HEADER DNA BINDING PROTEIN/DNA 23-NOV-17 5YV0 TITLE DNA POLYMERASE IV - DNA TERNARY COMPLEX 12 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA POLYMERASE IV; COMPND 3 CHAIN: F, A; COMPND 4 SYNONYM: POL IV,TRANSLESION SYNTHESIS POLYMERASE IV,TSL POLYMERASE COMPND 5 IV; COMPND 6 EC: 2.7.7.7; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: DTN1; COMPND 10 CHAIN: G, B; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: DTN2; COMPND 14 CHAIN: H, C; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI K-12; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K-12; SOURCE 5 GENE: DINB, DINP, B0231, JW0221; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI K-12; SOURCE 11 ORGANISM_TAXID: 83333; SOURCE 12 MOL_ID: 3; SOURCE 13 SYNTHETIC: YES; SOURCE 14 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI K-12; SOURCE 15 ORGANISM_TAXID: 83333 KEYWDS DNA POLYMERASE, DNA BINDING PROTEIN-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.KOTTUR,D.T.NAIR REVDAT 2 22-NOV-23 5YV0 1 LINK REVDAT 1 14-NOV-18 5YV0 0 JRNL AUTH J.KOTTUR,D.T.NAIR JRNL TITL PYROPHOSPHATE HYDROLYSIS IS AN INTRINSIC AND CRITICAL STEP JRNL TITL 2 OF THE DNA SYNTHESIS REACTION. JRNL REF NUCLEIC ACIDS RES. V. 46 5875 2018 JRNL REFN ESSN 1362-4962 JRNL PMID 29850882 JRNL DOI 10.1093/NAR/GKY402 REMARK 2 REMARK 2 RESOLUTION. 2.09 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.09 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.73 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.060 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 63659 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 6268 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.7354 - 6.4877 0.99 3853 230 0.1461 0.1592 REMARK 3 2 6.4877 - 5.1519 1.00 3908 210 0.1679 0.1937 REMARK 3 3 5.1519 - 4.5014 1.00 3929 229 0.1522 0.2032 REMARK 3 4 4.5014 - 4.0901 1.00 3906 175 0.1472 0.1961 REMARK 3 5 4.0901 - 3.7971 1.00 3938 226 0.1619 0.2383 REMARK 3 6 3.7971 - 3.5734 1.00 3879 217 0.1673 0.2248 REMARK 3 7 3.5734 - 3.3945 1.00 3970 212 0.1649 0.2032 REMARK 3 8 3.3945 - 3.2468 1.00 3939 171 0.1681 0.2110 REMARK 3 9 3.2468 - 3.1218 1.00 3934 189 0.1833 0.2635 REMARK 3 10 3.1218 - 3.0141 1.00 3932 215 0.2082 0.2605 REMARK 3 11 3.0141 - 2.9199 1.00 3977 174 0.2145 0.2742 REMARK 3 12 2.9199 - 2.8364 1.00 3928 199 0.2170 0.2634 REMARK 3 13 2.8364 - 2.7618 1.00 3882 248 0.2207 0.2623 REMARK 3 14 2.7618 - 2.6944 1.00 3876 218 0.2278 0.2815 REMARK 3 15 2.6944 - 2.6331 1.00 3941 217 0.2327 0.3306 REMARK 3 16 2.6331 - 2.5771 1.00 3913 209 0.2314 0.2956 REMARK 3 17 2.5771 - 2.5256 1.00 3898 217 0.2315 0.2948 REMARK 3 18 2.5256 - 2.4779 1.00 3911 203 0.2324 0.2885 REMARK 3 19 2.4779 - 2.4337 1.00 3950 210 0.2227 0.2579 REMARK 3 20 2.4337 - 2.3924 1.00 3880 214 0.2354 0.2775 REMARK 3 21 2.3924 - 2.3538 1.00 3971 208 0.2365 0.2889 REMARK 3 22 2.3538 - 2.3176 1.00 3893 241 0.2456 0.3027 REMARK 3 23 2.3176 - 2.2835 1.00 3862 211 0.2592 0.3283 REMARK 3 24 2.2835 - 2.2514 1.00 3973 167 0.2877 0.3196 REMARK 3 25 2.2514 - 2.2209 1.00 4002 220 0.3103 0.3696 REMARK 3 26 2.2209 - 2.1921 1.00 3811 214 0.2732 0.3199 REMARK 3 27 2.1921 - 2.1647 1.00 3933 228 0.2710 0.3285 REMARK 3 28 2.1647 - 2.1386 1.00 3978 192 0.2760 0.3224 REMARK 3 29 2.1386 - 2.1138 1.00 3855 204 0.2902 0.3479 REMARK 3 30 2.1138 - 2.0900 1.00 4010 200 0.3086 0.3361 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.280 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.740 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 7077 REMARK 3 ANGLE : 1.120 9860 REMARK 3 CHIRALITY : 0.056 1100 REMARK 3 PLANARITY : 0.007 1033 REMARK 3 DIHEDRAL : 20.824 4085 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'F' AND (RESID 0 THROUGH 10 OR RESID 76 REMARK 3 THROUGH 164 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.5465 -14.6020 -70.0541 REMARK 3 T TENSOR REMARK 3 T11: 0.2373 T22: 0.2184 REMARK 3 T33: 0.3945 T12: -0.0275 REMARK 3 T13: 0.0787 T23: -0.0132 REMARK 3 L TENSOR REMARK 3 L11: 1.3436 L22: 1.9750 REMARK 3 L33: 1.6666 L12: -0.2715 REMARK 3 L13: 0.0722 L23: -0.3749 REMARK 3 S TENSOR REMARK 3 S11: -0.0537 S12: 0.1755 S13: 0.0146 REMARK 3 S21: -0.3347 S22: 0.0083 S23: -0.5736 REMARK 3 S31: 0.1084 S32: 0.0656 S33: 0.0430 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'F' AND (RESID 11 THROUGH 75 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.7751 2.6427 -69.3005 REMARK 3 T TENSOR REMARK 3 T11: 0.3032 T22: 0.2470 REMARK 3 T33: 0.5107 T12: 0.0153 REMARK 3 T13: -0.0975 T23: 0.0199 REMARK 3 L TENSOR REMARK 3 L11: 0.9616 L22: 1.9265 REMARK 3 L33: 0.8028 L12: -0.1210 REMARK 3 L13: 0.7083 L23: 0.2398 REMARK 3 S TENSOR REMARK 3 S11: -0.1057 S12: 0.1304 S13: 0.6482 REMARK 3 S21: -0.2837 S22: -0.1311 S23: 0.1842 REMARK 3 S31: -0.2849 S32: -0.1758 S33: 0.1928 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'F' AND (RESID 165 THROUGH 229 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.1524 -15.3217 -44.4889 REMARK 3 T TENSOR REMARK 3 T11: 0.3273 T22: 0.2507 REMARK 3 T33: 0.4529 T12: 0.0505 REMARK 3 T13: -0.0805 T23: -0.0658 REMARK 3 L TENSOR REMARK 3 L11: 1.6247 L22: 1.7870 REMARK 3 L33: 1.2967 L12: -0.5460 REMARK 3 L13: 0.3072 L23: -0.0544 REMARK 3 S TENSOR REMARK 3 S11: -0.2836 S12: -0.2773 S13: 0.0878 REMARK 3 S21: 0.5257 S22: 0.0570 S23: -0.3329 REMARK 3 S31: -0.0654 S32: -0.0446 S33: 0.2095 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'F' AND (RESID 241 THROUGH 341 ) REMARK 3 ORIGIN FOR THE GROUP (A): -30.7966 -19.6515 -64.0835 REMARK 3 T TENSOR REMARK 3 T11: 0.1438 T22: 0.4445 REMARK 3 T33: 0.2893 T12: -0.0583 REMARK 3 T13: 0.0219 T23: -0.1339 REMARK 3 L TENSOR REMARK 3 L11: 1.7588 L22: 2.1253 REMARK 3 L33: 1.6901 L12: 0.1749 REMARK 3 L13: 0.3710 L23: -0.4952 REMARK 3 S TENSOR REMARK 3 S11: -0.1421 S12: -0.2522 S13: 0.3888 REMARK 3 S21: -0.1371 S22: 0.1367 S23: 0.2614 REMARK 3 S31: 0.1952 S32: -0.5428 S33: 0.0116 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 0 THROUGH 10 OR RESID 76 REMARK 3 THROUGH 164 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.9208 -8.8393 3.3132 REMARK 3 T TENSOR REMARK 3 T11: 0.5761 T22: 0.3865 REMARK 3 T33: 0.3156 T12: 0.0620 REMARK 3 T13: -0.1145 T23: 0.0113 REMARK 3 L TENSOR REMARK 3 L11: 1.3276 L22: 1.1602 REMARK 3 L33: 1.2982 L12: 0.0950 REMARK 3 L13: 0.1350 L23: 0.3180 REMARK 3 S TENSOR REMARK 3 S11: 0.0563 S12: -0.1087 S13: -0.1220 REMARK 3 S21: 0.4161 S22: 0.0045 S23: -0.2986 REMARK 3 S31: 0.1570 S32: 0.2884 S33: -0.0450 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 11 THROUGH 75 ) REMARK 3 ORIGIN FOR THE GROUP (A): -25.5795 8.0470 -14.5687 REMARK 3 T TENSOR REMARK 3 T11: 0.6538 T22: 0.3831 REMARK 3 T33: 0.3329 T12: -0.0582 REMARK 3 T13: -0.0053 T23: -0.0196 REMARK 3 L TENSOR REMARK 3 L11: 0.9091 L22: 1.2936 REMARK 3 L33: 1.1801 L12: -0.0404 REMARK 3 L13: -0.1529 L23: 0.1032 REMARK 3 S TENSOR REMARK 3 S11: 0.1266 S12: 0.1292 S13: 0.1343 REMARK 3 S21: 0.1097 S22: -0.0283 S23: -0.1123 REMARK 3 S31: -0.7009 S32: 0.4995 S33: -0.1192 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 165 THROUGH 229 ) REMARK 3 ORIGIN FOR THE GROUP (A): -52.6559 -9.5201 -4.5802 REMARK 3 T TENSOR REMARK 3 T11: 0.5582 T22: 0.3581 REMARK 3 T33: 0.2600 T12: -0.0028 REMARK 3 T13: 0.0199 T23: 0.0193 REMARK 3 L TENSOR REMARK 3 L11: 1.0159 L22: 1.3335 REMARK 3 L33: 0.9965 L12: -0.0629 REMARK 3 L13: 0.0608 L23: -0.2643 REMARK 3 S TENSOR REMARK 3 S11: 0.1210 S12: -0.0518 S13: -0.0335 REMARK 3 S21: -0.0658 S22: -0.0310 S23: 0.3441 REMARK 3 S31: 0.0665 S32: -0.1571 S33: -0.0777 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 241 THROUGH 341 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.7262 -15.5463 -32.4644 REMARK 3 T TENSOR REMARK 3 T11: 0.4222 T22: 0.4282 REMARK 3 T33: 0.2720 T12: 0.1442 REMARK 3 T13: 0.0414 T23: 0.0000 REMARK 3 L TENSOR REMARK 3 L11: 1.3715 L22: 1.8903 REMARK 3 L33: 2.2335 L12: -0.1870 REMARK 3 L13: 0.0760 L23: 0.2997 REMARK 3 S TENSOR REMARK 3 S11: -0.0851 S12: 0.0357 S13: -0.2353 REMARK 3 S21: 0.1416 S22: -0.0839 S23: -0.1098 REMARK 3 S31: 0.3222 S32: 0.3002 S33: 0.1446 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 860 THROUGH 874 ) OR CHAIN 'G' REMARK 3 AND (RESID 838 THROUGH 854) OR CHAIN 'F' AND (RESID REMARK 3 901 THROUGH 904) REMARK 3 ORIGIN FOR THE GROUP (A): -18.5835 -24.8042 -52.8870 REMARK 3 T TENSOR REMARK 3 T11: 0.1980 T22: 0.3463 REMARK 3 T33: 0.3317 T12: 0.0021 REMARK 3 T13: 0.0670 T23: -0.0049 REMARK 3 L TENSOR REMARK 3 L11: 2.6456 L22: 2.1435 REMARK 3 L33: 1.3446 L12: 0.5677 REMARK 3 L13: 0.2530 L23: -0.9964 REMARK 3 S TENSOR REMARK 3 S11: -0.0471 S12: -0.4809 S13: -0.3529 REMARK 3 S21: 0.0327 S22: -0.1059 S23: -0.1073 REMARK 3 S31: 0.1092 S32: -0.1799 S33: 0.1478 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 838 THROUGH 854 ) OR CHAIN 'C' REMARK 3 AND (RESID 857 THROUGH 874) OR CHAIN 'A' AND (RESID REMARK 3 901 THROUGH 903) REMARK 3 ORIGIN FOR THE GROUP (A): -41.8880 -20.0860 -23.1246 REMARK 3 T TENSOR REMARK 3 T11: 0.5764 T22: 0.4396 REMARK 3 T33: 0.3120 T12: -0.0011 REMARK 3 T13: -0.0012 T23: -0.0505 REMARK 3 L TENSOR REMARK 3 L11: 0.7496 L22: 1.9600 REMARK 3 L33: 0.4886 L12: 1.2100 REMARK 3 L13: 0.6030 L23: 0.9787 REMARK 3 S TENSOR REMARK 3 S11: 0.1321 S12: 0.0060 S13: -0.0211 REMARK 3 S21: 0.0703 S22: -0.1668 S23: 0.0820 REMARK 3 S31: 0.0704 S32: -0.2258 S33: 0.0334 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5YV0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 30-NOV-17. REMARK 100 THE DEPOSITION ID IS D_1300005354. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-SEP-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95372 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 130 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 63701 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.090 REMARK 200 RESOLUTION RANGE LOW (A) : 65.230 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : 0.07100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.09 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.20 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.60 REMARK 200 R MERGE FOR SHELL (I) : 0.59500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4IR1 REMARK 200 REMARK 200 REMARK: THE ENTRY CONTAINS FRIEDEL PAIRS IN F_PLUS/MINUS COLUMNS. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.67 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.65 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% MPD , PH 5.2, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 28.56000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5310 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20200 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -78.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: F, G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6000 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21080 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -62.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN F 342 REMARK 465 MET F 343 REMARK 465 GLU F 344 REMARK 465 ARG F 345 REMARK 465 GLN F 346 REMARK 465 LEU F 347 REMARK 465 VAL F 348 REMARK 465 LEU F 349 REMARK 465 GLY F 350 REMARK 465 LEU F 351 REMARK 465 GLN A 342 REMARK 465 MET A 343 REMARK 465 GLU A 344 REMARK 465 ARG A 345 REMARK 465 GLN A 346 REMARK 465 LEU A 347 REMARK 465 VAL A 348 REMARK 465 LEU A 349 REMARK 465 GLY A 350 REMARK 465 LEU A 351 REMARK 465 DT G 837 REMARK 465 DT H 856 REMARK 465 DC H 857 REMARK 465 DT H 858 REMARK 465 DA H 859 REMARK 465 DT B 837 REMARK 465 DT C 856 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS F 64 CG CD CE NZ REMARK 470 LYS F 205 CG CD CE NZ REMARK 470 LYS A 64 CG CD CE NZ REMARK 470 LYS A 205 CG CD CE NZ REMARK 470 DG H 860 P OP1 OP2 REMARK 470 DC C 857 P OP1 OP2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OP2 DT C 863 O HOH C 1001 2.11 REMARK 500 O6 DG C 862 O HOH C 1002 2.13 REMARK 500 OP2 DT B 847 O HOH B 901 2.15 REMARK 500 NH1 ARG F 285 OP2 DT H 866 2.16 REMARK 500 O HOH F 1079 O HOH F 1134 2.17 REMARK 500 N6 DA C 859 O HOH C 1003 2.17 REMARK 500 O HOH A 1046 O HOH B 916 2.17 REMARK 500 O4 DT H 866 O HOH H 901 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH F 1141 O HOH A 1108 2444 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DT G 839 O3' DT G 839 C3' -0.060 REMARK 500 DT H 866 O3' DT H 866 C3' -0.047 REMARK 500 DG H 869 O3' DG H 869 C3' -0.041 REMARK 500 DC C 873 P DC C 873 O5' 0.068 REMARK 500 DC C 873 C5' DC C 873 C4' -0.127 REMARK 500 DC C 873 C3' DC C 873 C2' -0.196 REMARK 500 DC C 873 C2' DC C 873 C1' 0.153 REMARK 500 DC C 873 O4' DC C 873 C1' -0.112 REMARK 500 DC C 873 O4' DC C 873 C4' 0.135 REMARK 500 DC C 873 C4 DC C 873 N4 0.129 REMARK 500 DC C 873 N1 DC C 873 C2 -0.074 REMARK 500 DC C 873 N1 DC C 873 C6 -0.039 REMARK 500 DC C 873 C5 DC C 873 C6 0.056 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG G 842 O4' - C1' - N9 ANGL. DEV. = 2.6 DEGREES REMARK 500 DC G 853 O4' - C1' - N1 ANGL. DEV. = 3.0 DEGREES REMARK 500 DG H 869 O4' - C1' - N9 ANGL. DEV. = 2.8 DEGREES REMARK 500 DC H 872 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 DT H 874 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 DC C 872 C3' - O3' - P ANGL. DEV. = -7.3 DEGREES REMARK 500 DC C 873 O3' - P - O5' ANGL. DEV. = 16.7 DEGREES REMARK 500 DC C 873 OP1 - P - OP2 ANGL. DEV. = -10.2 DEGREES REMARK 500 DC C 873 O4' - C1' - N1 ANGL. DEV. = 2.4 DEGREES REMARK 500 DC C 873 N3 - C4 - C5 ANGL. DEV. = -2.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU F 133 -41.51 69.35 REMARK 500 PHE F 295 3.63 59.79 REMARK 500 LEU F 307 122.74 -37.33 REMARK 500 ALA A 56 -0.62 77.30 REMARK 500 ASP A 111 54.11 -115.78 REMARK 500 VAL A 113 31.21 -97.25 REMARK 500 GLU A 133 -52.32 65.73 REMARK 500 PHE A 215 -34.88 68.07 REMARK 500 ASP A 230 87.65 -166.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH F1155 DISTANCE = 5.98 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG F 901 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP F 8 OD1 REMARK 620 2 ASP F 8 OD1 25.7 REMARK 620 3 MET F 9 O 75.1 91.7 REMARK 620 4 ASP F 103 OD2 91.0 73.1 84.1 REMARK 620 5 PO4 F 903 O1 164.3 169.5 93.1 98.2 REMARK 620 6 DT H 874 OP1 99.7 81.9 173.0 91.4 92.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG F 902 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP F 8 OD1 REMARK 620 2 ASP F 103 OD1 99.8 REMARK 620 3 GLU F 104 OE1 99.1 121.7 REMARK 620 4 DC H 873 O3' 153.8 96.3 89.8 REMARK 620 5 DT H 874 OP1 93.9 104.6 128.4 61.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 901 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 8 OD1 REMARK 620 2 MET A 9 O 92.1 REMARK 620 3 ASP A 103 OD2 81.5 82.6 REMARK 620 4 DPO A 903 O2 175.0 87.1 93.5 REMARK 620 5 DPO A 903 O5 112.5 99.5 165.6 72.5 REMARK 620 6 DT C 874 OP1 95.6 172.1 96.7 85.1 79.2 REMARK 620 7 TTP C 901 O2A 87.3 167.3 84.8 92.4 92.4 13.7 REMARK 620 8 TTP C 901 O2B 172.4 83.6 91.7 3.7 74.5 88.6 95.5 REMARK 620 9 TTP C 901 O3G 104.7 95.6 173.6 80.3 9.1 84.3 96.9 82.0 REMARK 620 N 1 2 3 4 5 6 7 8 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 902 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 8 OD1 REMARK 620 2 ASP A 103 OD1 98.8 REMARK 620 3 GLU A 104 OE2 97.7 148.3 REMARK 620 4 DC C 873 O3' 132.3 94.3 94.3 REMARK 620 5 DC C 873 O3' 137.4 101.8 83.6 11.2 REMARK 620 6 DT C 874 OP1 82.9 105.3 103.5 49.4 55.8 REMARK 620 7 TTP C 901 O2A 81.2 98.9 110.3 51.4 59.0 6.9 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG F 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG F 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 F 903 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 F 904 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DPO A 903 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-nucleotide TTP C 901 and DC REMARK 800 C 873 DBREF 5YV0 F 2 351 UNP Q47155 DPO4_ECOLI 2 351 DBREF 5YV0 A 2 351 UNP Q47155 DPO4_ECOLI 2 351 DBREF 5YV0 G 837 854 PDB 5YV0 5YV0 837 854 DBREF 5YV0 H 856 874 PDB 5YV0 5YV0 856 874 DBREF 5YV0 B 837 854 PDB 5YV0 5YV0 837 854 DBREF 5YV0 C 856 874 PDB 5YV0 5YV0 856 874 SEQADV 5YV0 GLY F 0 UNP Q47155 EXPRESSION TAG SEQADV 5YV0 SER F 1 UNP Q47155 EXPRESSION TAG SEQADV 5YV0 GLY A 0 UNP Q47155 EXPRESSION TAG SEQADV 5YV0 SER A 1 UNP Q47155 EXPRESSION TAG SEQRES 1 F 352 GLY SER ARG LYS ILE ILE HIS VAL ASP MET ASP CYS PHE SEQRES 2 F 352 PHE ALA ALA VAL GLU MET ARG ASP ASN PRO ALA LEU ARG SEQRES 3 F 352 ASP ILE PRO ILE ALA ILE GLY GLY SER ARG GLU ARG ARG SEQRES 4 F 352 GLY VAL ILE SER THR ALA ASN TYR PRO ALA ARG LYS PHE SEQRES 5 F 352 GLY VAL ARG SER ALA MET PRO THR GLY MET ALA LEU LYS SEQRES 6 F 352 LEU CYS PRO HIS LEU THR LEU LEU PRO GLY ARG PHE ASP SEQRES 7 F 352 ALA TYR LYS GLU ALA SER ASN HIS ILE ARG GLU ILE PHE SEQRES 8 F 352 SER ARG TYR THR SER ARG ILE GLU PRO LEU SER LEU ASP SEQRES 9 F 352 GLU ALA TYR LEU ASP VAL THR ASP SER VAL HIS CYS HIS SEQRES 10 F 352 GLY SER ALA THR LEU ILE ALA GLN GLU ILE ARG GLN THR SEQRES 11 F 352 ILE PHE ASN GLU LEU GLN LEU THR ALA SER ALA GLY VAL SEQRES 12 F 352 ALA PRO VAL LYS PHE LEU ALA LYS ILE ALA SER ASP MET SEQRES 13 F 352 ASN LYS PRO ASN GLY GLN PHE VAL ILE THR PRO ALA GLU SEQRES 14 F 352 VAL PRO ALA PHE LEU GLN THR LEU PRO LEU ALA LYS ILE SEQRES 15 F 352 PRO GLY VAL GLY LYS VAL SER ALA ALA LYS LEU GLU ALA SEQRES 16 F 352 MET GLY LEU ARG THR CYS GLY ASP VAL GLN LYS CYS ASP SEQRES 17 F 352 LEU VAL MET LEU LEU LYS ARG PHE GLY LYS PHE GLY ARG SEQRES 18 F 352 ILE LEU TRP GLU ARG SER GLN GLY ILE ASP GLU ARG ASP SEQRES 19 F 352 VAL ASN SER GLU ARG LEU ARG LYS SER VAL GLY VAL GLU SEQRES 20 F 352 ARG THR MET ALA GLU ASP ILE HIS HIS TRP SER GLU CYS SEQRES 21 F 352 GLU ALA ILE ILE GLU ARG LEU TYR PRO GLU LEU GLU ARG SEQRES 22 F 352 ARG LEU ALA LYS VAL LYS PRO ASP LEU LEU ILE ALA ARG SEQRES 23 F 352 GLN GLY VAL LYS LEU LYS PHE ASP ASP PHE GLN GLN THR SEQRES 24 F 352 THR GLN GLU HIS VAL TRP PRO ARG LEU ASN LYS ALA ASP SEQRES 25 F 352 LEU ILE ALA THR ALA ARG LYS THR TRP ASP GLU ARG ARG SEQRES 26 F 352 GLY GLY ARG GLY VAL ARG LEU VAL GLY LEU HIS VAL THR SEQRES 27 F 352 LEU LEU ASP PRO GLN MET GLU ARG GLN LEU VAL LEU GLY SEQRES 28 F 352 LEU SEQRES 1 A 352 GLY SER ARG LYS ILE ILE HIS VAL ASP MET ASP CYS PHE SEQRES 2 A 352 PHE ALA ALA VAL GLU MET ARG ASP ASN PRO ALA LEU ARG SEQRES 3 A 352 ASP ILE PRO ILE ALA ILE GLY GLY SER ARG GLU ARG ARG SEQRES 4 A 352 GLY VAL ILE SER THR ALA ASN TYR PRO ALA ARG LYS PHE SEQRES 5 A 352 GLY VAL ARG SER ALA MET PRO THR GLY MET ALA LEU LYS SEQRES 6 A 352 LEU CYS PRO HIS LEU THR LEU LEU PRO GLY ARG PHE ASP SEQRES 7 A 352 ALA TYR LYS GLU ALA SER ASN HIS ILE ARG GLU ILE PHE SEQRES 8 A 352 SER ARG TYR THR SER ARG ILE GLU PRO LEU SER LEU ASP SEQRES 9 A 352 GLU ALA TYR LEU ASP VAL THR ASP SER VAL HIS CYS HIS SEQRES 10 A 352 GLY SER ALA THR LEU ILE ALA GLN GLU ILE ARG GLN THR SEQRES 11 A 352 ILE PHE ASN GLU LEU GLN LEU THR ALA SER ALA GLY VAL SEQRES 12 A 352 ALA PRO VAL LYS PHE LEU ALA LYS ILE ALA SER ASP MET SEQRES 13 A 352 ASN LYS PRO ASN GLY GLN PHE VAL ILE THR PRO ALA GLU SEQRES 14 A 352 VAL PRO ALA PHE LEU GLN THR LEU PRO LEU ALA LYS ILE SEQRES 15 A 352 PRO GLY VAL GLY LYS VAL SER ALA ALA LYS LEU GLU ALA SEQRES 16 A 352 MET GLY LEU ARG THR CYS GLY ASP VAL GLN LYS CYS ASP SEQRES 17 A 352 LEU VAL MET LEU LEU LYS ARG PHE GLY LYS PHE GLY ARG SEQRES 18 A 352 ILE LEU TRP GLU ARG SER GLN GLY ILE ASP GLU ARG ASP SEQRES 19 A 352 VAL ASN SER GLU ARG LEU ARG LYS SER VAL GLY VAL GLU SEQRES 20 A 352 ARG THR MET ALA GLU ASP ILE HIS HIS TRP SER GLU CYS SEQRES 21 A 352 GLU ALA ILE ILE GLU ARG LEU TYR PRO GLU LEU GLU ARG SEQRES 22 A 352 ARG LEU ALA LYS VAL LYS PRO ASP LEU LEU ILE ALA ARG SEQRES 23 A 352 GLN GLY VAL LYS LEU LYS PHE ASP ASP PHE GLN GLN THR SEQRES 24 A 352 THR GLN GLU HIS VAL TRP PRO ARG LEU ASN LYS ALA ASP SEQRES 25 A 352 LEU ILE ALA THR ALA ARG LYS THR TRP ASP GLU ARG ARG SEQRES 26 A 352 GLY GLY ARG GLY VAL ARG LEU VAL GLY LEU HIS VAL THR SEQRES 27 A 352 LEU LEU ASP PRO GLN MET GLU ARG GLN LEU VAL LEU GLY SEQRES 28 A 352 LEU SEQRES 1 G 18 DT DC DT DA DG DG DG DT DC DC DT DA DG SEQRES 2 G 18 DG DA DC DC DC SEQRES 1 H 19 DT DC DT DA DG DG DG DT DC DC DT DA DG SEQRES 2 H 19 DG DA DC DC DC DT SEQRES 1 B 18 DT DC DT DA DG DG DG DT DC DC DT DA DG SEQRES 2 B 18 DG DA DC DC DC SEQRES 1 C 19 DT DC DT DA DG DG DG DT DC DC DT DA DG SEQRES 2 C 19 DG DA DC DC DC DT HET MG F 901 1 HET MG F 902 1 HET PO4 F 903 5 HET PO4 F 904 5 HET MG A 901 1 HET MG A 902 1 HET DPO A 903 9 HET TTP C 901 29 HETNAM MG MAGNESIUM ION HETNAM PO4 PHOSPHATE ION HETNAM DPO DIPHOSPHATE HETNAM TTP THYMIDINE-5'-TRIPHOSPHATE FORMUL 7 MG 4(MG 2+) FORMUL 9 PO4 2(O4 P 3-) FORMUL 13 DPO O7 P2 4- FORMUL 14 TTP C10 H17 N2 O14 P3 FORMUL 15 HOH *375(H2 O) HELIX 1 AA1 CYS F 11 ASN F 21 1 11 HELIX 2 AA2 PRO F 22 ARG F 25 5 4 HELIX 3 AA3 ASN F 45 LYS F 50 1 6 HELIX 4 AA4 PRO F 58 CYS F 66 1 9 HELIX 5 AA5 ARG F 75 ARG F 92 1 18 HELIX 6 AA6 VAL F 113 GLY F 117 5 5 HELIX 7 AA7 SER F 118 GLN F 135 1 18 HELIX 8 AA8 VAL F 145 ASN F 156 1 12 HELIX 9 AA9 GLU F 168 THR F 175 1 8 HELIX 10 AB1 PRO F 177 ILE F 181 5 5 HELIX 11 AB2 GLY F 185 MET F 195 1 11 HELIX 12 AB3 THR F 199 LYS F 205 1 7 HELIX 13 AB4 ASP F 207 GLY F 216 1 10 HELIX 14 AB5 GLY F 216 SER F 226 1 11 HELIX 15 AB6 HIS F 255 LYS F 278 1 24 HELIX 16 AB7 ASN F 308 ARG F 324 1 17 HELIX 17 AB8 CYS A 11 ASN A 21 1 11 HELIX 18 AB9 PRO A 22 ARG A 25 5 4 HELIX 19 AC1 ASN A 45 LYS A 50 1 6 HELIX 20 AC2 PRO A 58 CYS A 66 1 9 HELIX 21 AC3 ARG A 75 THR A 94 1 20 HELIX 22 AC4 HIS A 114 GLY A 117 5 4 HELIX 23 AC5 SER A 118 GLN A 135 1 18 HELIX 24 AC6 VAL A 145 ASP A 154 1 10 HELIX 25 AC7 THR A 165 ALA A 167 5 3 HELIX 26 AC8 GLU A 168 THR A 175 1 8 HELIX 27 AC9 PRO A 177 ILE A 181 5 5 HELIX 28 AD1 GLY A 185 MET A 195 1 11 HELIX 29 AD2 THR A 199 LYS A 205 1 7 HELIX 30 AD3 ASP A 207 ARG A 214 1 8 HELIX 31 AD4 GLY A 216 SER A 226 1 11 HELIX 32 AD5 HIS A 255 LYS A 278 1 24 HELIX 33 AD6 ASN A 308 ARG A 324 1 17 SHEET 1 AA1 5 ILE F 97 SER F 101 0 SHEET 2 AA1 5 GLU F 104 ASP F 108 -1 O TYR F 106 N GLU F 98 SHEET 3 AA1 5 ILE F 4 MET F 9 -1 N ILE F 5 O LEU F 107 SHEET 4 AA1 5 ALA F 138 ALA F 143 -1 O ALA F 143 N ILE F 4 SHEET 5 AA1 5 GLN F 161 VAL F 163 1 O PHE F 162 N VAL F 142 SHEET 1 AA2 3 ILE F 41 ALA F 44 0 SHEET 2 AA2 3 ILE F 29 GLY F 32 -1 N ILE F 31 O SER F 42 SHEET 3 AA2 3 THR F 70 LEU F 72 1 O LEU F 72 N ALA F 30 SHEET 1 AA3 4 SER F 242 ILE F 253 0 SHEET 2 AA3 4 VAL F 329 THR F 337 -1 O LEU F 334 N VAL F 245 SHEET 3 AA3 4 ARG F 285 PHE F 292 -1 N ARG F 285 O THR F 337 SHEET 4 AA3 4 GLN F 297 VAL F 303 -1 O THR F 298 N LEU F 290 SHEET 1 AA4 5 ILE A 97 SER A 101 0 SHEET 2 AA4 5 GLU A 104 ASP A 108 -1 O TYR A 106 N GLU A 98 SHEET 3 AA4 5 ILE A 4 MET A 9 -1 N ILE A 5 O LEU A 107 SHEET 4 AA4 5 ALA A 138 ALA A 143 -1 O SER A 139 N ASP A 8 SHEET 5 AA4 5 GLN A 161 VAL A 163 1 O PHE A 162 N VAL A 142 SHEET 1 AA5 3 ILE A 41 ALA A 44 0 SHEET 2 AA5 3 ILE A 29 GLY A 32 -1 N ILE A 31 O SER A 42 SHEET 3 AA5 3 THR A 70 LEU A 72 1 O LEU A 72 N ALA A 30 SHEET 1 AA6 4 SER A 242 ILE A 253 0 SHEET 2 AA6 4 VAL A 329 THR A 337 -1 O LEU A 334 N VAL A 245 SHEET 3 AA6 4 ARG A 285 PHE A 292 -1 N GLY A 287 O HIS A 335 SHEET 4 AA6 4 GLN A 297 VAL A 303 -1 O THR A 298 N LEU A 290 LINK O3'A DC C 873 PA ATTP C 901 1555 1555 1.46 LINK OD1AASP F 8 MG MG F 901 1555 1555 2.23 LINK OD1BASP F 8 MG MG F 901 1555 1555 2.86 LINK OD1BASP F 8 MG MG F 902 1555 1555 2.28 LINK O MET F 9 MG MG F 901 1555 1555 2.27 LINK OD2 ASP F 103 MG MG F 901 1555 1555 2.37 LINK OD1 ASP F 103 MG MG F 902 1555 1555 2.12 LINK OE1 GLU F 104 MG MG F 902 1555 1555 2.07 LINK MG MG F 901 O1 PO4 F 903 1555 1555 2.26 LINK MG MG F 901 OP1 DT H 874 1555 1555 2.12 LINK MG MG F 902 O3' DC H 873 1555 1555 2.64 LINK MG MG F 902 OP1 DT H 874 1555 1555 2.24 LINK OD1 ASP A 8 MG MG A 901 1555 1555 2.39 LINK OD1 ASP A 8 MG MG A 902 1555 1555 2.56 LINK O MET A 9 MG MG A 901 1555 1555 2.36 LINK OD2 ASP A 103 MG MG A 901 1555 1555 2.39 LINK OD1 ASP A 103 MG MG A 902 1555 1555 2.05 LINK OE2 GLU A 104 MG MG A 902 1555 1555 2.09 LINK MG MG A 901 O2 BDPO A 903 1555 1555 2.34 LINK MG MG A 901 O5 BDPO A 903 1555 1555 2.87 LINK MG MG A 901 OP1B DT C 874 1555 1555 2.20 LINK MG MG A 901 O2AATTP C 901 1555 1555 2.05 LINK MG MG A 901 O2BATTP C 901 1555 1555 2.13 LINK MG MG A 901 O3GATTP C 901 1555 1555 2.47 LINK MG MG A 902 O3'A DC C 873 1555 1555 2.96 LINK MG MG A 902 O3'B DC C 873 1555 1555 2.74 LINK MG MG A 902 OP1B DT C 874 1555 1555 2.59 LINK MG MG A 902 O2AATTP C 901 1555 1555 2.14 CISPEP 1 LYS F 157 PRO F 158 0 3.43 CISPEP 2 LYS A 157 PRO A 158 0 -4.64 SITE 1 AC1 7 ASP F 8 MET F 9 ASP F 103 MG F 902 SITE 2 AC1 7 PO4 F 903 PO4 F 904 DT H 874 SITE 1 AC2 6 ASP F 8 ASP F 103 GLU F 104 MG F 901 SITE 2 AC2 6 DC H 873 DT H 874 SITE 1 AC3 9 MET F 9 CYS F 11 PHE F 12 THR F 43 SITE 2 AC3 9 ARG F 49 ASP F 103 MG F 901 PO4 F 904 SITE 3 AC3 9 DT H 874 SITE 1 AC4 8 ASP F 8 ASP F 10 CYS F 11 LYS F 157 SITE 2 AC4 8 MG F 901 PO4 F 903 HOH F1009 HOH F1037 SITE 1 AC5 7 ASP A 8 MET A 9 ASP A 103 MG A 902 SITE 2 AC5 7 DPO A 903 DT C 874 TTP C 901 SITE 1 AC6 7 ASP A 8 ASP A 103 GLU A 104 MG A 901 SITE 2 AC6 7 DC C 873 DT C 874 TTP C 901 SITE 1 AC7 12 MET A 9 ASP A 10 CYS A 11 PHE A 12 SITE 2 AC7 12 THR A 43 ARG A 49 ASP A 103 LYS A 157 SITE 3 AC7 12 MG A 901 HOH A1014 DT C 874 TTP C 901 SITE 1 AC8 23 ASP A 8 MET A 9 ASP A 10 CYS A 11 SITE 2 AC8 23 PHE A 12 PHE A 13 SER A 42 THR A 43 SITE 3 AC8 23 ARG A 49 ASP A 103 GLU A 104 LYS A 150 SITE 4 AC8 23 LYS A 157 MG A 901 MG A 902 DPO A 903 SITE 5 AC8 23 HOH A1014 DA B 840 DG B 841 DG B 842 SITE 6 AC8 23 DC C 872 DT C 874 HOH C1015 CRYST1 86.080 57.120 110.210 90.00 94.44 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011617 0.000000 0.000902 0.00000 SCALE2 0.000000 0.017507 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009101 0.00000