0269 L22: 1.0833 REMARK 3 L33: 0.4720 L12: -0.9846 REMARK 3 L13: 0.7964 L23: -0.7123 REMARK 3 S TENSOR REMARK 3 S11: 0.0949 S12: 0.0923 S13: -0.0706 REMARK 3 S21: 0.0132 S22: -0.1167 S23: 0.0104 REMARK 3 S31: 0.0016 S32: 0.1932 S33: 0.0088 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5YUY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 30-NOV-17. REMARK 100 THE DEPOSITION ID IS D_1300005349. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-SEP-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95372 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 130 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 110068 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.740 REMARK 200 RESOLUTION RANGE LOW (A) : 54.870 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.74 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.83 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.58700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4IR1 REMARK 200 REMARK 200 REMARK: THE ENTRY CONTAINS FRIEDEL PAIRS IN I/F_PLUS/MINUS REMARK 200 COLUMNS. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.66 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% MPD , PH 5.2, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 28.52500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5930 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20900 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -61.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: F, G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6160 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21240 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -63.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN F 342 REMARK 465 MET F 343 REMARK 465 GLU F 344 REMARK 465 ARG F 345 REMARK 465 GLN F 346 REMARK 465 LEU F 347 REMARK 465 VAL F 348 REMARK 465 LEU F 349 REMARK 465 GLY F 350 REMARK 465 LEU F 351 REMARK 465 GLN A 342 REMARK 465 MET A 343 REMARK 465 GLU A 344 REMARK 465 ARG A 345 REMARK 465 GLN A 346 REMARK 465 LEU A 347 REMARK 465 VAL A 348 REMARK 465 LEU A 349 REMARK 465 GLY A 350 REMARK 465 LEU A 351 REMARK 465 DT H 856 REMARK 465 DC H 857 REMARK 465 DT C 856 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS F 64 CG CD CE NZ REMARK 470 LYS A 64 CG CD CE NZ REMARK 470 DC C 857 P OP1 OP2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1016 O HOH A 1155 1.81 REMARK 500 O HOH F 1277 O HOH F 1287 1.87 REMARK 500 O HOH A 1126 O HOH A 1343 1.89 REMARK 500 O HOH F 1001 O HOH F 1003 1.89 REMARK 500 O HOH A 1341 O HOH G 941 1.90 REMARK 500 O HOH B 948 O HOH B 951 1.91 REMARK 500 O HOH F 1223 O HOH F 1310 1.92 REMARK 500 NH1 ARG F 327 O HOH F 1001 1.94 REMARK 500 O HOH H 1027 O HOH H 1040 1.95 REMARK 500 O HOH B 944 O HOH B 953 1.96 REMARK 500 O HOH A 1323 O HOH C 1037 1.96 REMARK 500 NZ LYS A 291 O HOH A 1001 1.98 REMARK 500 O HOH A 1213 O HOH A 1270 1.99 REMARK 500 O HOH A 1270 O HOH A 1343 1.99 REMARK 500 O HOH A 1054 O HOH A 1266 1.99 REMARK 500 O HOH F 1258 O HOH F 1337 1.99 REMARK 500 O HOH A 1144 O HOH A 1242 1.99 REMARK 500 O HOH A 1201 O HOH A 1303 2.02 REMARK 500 O HOH A 1001 O HOH A 1242 2.03 REMARK 500 O HOH A 1248 O HOH A 1372 2.04 REMARK 500 O HOH A 1281 O HOH A 1325 2.05 REMARK 500 O HOH F 1213 O HOH F 1338 2.05 REMARK 500 O HOH F 1347 O HOH F 1355 2.06 REMARK 500 O HOH A 1090 O HOH A 1323 2.06 REMARK 500 OP2 DT C 858 O HOH C 1001 2.06 REMARK 500 OP2 DG C 861 O HOH C 1002 2.08 REMARK 500 O HOH B 932 O HOH B 943 2.08 REMARK 500 O HOH F 1077 O HOH F 1318 2.09 REMARK 500 O HOH F 1318 O HOH H 1030 2.09 REMARK 500 O HOH A 1165 O HOH A 1240 2.09 REMARK 500 O HOH A 1295 O HOH A 1371 2.09 REMARK 500 O HOH F 1267 O HOH F 1278 2.10 REMARK 500 O HOH F 1291 O HOH F 1341 2.11 REMARK 500 OD2 ASP F 8 O HOH F 1002 2.11 REMARK 500 OP2 DA G 840 O HOH G 901 2.12 REMARK 500 O HOH A 1323 O HOH B 947 2.12 REMARK 500 O HOH A 1051 O HOH A 1323 2.13 REMARK 500 O HOH A 1293 O HOH C 1066 2.13 REMARK 500 O HOH F 1301 O HOH F 1318 2.13 REMARK 500 OD1 ASP A 207 O HOH A 1002 2.13 REMARK 500 O HOH F 1318 O HOH H 1019 2.13 REMARK 500 O HOH A 1186 O HOH A 1344 2.13 REMARK 500 O HOH A 1323 O HOH C 1030 2.14 REMARK 500 OD2 ASP F 294 O HOH F 1003 2.14 REMARK 500 OE2 GLU F 271 O HOH F 1004 2.15 REMARK 500 O HOH A 1024 O HOH A 1264 2.15 REMARK 500 O HOH A 1254 O HOH A 1278 2.17 REMARK 500 O HOH A 1282 O HOH C 1012 2.17 REMARK 500 O HOH F 1075 O HOH F 1318 2.17 REMARK 500 O HOH A 1080 O HOH A 1311 2.18 REMARK 500 REMARK 500 THIS ENTRY HAS 55 CLOSE CONTACTS REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH F 1323 O HOH H 1053 2758 1.95 REMARK 500 O HOH F 1285 O HOH B 932 2858 2.04 REMARK 500 O HOH F 1109 O HOH H 1037 2758 2.05 REMARK 500 O HOH F 1232 O HOH F 1271 2758 2.06 REMARK 500 O HOH F 1338 O HOH B 952 2858 2.13 REMARK 500 O HOH F 1213 O HOH B 952 2858 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DC H 873 P DC H 873 O5' 0.063 REMARK 500 DC H 873 C4' DC H 873 C3' 0.098 REMARK 500 DC H 873 C3' DC H 873 C2' -0.224 REMARK 500 DC H 873 O4' DC H 873 C1' 0.130 REMARK 500 DC H 873 O4' DC H 873 C4' -0.163 REMARK 500 DC H 873 C1' DC H 873 N1 -0.097 REMARK 500 DC H 873 C4 DC H 873 N4 0.124 REMARK 500 DC H 873 N1 DC H 873 C2 -0.063 REMARK 500 DC H 873 N1 DC H 873 C6 -0.036 REMARK 500 DC H 873 C5 DC H 873 C6 0.051 REMARK 500 DT B 839 O3' DT B 839 C3' -0.038 REMARK 500 DC C 873 P DC C 873 O5' 0.069 REMARK 500 DC C 873 C4' DC C 873 C3' 0.108 REMARK 500 DC C 873 C3' DC C 873 C2' -0.220 REMARK 500 DC C 873 O4' DC C 873 C1' 0.136 REMARK 500 DC C 873 O4' DC C 873 C4' -0.150 REMARK 500 DC C 873 O3' DC C 873 C3' 0.101 REMARK 500 DC C 873 C1' DC C 873 N1 -0.089 REMARK 500 DC C 873 C4 DC C 873 N4 0.120 REMARK 500 DC C 873 N1 DC C 873 C2 -0.064 REMARK 500 DC C 873 C5 DC C 873 C6 0.057 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DA G 848 O4' - C1' - N9 ANGL. DEV. = 2.2 DEGREES REMARK 500 DA H 859 O4' - C1' - N9 ANGL. DEV. = 2.0 DEGREES REMARK 500 DG H 860 O4' - C1' - N9 ANGL. DEV. = 3.5 DEGREES REMARK 500 DG H 869 O4' - C1' - N9 ANGL. DEV. = 3.0 DEGREES REMARK 500 DC H 872 C3' - O3' - P ANGL. DEV. = -10.2 DEGREES REMARK 500 DC H 873 O3' - P - OP2 ANGL. DEV. = 12.4 DEGREES REMARK 500 DC H 873 N3 - C4 - C5 ANGL. DEV. = -3.5 DEGREES REMARK 500 DC B 838 O4' - C1' - N1 ANGL. DEV. = 2.3 DEGREES REMARK 500 DG B 850 O4' - C1' - N9 ANGL. DEV. = 3.5 DEGREES REMARK 500 DC C 857 O4' - C1' - N1 ANGL. DEV. = 2.3 DEGREES REMARK 500 DT C 866 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 DC C 873 OP1 - P - OP2 ANGL. DEV. = -9.3 DEGREES REMARK 500 DC C 873 O4' - C1' - N1 ANGL. DEV. = 2.9 DEGREES REMARK 500 DC C 873 N3 - C4 - C5 ANGL. DEV. = -3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS F 11 57.41 36.38 REMARK 500 SER F 101 -177.04 -172.77 REMARK 500 ASP F 230 89.61 -162.83 REMARK 500 SER A 101 -176.77 -170.49 REMARK 500 ASP A 230 89.15 -164.16 REMARK 500 LYS A 278 83.47 -151.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH F1367 DISTANCE = 6.09 ANGSTROMS REMARK 525 HOH F1368 DISTANCE = 6.23 ANGSTROMS REMARK 525 HOH F1369 DISTANCE = 7.37 ANGSTROMS REMARK 525 HOH A1382 DISTANCE = 5.85 ANGSTROMS REMARK 525 HOH A1383 DISTANCE = 5.92 ANGSTROMS REMARK 525 HOH A1384 DISTANCE = 6.14 ANGSTROMS REMARK 525 HOH A1385 DISTANCE = 6.47 ANGSTROMS REMARK 525 HOH A1386 DISTANCE = 7.23 ANGSTROMS REMARK 525 HOH H1061 DISTANCE = 6.61 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG F 901 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP F 8 OD1 REMARK 620 2 ASP F 8 OD1 34.9 REMARK 620 3 MET F 9 O 77.4 94.3 REMARK 620 4 ASP F 103 OD2 109.7 80.1 88.0 REMARK 620 5 DPO F 903 O3 81.8 112.0 91.0 167.8 REMARK 620 6 DPO F 903 O7 155.5 168.5 87.5 88.7 79.2 REMARK 620 7 DT H 874 OP1 104.3 83.4 171.9 83.9 97.1 93.3 REMARK 620 8 TTP H 901 O2A 108.0 85.4 168.3 80.4 100.0 90.5 4.4 REMARK 620 9 TTP H 901 O2B 155.4 168.4 87.2 88.5 79.4 0.4 93.6 90.8 REMARK 620 N 1 2 3 4 5 6 7 8 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG F 902 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP F 8 OD1 REMARK 620 2 ASP F 8 OD2 35.6 REMARK 620 3 ASP F 103 OD1 88.7 121.1 REMARK 620 4 GLU F 104 OE2 108.5 79.7 117.7 REMARK 620 5 HOH F1002 O 81.4 49.1 170.0 65.4 REMARK 620 6 DC H 873 O3' 135.0 122.9 110.2 98.3 77.9 REMARK 620 7 DC H 873 O3' 151.2 140.4 96.6 94.1 92.6 18.9 REMARK 620 8 DT H 874 OP1 84.8 93.5 99.6 140.0 80.4 52.7 66.4 REMARK 620 9 TTP H 901 O2A 80.3 93.3 93.2 147.4 86.0 58.8 71.1 7.7 REMARK 620 N 1 2 3 4 5 6 7 8 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 901 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 8 OD1 REMARK 620 2 ASP A 8 OD2 50.3 REMARK 620 3 MET A 9 O 103.2 74.7 REMARK 620 4 ASP A 103 OD2 82.3 120.6 86.4 REMARK 620 5 DPO A 903 O3 111.7 77.0 100.1 162.4 REMARK 620 6 DPO A 903 O5 163.5 143.7 91.2 90.9 72.7 REMARK 620 7 DT C 874 OP1 74.6 107.0 174.4 88.2 85.5 90.2 REMARK 620 8 TTP C 901 O3G 106.8 69.6 95.9 169.8 7.7 79.1 89.7 REMARK 620 9 TTP C 901 O1A 76.8 113.2 167.4 81.1 91.5 87.4 7.7 96.1 REMARK 620 N 1 2 3 4 5 6 7 8 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 902 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 8 OD1 REMARK 620 2 ASP A 103 OD1 92.0 REMARK 620 3 GLU A 104 OE2 123.9 109.1 REMARK 620 4 HOH A1075 O 84.9 176.8 73.4 REMARK 620 5 DC C 873 O3' 137.1 100.6 90.3 81.3 REMARK 620 6 DC C 873 O3' 146.9 91.3 85.6 90.9 12.4 REMARK 620 7 DT C 874 OP1 84.6 91.6 142.5 87.3 54.5 62.4 REMARK 620 8 TTP C 901 O1A 83.6 83.3 148.0 95.6 57.9 64.2 8.4 REMARK 620 N 1 2 3 4 5 6 7 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG F 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG F 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DPO F 903 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DPO A 903 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-nucleotide TTP C 901 and DC REMARK 800 C 873 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-nucleotide TTP H 901 and DC REMARK 800 H 873 DBREF 5YUY F 2 351 UNP Q47155 DPO4_ECOLI 2 351 DBREF 5YUY A 2 351 UNP Q47155 DPO4_ECOLI 2 351 DBREF 5YUY G 837 854 PDB 5YUY 5YUY 837 854 DBREF 5YUY H 856 874 PDB 5YUY 5YUY 856 874 DBREF 5YUY B 837 854 PDB 5YUY 5YUY 837 854 DBREF 5YUY C 856 874 PDB 5YUY 5YUY 856 874 SEQADV 5YUY GLY F 0 UNP Q47155 EXPRESSION TAG SEQADV 5YUY SER F 1 UNP Q47155 EXPRESSION TAG SEQADV 5YUY GLY A 0 UNP Q47155 EXPRESSION TAG SEQADV 5YUY SER A 1 UNP Q47155 EXPRESSION TAG SEQRES 1 F 352 GLY SER ARG LYS ILE ILE HIS VAL ASP MET ASP CYS PHE SEQRES 2 F 352 PHE ALA ALA VAL GLU MET ARG ASP ASN PRO ALA LEU ARG SEQRES 3 F 352 ASP ILE PRO ILE ALA ILE GLY GLY SER ARG GLU ARG ARG SEQRES 4 F 352 GLY VAL ILE SER THR ALA ASN TYR PRO ALA ARG LYS PHE SEQRES 5 F 352 GLY VAL ARG SER ALA MET PRO THR GLY MET ALA LEU LYS SEQRES 6 F 352 LEU CYS PRO HIS LEU THR LEU LEU PRO GLY ARG PHE ASP SEQRES 7 F 352 ALA TYR LYS GLU ALA SER ASN HIS ILE ARG GLU ILE PHE SEQRES 8 F 352 SER ARG TYR THR SER ARG ILE GLU PRO LEU SER LEU ASP SEQRES 9 F 352 GLU ALA TYR LEU ASP VAL THR ASP SER VAL HIS CYS HIS SEQRES 10 F 352 GLY SER ALA THR LEU ILE ALA GLN GLU ILE ARG GLN THR SEQRES 11 F 352 ILE PHE ASN GLU LEU GLN LEU THR ALA SER ALA GLY VAL SEQRES 12 F 352 ALA PRO VAL LYS PHE LEU ALA LYS ILE ALA SER ASP MET SEQRES 13 F 352 ASN LYS PRO ASN GLY GLN PHE VAL ILE THR PRO ALA GLU SEQRES 14 F 352 VAL PRO ALA PHE LEU GLN THR LEU PRO LEU ALA LYS ILE SEQRES 15 F 352 PRO GLY VAL GLY LYS VAL SER ALA ALA LYS LEU GLU ALA SEQRES 16 F 352 MET GLY LEU ARG THR CYS GLY ASP VAL GLN LYS CYS ASP SEQRES 17 F 352 LEU VAL MET LEU LEU LYS ARG PHE GLY LYS PHE GLY ARG SEQRES 18 F 352 ILE LEU TRP GLU ARG SER GLN GLY ILE ASP GLU ARG ASP SEQRES 19 F 352 VAL ASN SER GLU ARG LEU ARG LYS SER VAL GLY VAL GLU SEQRES 20 F 352 ARG THR MET ALA GLU ASP ILE HIS HIS TRP SER GLU CYS SEQRES 21 F 352 GLU ALA ILE ILE GLU ARG LEU TYR PRO GLU LEU GLU ARG SEQRES 22 F 352 ARG LEU ALA LYS VAL LYS PRO ASP LEU LEU ILE ALA ARG SEQRES 23 F 352 GLN GLY VAL LYS LEU LYS PHE ASP ASP PHE GLN GLN THR SEQRES 24 F 352 THR GLN GLU HIS VAL TRP PRO ARG LEU ASN LYS ALA ASP SEQRES 25 F 352 LEU ILE ALA THR ALA ARG LYS THR TRP ASP GLU ARG ARG SEQRES 26 F 352 GLY GLY ARG GLY VAL ARG LEU VAL GLY LEU HIS VAL THR SEQRES 27 F 352 LEU LEU ASP PRO GLN MET GLU ARG GLN LEU VAL LEU GLY SEQRES 28 F 352 LEU SEQRES 1 A 352 GLY SER ARG LYS ILE ILE HIS VAL ASP MET ASP CYS PHE SEQRES 2 A 352 PHE ALA ALA VAL GLU MET ARG ASP ASN PRO ALA LEU ARG SEQRES 3 A 352 ASP ILE PRO ILE ALA ILE GLY GLY SER ARG GLU ARG ARG SEQRES 4 A 352 GLY VAL ILE SER THR ALA ASN TYR PRO ALA ARG LYS PHE SEQRES 5 A 352 GLY VAL ARG SER ALA MET PRO THR GLY MET ALA LEU LYS SEQRES 6 A 352 LEU CYS PRO HIS LEU THR LEU LEU PRO GLY ARG PHE ASP SEQRES 7 A 352 ALA TYR LYS GLU ALA SER ASN HIS ILE ARG GLU ILE PHE SEQRES 8 A 352 SER ARG TYR THR SER ARG ILE GLU PRO LEU SER LEU ASP SEQRES 9 A 352 GLU ALA TYR LEU ASP VAL THR ASP SER VAL HIS CYS HIS SEQRES 10 A 352 GLY SER ALA THR LEU ILE ALA GLN GLU ILE ARG GLN THR SEQRES 11 A 352 ILE PHE ASN GLU LEU GLN LEU THR ALA SER ALA GLY VAL SEQRES 12 A 352 ALA PRO VAL LYS PHE LEU ALA LYS ILE ALA SER ASP MET SEQRES 13 A 352 ASN LYS PRO ASN GLY GLN PHE VAL ILE THR PRO ALA GLU SEQRES 14 A 352 VAL PRO ALA PHE LEU GLN THR LEU PRO LEU ALA LYS ILE SEQRES 15 A 352 PRO GLY VAL GLY LYS VAL SER ALA ALA LYS LEU GLU ALA SEQRES 16 A 352 MET GLY LEU ARG THR CYS GLY ASP VAL GLN LYS CYS ASP SEQRES 17 A 352 LEU VAL MET LEU LEU LYS ARG PHE GLY LYS PHE GLY ARG SEQRES 18 A 352 ILE LEU TRP GLU ARG SER GLN GLY ILE ASP GLU ARG ASP SEQRES 19 A 352 VAL ASN SER GLU ARG LEU ARG LYS SER VAL GLY VAL GLU SEQRES 20 A 352 ARG THR MET ALA GLU ASP ILE HIS HIS TRP SER GLU CYS SEQRES 21 A 352 GLU ALA ILE ILE GLU ARG LEU TYR PRO GLU LEU GLU ARG SEQRES 22 A 352 ARG LEU ALA LYS VAL LYS PRO ASP LEU LEU ILE ALA ARG SEQRES 23 A 352 GLN GLY VAL LYS LEU LYS PHE ASP ASP PHE GLN GLN THR SEQRES 24 A 352 THR GLN GLU HIS VAL TRP PRO ARG LEU ASN LYS ALA ASP SEQRES 25 A 352 LEU ILE ALA THR ALA ARG LYS THR TRP ASP GLU ARG ARG SEQRES 26 A 352 GLY GLY ARG GLY VAL ARG LEU VAL GLY LEU HIS VAL THR SEQRES 27 A 352 LEU LEU ASP PRO GLN MET GLU ARG GLN LEU VAL LEU GLY SEQRES 28 A 352 LEU SEQRES 1 G 18 DT DC DT DA DG DG DG DT DC DC DT DA DG SEQRES 2 G 18 DG DA DC DC DC SEQRES 1 H 19 DT DC DT DA DG DG DG DT DC DC DT DA DG SEQRES 2 H 19 DG DA DC DC DC DT SEQRES 1 B 18 DT DC DT DA DG DG DG DT DC DC DT DA DG SEQRES 2 B 18 DG DA DC DC DC SEQRES 1 C 19 DT DC DT DA DG DG DG DT DC DC DT DA DG SEQRES 2 C 19 DG DA DC DC DC DT HET MG F 901 1 HET MG F 902 1 HET DPO F 903 9 HET MG A 901 1 HET MG A 902 1 HET DPO A 903 9 HET TTP H 901 29 HET TTP C 901 29 HETNAM MG MAGNESIUM ION HETNAM DPO DIPHOSPHATE HETNAM TTP THYMIDINE-5'-TRIPHOSPHATE FORMUL 7 MG 4(MG 2+) FORMUL 9 DPO 2(O7 P2 4-) FORMUL 13 TTP 2(C10 H17 N2 O14 P3) FORMUL 15 HOH *999(H2 O) HELIX 1 AA1 CYS F 11 ASN F 21 1 11 HELIX 2 AA2 PRO F 22 ARG F 25 5 4 HELIX 3 AA3 ASN F 45 LYS F 50 1 6 HELIX 4 AA4 PRO F 58 CYS F 66 1 9 HELIX 5 AA5 ARG F 75 ARG F 92 1 18 HELIX 6 AA6 VAL F 113 GLY F 117 5 5 HELIX 7 AA7 SER F 118 GLN F 135 1 18 HELIX 8 AA8 VAL F 145 ASN F 156 1 12 HELIX 9 AA9 THR F 165 ALA F 167 5 3 HELIX 10 AB1 GLU F 168 THR F 175 1 8 HELIX 11 AB2 PRO F 177 ILE F 181 5 5 HELIX 12 AB3 GLY F 185 MET F 195 1 11 HELIX 13 AB4 THR F 199 LYS F 205 1 7 HELIX 14 AB5 ASP F 207 GLY F 216 1 10 HELIX 15 AB6 GLY F 216 SER F 226 1 11 HELIX 16 AB7 HIS F 255 LYS F 278 1 24 HELIX 17 AB8 ASN F 308 ARG F 324 1 17 HELIX 18 AB9 CYS A 11 ASN A 21 1 11 HELIX 19 AC1 PRO A 22 ARG A 25 5 4 HELIX 20 AC2 ASN A 45 LYS A 50 1 6 HELIX 21 AC3 PRO A 58 CYS A 66 1 9 HELIX 22 AC4 ARG A 75 SER A 91 1 17 HELIX 23 AC5 VAL A 113 GLY A 117 5 5 HELIX 24 AC6 SER A 118 GLN A 135 1 18 HELIX 25 AC7 VAL A 145 ASP A 154 1 10 HELIX 26 AC8 THR A 165 ALA A 167 5 3 HELIX 27 AC9 GLU A 168 THR A 175 1 8 HELIX 28 AD1 PRO A 177 ILE A 181 5 5 HELIX 29 AD2 GLY A 185 MET A 195 1 11 HELIX 30 AD3 THR A 199 LYS A 205 1 7 HELIX 31 AD4 ASP A 207 GLY A 216 1 10 HELIX 32 AD5 GLY A 216 SER A 226 1 11 HELIX 33 AD6 HIS A 255 LYS A 278 1 24 HELIX 34 AD7 ASN A 308 ARG A 324 1 17 SHEET 1 AA1 5 ILE F 97 SER F 101 0 SHEET 2 AA1 5 GLU F 104 ASP F 108 -1 O TYR F 106 N GLU F 98 SHEET 3 AA1 5 ILE F 4 MET F 9 -1 N ILE F 5 O LEU F 107 SHEET 4 AA1 5 ALA F 138 ALA F 143 -1 O SER F 139 N ASP F 8 SHEET 5 AA1 5 GLN F 161 VAL F 163 1 O PHE F 162 N VAL F 142 SHEET 1 AA2 3 ILE F 41 ALA F 44 0 SHEET 2 AA2 3 ILE F 29 GLY F 32 -1 N ILE F 31 O SER F 42 SHEET 3 AA2 3 THR F 70 LEU F 72 1 O LEU F 72 N ALA F 30 SHEET 1 AA3 4 SER F 242 ILE F 253 0 SHEET 2 AA3 4 VAL F 329 THR F 337 -1 O LEU F 334 N VAL F 245 SHEET 3 AA3 4 ARG F 285 PHE F 292 -1 N GLY F 287 O HIS F 335 SHEET 4 AA3 4 GLN F 297 VAL F 303 -1 O THR F 298 N LEU F 290 SHEET 1 AA4 5 ILE A 97 SER A 101 0 SHEET 2 AA4 5 GLU A 104 ASP A 108 -1 O TYR A 106 N GLU A 98 SHEET 3 AA4 5 ILE A 4 MET A 9 -1 N ILE A 5 O LEU A 107 SHEET 4 AA4 5 ALA A 138 ALA A 143 -1 O SER A 139 N ASP A 8 SHEET 5 AA4 5 GLN A 161 VAL A 163 1 O PHE A 162 N VAL A 142 SHEET 1 AA5 3 ILE A 41 ALA A 44 0 SHEET 2 AA5 3 ILE A 29 GLY A 32 -1 N ILE A 31 O SER A 42 SHEET 3 AA5 3 THR A 70 LEU A 72 1 O LEU A 72 N ALA A 30 SHEET 1 AA6 4 SER A 242 ILE A 253 0 SHEET 2 AA6 4 VAL A 329 THR A 337 -1 O LEU A 334 N VAL A 245 SHEET 3 AA6 4 ARG A 285 PHE A 292 -1 N ARG A 285 O THR A 337 SHEET 4 AA6 4 GLN A 297 VAL A 303 -1 O THR A 298 N LEU A 290 LINK O3'A DC H 873 PA ATTP H 901 1555 1555 1.70 LINK O3'A DC C 873 PA ATTP C 901 1555 1555 1.73 LINK OD1AASP F 8 MG MG F 901 1555 1555 2.17 LINK OD1BASP F 8 MG MG F 901 1555 1555 2.45 LINK OD1BASP F 8 MG MG F 902 1555 1555 2.62 LINK OD2AASP F 8 MG MG F 902 1555 1555 2.62 LINK O MET F 9 MG MG F 901 1555 1555 2.31 LINK OD2 ASP F 103 MG MG F 901 1555 1555 2.36 LINK OD1 ASP F 103 MG MG F 902 1555 1555 2.27 LINK OE2 GLU F 104 MG MG F 902 1555 1555 2.00 LINK MG MG F 901 O3 BDPO F 903 1555 1555 2.51 LINK MG MG F 901 O7 BDPO F 903 1555 1555 2.36 LINK MG MG F 901 OP1B DT H 874 1555 1555 2.31 LINK MG MG F 901 O2AATTP H 901 1555 1555 2.07 LINK MG MG F 901 O2BATTP H 901 1555 1555 2.20 LINK MG MG F 901 O2GATTP H 901 1555 1555 2.37 LINK MG MG F 902 O HOH F1002 1555 1555 2.45 LINK MG MG F 902 O3'A DC H 873 1555 1555 2.51 LINK MG MG F 902 O3'B DC H 873 1555 1555 2.52 LINK MG MG F 902 OP1B DT H 874 1555 1555 2.03 LINK MG MG F 902 O2AATTP H 901 1555 1555 2.12 LINK OD1 ASP A 8 MG MG A 901 1555 1555 2.66 LINK OD2 ASP A 8 MG MG A 901 1555 1555 2.47 LINK OD1 ASP A 8 MG MG A 902 1555 1555 2.22 LINK O MET A 9 MG MG A 901 1555 1555 2.29 LINK OD2 ASP A 103 MG MG A 901 1555 1555 2.32 LINK OD1 ASP A 103 MG MG A 902 1555 1555 2.41 LINK OE2 GLU A 104 MG MG A 902 1555 1555 2.15 LINK MG MG A 901 O3 BDPO A 903 1555 1555 2.58 LINK MG MG A 901 O5 BDPO A 903 1555 1555 2.57 LINK MG MG A 901 OP1B DT C 874 1555 1555 2.26 LINK MG MG A 901 O3GATTP C 901 1555 1555 2.44 LINK MG MG A 901 O1AATTP C 901 1555 1555 2.11 LINK MG MG A 901 O1BATTP C 901 1555 1555 2.24 LINK MG MG A 902 O HOH A1075 1555 1555 2.32 LINK MG MG A 902 O3'A DC C 873 1555 1555 2.56 LINK MG MG A 902 O3'B DC C 873 1555 1555 2.59 LINK MG MG A 902 OP1B DT C 874 1555 1555 2.24 LINK MG MG A 902 O1AATTP C 901 1555 1555 2.27 CISPEP 1 LYS F 157 PRO F 158 0 -3.61 CISPEP 2 LYS A 157 PRO A 158 0 -0.01 SITE 1 AC1 7 ASP F 8 MET F 9 ASP F 103 MG F 902 SITE 2 AC1 7 DPO F 903 DT H 874 TTP H 901 SITE 1 AC2 8 ASP F 8 ASP F 103 GLU F 104 MG F 901 SITE 2 AC2 8 HOH F1002 DC H 873 DT H 874 TTP H 901 SITE 1 AC3 15 ASP F 8 MET F 9 ASP F 10 CYS F 11 SITE 2 AC3 15 PHE F 12 THR F 43 ARG F 49 ASP F 103 SITE 3 AC3 15 LYS F 157 MG F 901 HOH F1010 HOH F1042 SITE 4 AC3 15 HOH F1046 DT H 874 TTP H 901 SITE 1 AC4 7 ASP A 8 MET A 9 ASP A 103 MG A 902 SITE 2 AC4 7 DPO A 903 DT C 874 TTP C 901 SITE 1 AC5 8 ASP A 8 ASP A 103 GLU A 104 MG A 901 SITE 2 AC5 8 HOH A1075 DC C 873 DT C 874 TTP C 901 SITE 1 AC6 15 ASP A 8 MET A 9 ASP A 10 CYS A 11 SITE 2 AC6 15 PHE A 12 THR A 43 ARG A 49 ASP A 103 SITE 3 AC6 15 LYS A 157 MG A 901 HOH A1022 HOH A1103 SITE 4 AC6 15 DT C 874 TTP C 901 HOH C1034 SITE 1 AC7 31 ASP A 8 MET A 9 ASP A 10 CYS A 11 SITE 2 AC7 31 PHE A 12 PHE A 13 SER A 42 THR A 43 SITE 3 AC7 31 ARG A 49 SER A 55 ASP A 103 GLU A 104 SITE 4 AC7 31 LYS A 150 LYS A 157 MG A 901 MG A 902 SITE 5 AC7 31 DPO A 903 HOH A1022 DA B 840 DG B 841 SITE 6 AC7 31 DG B 842 DC C 872 DT C 874 HOH C1017 SITE 7 AC7 31 HOH C1020 HOH C1025 HOH C1034 HOH C1041 SITE 8 AC7 31 HOH C1044 HOH C1045 HOH C1052 SITE 1 AC8 31 ASP F 8 MET F 9 ASP F 10 CYS F 11 SITE 2 AC8 31 PHE F 12 PHE F 13 SER F 42 THR F 43 SITE 3 AC8 31 ARG F 49 SER F 101 ASP F 103 GLU F 104 SITE 4 AC8 31 LYS F 150 LYS F 157 MG F 901 MG F 902 SITE 5 AC8 31 DPO F 903 HOH F1010 HOH F1023 HOH F1046 SITE 6 AC8 31 DA G 840 DG G 841 DG G 842 DC H 872 SITE 7 AC8 31 DT H 874 HOH H1004 HOH H1010 HOH H1012 SITE 8 AC8 31 HOH H1018 HOH H1024 HOH H1028 CRYST1 86.460 57.050 110.170 90.00 95.03 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011566 0.000000 0.001018 0.00000 SCALE2 0.000000 0.017528 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009112 0.00000