HEADER DNA BINDING PROTEIN/DNA 23-NOV-17 5YV1 TITLE DNA POLYMERASE IV - DNA TERNARY COMPLEX 13 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA POLYMERASE IV; COMPND 3 CHAIN: F, A; COMPND 4 SYNONYM: POL IV,TRANSLESION SYNTHESIS POLYMERASE IV,TSL POLYMERASE COMPND 5 IV; COMPND 6 EC: 2.7.7.7; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: DTN1; COMPND 10 CHAIN: G, B; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: DTN2; COMPND 14 CHAIN: H, C; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI K-12; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: DINB, DINP, B0231, JW0221; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI K-12; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 83333; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI K-12; SOURCE 11 ORGANISM_TAXID: 83333; SOURCE 12 MOL_ID: 3; SOURCE 13 SYNTHETIC: YES; SOURCE 14 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI K-12; SOURCE 15 ORGANISM_TAXID: 83333 KEYWDS DNA POLYMERASE, DNA BINDING PROTEIN, DNA BINDING PROTEIN-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.KOTTUR,D.T.NAIR REVDAT 2 22-NOV-23 5YV1 1 LINK REVDAT 1 05-SEP-18 5YV1 0 JRNL AUTH J.KOTTUR,D.T.NAIR JRNL TITL PYROPHOSPHATE HYDROLYSIS IS AN INTRINSIC AND CRITICAL STEP JRNL TITL 2 OF THE DNA SYNTHESIS REACTION JRNL REF NUCLEIC ACIDS RES. V. 46 5875 2018 JRNL REFN ESSN 1362-4962 JRNL PMID 29850882 JRNL DOI 10.1093/NAR/GKY402 REMARK 2 REMARK 2 RESOLUTION. 2.09 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.09 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 54.97 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.020 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 63689 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.251 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 6259 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 54.9921 - 6.4907 0.99 3880 228 0.1557 0.1636 REMARK 3 2 6.4907 - 5.1531 1.00 3903 212 0.1809 0.2255 REMARK 3 3 5.1531 - 4.5020 1.00 3935 233 0.1645 0.2414 REMARK 3 4 4.5020 - 4.0905 1.00 3899 171 0.1579 0.2178 REMARK 3 5 4.0905 - 3.7974 1.00 3945 228 0.1625 0.2505 REMARK 3 6 3.7974 - 3.5736 1.00 3865 215 0.1754 0.2130 REMARK 3 7 3.5736 - 3.3946 1.00 3981 212 0.1745 0.2237 REMARK 3 8 3.3946 - 3.2469 1.00 3930 171 0.1745 0.2285 REMARK 3 9 3.2469 - 3.1219 1.00 3951 189 0.1900 0.2744 REMARK 3 10 3.1219 - 3.0142 1.00 3922 216 0.2071 0.2753 REMARK 3 11 3.0142 - 2.9199 1.00 3983 171 0.2088 0.2706 REMARK 3 12 2.9199 - 2.8365 1.00 3908 194 0.2080 0.2600 REMARK 3 13 2.8365 - 2.7618 1.00 3914 249 0.2177 0.2831 REMARK 3 14 2.7618 - 2.6944 1.00 3888 220 0.2201 0.2715 REMARK 3 15 2.6944 - 2.6332 1.00 3915 228 0.2411 0.3264 REMARK 3 16 2.6332 - 2.5771 1.00 3932 198 0.2459 0.3182 REMARK 3 17 2.5771 - 2.5256 1.00 3916 221 0.2370 0.3136 REMARK 3 18 2.5256 - 2.4779 1.00 3916 205 0.2252 0.2798 REMARK 3 19 2.4779 - 2.4337 1.00 3915 208 0.2241 0.2710 REMARK 3 20 2.4337 - 2.3924 1.00 3877 209 0.2364 0.2842 REMARK 3 21 2.3924 - 2.3538 1.00 3948 209 0.2506 0.3341 REMARK 3 22 2.3538 - 2.3176 1.00 3920 239 0.2474 0.3116 REMARK 3 23 2.3176 - 2.2835 1.00 3846 211 0.2585 0.3460 REMARK 3 24 2.2835 - 2.2514 0.99 3964 171 0.2612 0.2921 REMARK 3 25 2.2514 - 2.2209 1.00 3966 218 0.2619 0.2931 REMARK 3 26 2.2209 - 2.1921 1.00 3831 221 0.2711 0.3291 REMARK 3 27 2.1921 - 2.1647 0.99 3901 231 0.2769 0.3267 REMARK 3 28 2.1647 - 2.1386 1.00 3920 175 0.2857 0.3352 REMARK 3 29 2.1386 - 2.1137 1.00 3866 205 0.3081 0.3985 REMARK 3 30 2.1137 - 2.0900 0.99 3998 201 0.3033 0.3072 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.280 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.470 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 7024 REMARK 3 ANGLE : 1.041 9776 REMARK 3 CHIRALITY : 0.056 1100 REMARK 3 PLANARITY : 0.006 1030 REMARK 3 DIHEDRAL : 19.994 4027 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'F' AND (RESID 0 THROUGH 10 OR RESID 76 REMARK 3 THROUGH 164 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.7168 -14.2979 -70.0755 REMARK 3 T TENSOR REMARK 3 T11: 0.1955 T22: 0.1772 REMARK 3 T33: 0.3554 T12: -0.0291 REMARK 3 T13: 0.0763 T23: -0.0045 REMARK 3 L TENSOR REMARK 3 L11: 0.3608 L22: 0.6980 REMARK 3 L33: 0.5996 L12: -0.0581 REMARK 3 L13: 0.1499 L23: -0.0181 REMARK 3 S TENSOR REMARK 3 S11: -0.1048 S12: 0.0827 S13: 0.0017 REMARK 3 S21: -0.2190 S22: 0.0317 S23: -0.5379 REMARK 3 S31: 0.0421 S32: 0.0052 S33: -0.0008 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'F' AND (RESID 11 THROUGH 75 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.6030 2.9451 -69.3652 REMARK 3 T TENSOR REMARK 3 T11: 0.2590 T22: 0.2176 REMARK 3 T33: 0.4600 T12: 0.0076 REMARK 3 T13: -0.1150 T23: 0.0270 REMARK 3 L TENSOR REMARK 3 L11: 0.3403 L22: 0.4851 REMARK 3 L33: 0.3236 L12: 0.0420 REMARK 3 L13: 0.2334 L23: -0.0737 REMARK 3 S TENSOR REMARK 3 S11: -0.1259 S12: 0.0249 S13: 0.6157 REMARK 3 S21: -0.1716 S22: -0.1026 S23: 0.2005 REMARK 3 S31: -0.1740 S32: -0.1192 S33: -0.0611 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'F' AND (RESID 165 THROUGH 229 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.3162 -14.9888 -44.4775 REMARK 3 T TENSOR REMARK 3 T11: 0.3001 T22: 0.2206 REMARK 3 T33: 0.4408 T12: 0.0423 REMARK 3 T13: -0.0860 T23: -0.0577 REMARK 3 L TENSOR REMARK 3 L11: 0.3203 L22: 0.2302 REMARK 3 L33: 0.2995 L12: -0.1739 REMARK 3 L13: 0.2051 L23: 0.0493 REMARK 3 S TENSOR REMARK 3 S11: -0.2715 S12: -0.1559 S13: 0.1623 REMARK 3 S21: 0.4365 S22: -0.0181 S23: -0.3572 REMARK 3 S31: -0.1467 S32: -0.0447 S33: -0.0036 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'F' AND (RESID 241 THROUGH 341 ) REMARK 3 ORIGIN FOR THE GROUP (A): -30.6327 -19.3500 -64.1661 REMARK 3 T TENSOR REMARK 3 T11: 0.0355 T22: 0.4800 REMARK 3 T33: 0.2464 T12: -0.0390 REMARK 3 T13: 0.0696 T23: -0.2172 REMARK 3 L TENSOR REMARK 3 L11: 1.2459 L22: 1.4938 REMARK 3 L33: 1.2714 L12: 0.6200 REMARK 3 L13: 0.0235 L23: -0.7618 REMARK 3 S TENSOR REMARK 3 S11: -0.2487 S12: -0.2089 S13: 0.5235 REMARK 3 S21: -0.3944 S22: 0.2635 S23: 0.3227 REMARK 3 S31: 0.4258 S32: -0.6432 S33: 0.1610 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 0 THROUGH 10 OR RESID 76 REMARK 3 THROUGH 164 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.9319 -8.5898 3.3418 REMARK 3 T TENSOR REMARK 3 T11: 0.5945 T22: 0.4024 REMARK 3 T33: 0.3494 T12: 0.0404 REMARK 3 T13: -0.1014 T23: 0.0101 REMARK 3 L TENSOR REMARK 3 L11: 0.2352 L22: 0.2209 REMARK 3 L33: 0.3497 L12: 0.0918 REMARK 3 L13: 0.1455 L23: -0.0541 REMARK 3 S TENSOR REMARK 3 S11: 0.0852 S12: 0.0153 S13: -0.1373 REMARK 3 S21: 0.2657 S22: -0.0066 S23: -0.3394 REMARK 3 S31: 0.2078 S32: 0.3232 S33: -0.0001 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 11 THROUGH 75 ) REMARK 3 ORIGIN FOR THE GROUP (A): -25.5652 8.3191 -14.5509 REMARK 3 T TENSOR REMARK 3 T11: 0.6800 T22: 0.4582 REMARK 3 T33: 0.3996 T12: -0.0530 REMARK 3 T13: -0.0023 T23: -0.0144 REMARK 3 L TENSOR REMARK 3 L11: 0.1373 L22: 0.1731 REMARK 3 L33: 0.1873 L12: 0.1246 REMARK 3 L13: -0.1503 L23: -0.0634 REMARK 3 S TENSOR REMARK 3 S11: 0.1796 S12: 0.1963 S13: 0.0082 REMARK 3 S21: 0.0230 S22: -0.0393 S23: -0.2559 REMARK 3 S31: -0.4875 S32: 0.4865 S33: 0.0001 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 165 THROUGH 229 ) REMARK 3 ORIGIN FOR THE GROUP (A): -52.6146 -9.2272 -4.5787 REMARK 3 T TENSOR REMARK 3 T11: 0.6194 T22: 0.3965 REMARK 3 T33: 0.2930 T12: -0.0220 REMARK 3 T13: 0.0172 T23: 0.0200 REMARK 3 L TENSOR REMARK 3 L11: 0.2003 L22: 0.1843 REMARK 3 L33: 0.0319 L12: -0.0089 REMARK 3 L13: 0.0389 L23: -0.0495 REMARK 3 S TENSOR REMARK 3 S11: 0.0860 S12: -0.1035 S13: 0.0565 REMARK 3 S21: -0.0971 S22: -0.0174 S23: 0.3376 REMARK 3 S31: 0.0451 S32: -0.2315 S33: -0.0002 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 241 THROUGH 341 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.6610 -15.2527 -32.3870 REMARK 3 T TENSOR REMARK 3 T11: 0.4663 T22: 0.4440 REMARK 3 T33: 0.2987 T12: 0.1520 REMARK 3 T13: 0.0324 T23: -0.0043 REMARK 3 L TENSOR REMARK 3 L11: 0.4005 L22: 0.4898 REMARK 3 L33: 0.7768 L12: 0.0543 REMARK 3 L13: -0.1419 L23: 0.5754 REMARK 3 S TENSOR REMARK 3 S11: -0.0874 S12: 0.1433 S13: -0.2129 REMARK 3 S21: 0.1377 S22: -0.1173 S23: -0.1190 REMARK 3 S31: 0.1712 S32: 0.2123 S33: 0.0002 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 860 THROUGH 874 ) OR CHAIN 'G' REMARK 3 AND (RESID 838 THROUGH 854) OR CHAIN 'F' AND (RESID REMARK 3 901 THROUGH 904) REMARK 3 ORIGIN FOR THE GROUP (A): -18.4324 -24.4814 -52.9416 REMARK 3 T TENSOR REMARK 3 T11: 0.0833 T22: 0.2566 REMARK 3 T33: 0.2337 T12: -0.0047 REMARK 3 T13: 0.0694 T23: -0.0190 REMARK 3 L TENSOR REMARK 3 L11: 1.4620 L22: 0.6002 REMARK 3 L33: 0.4581 L12: -0.0908 REMARK 3 L13: 0.6968 L23: 0.1863 REMARK 3 S TENSOR REMARK 3 S11: -0.0319 S12: -0.2878 S13: -0.1907 REMARK 3 S21: -0.1222 S22: -0.1236 S23: -0.0818 REMARK 3 S31: 0.0339 S32: -0.1510 S33: -0.0402 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 838 THROUGH 854 ) OR CHAIN 'C' REMARK 3 AND (RESID 857 THROUGH 874) OR CHAIN 'A' AND (RESID REMARK 3 901 THROUGH 903) REMARK 3 ORIGIN FOR THE GROUP (A): -42.5675 -21.0019 -23.9971 REMARK 3 T TENSOR REMARK 3 T11: 0.5613 T22: 0.4441 REMARK 3 T33: 0.2840 T12: -0.0168 REMARK 3 T13: 0.0090 T23: -0.0513 REMARK 3 L TENSOR REMARK 3 L11: 0.2304 L22: 0.3084 REMARK 3 L33: 0.1460 L12: -0.1488 REMARK 3 L13: 0.1696 L23: -0.0625 REMARK 3 S TENSOR REMARK 3 S11: 0.1299 S12: -0.0236 S13: -0.0267 REMARK 3 S21: -0.0305 S22: -0.1793 S23: -0.0470 REMARK 3 S31: -0.0275 S32: -0.1347 S33: -0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: SF FILE CONTAINS FRIEDEL PAIRS UNDER REMARK 3 I/F_MINUS AND I/F_PLUS COLUMNS. REMARK 4 REMARK 4 5YV1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 29-NOV-17. REMARK 100 THE DEPOSITION ID IS D_1300005355. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-SEP-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95372 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 130 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 63709 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.090 REMARK 200 RESOLUTION RANGE LOW (A) : 65.160 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 4.400 REMARK 200 R MERGE (I) : 0.06900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.09 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.20 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.40 REMARK 200 R MERGE FOR SHELL (I) : 0.57800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4IR1 REMARK 200 REMARK 200 REMARK: THE ENTRY CONTAINS FRIEDEL PAIRS IN I/F_PLUS/MINUS REMARK 200 COLUMNS. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.67 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.66 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% MPD, PH 5.2, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 28.55000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5230 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20490 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -79.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: F, G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5230 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21140 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -61.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN F 342 REMARK 465 MET F 343 REMARK 465 GLU F 344 REMARK 465 ARG F 345 REMARK 465 GLN F 346 REMARK 465 LEU F 347 REMARK 465 VAL F 348 REMARK 465 LEU F 349 REMARK 465 GLY F 350 REMARK 465 LEU F 351 REMARK 465 GLN A 342 REMARK 465 MET A 343 REMARK 465 GLU A 344 REMARK 465 ARG A 345 REMARK 465 GLN A 346 REMARK 465 LEU A 347 REMARK 465 VAL A 348 REMARK 465 LEU A 349 REMARK 465 GLY A 350 REMARK 465 LEU A 351 REMARK 465 DT G 837 REMARK 465 DT H 856 REMARK 465 DC H 857 REMARK 465 DT H 858 REMARK 465 DA H 859 REMARK 465 DT B 837 REMARK 465 DT C 856 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS F 64 CG CD CE NZ REMARK 470 LYS F 205 CG CD CE NZ REMARK 470 LYS A 64 CG CD CE NZ REMARK 470 LYS A 205 CG CD CE NZ REMARK 470 DG H 860 P OP1 OP2 REMARK 470 DC C 857 P OP1 OP2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OP1 DT H 863 O HOH H 901 1.98 REMARK 500 O4 DT B 847 O HOH B 901 2.12 REMARK 500 O HOH F 1095 O HOH F 1158 2.18 REMARK 500 OP2 DT C 863 O HOH C 901 2.19 REMARK 500 O HOH F 1019 O HOH F 1193 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DT G 839 O3' DT G 839 C3' -0.043 REMARK 500 DG H 869 O3' DG H 869 C3' -0.038 REMARK 500 DA C 867 O3' DA C 867 C3' -0.042 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO F 341 C - N - CA ANGL. DEV. = -9.9 DEGREES REMARK 500 DG G 842 O4' - C1' - N9 ANGL. DEV. = 2.2 DEGREES REMARK 500 DA G 848 O4' - C1' - N9 ANGL. DEV. = 2.1 DEGREES REMARK 500 DC G 853 O4' - C1' - N1 ANGL. DEV. = 2.9 DEGREES REMARK 500 DG H 869 O4' - C1' - N9 ANGL. DEV. = 2.1 DEGREES REMARK 500 DC H 872 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES REMARK 500 DT H 874 O4' - C1' - N1 ANGL. DEV. = 2.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER F 101 -178.24 -175.69 REMARK 500 ASP F 111 37.04 -97.95 REMARK 500 GLU F 133 -42.91 67.32 REMARK 500 TRP F 304 138.75 -170.80 REMARK 500 ARG F 323 30.12 -147.95 REMARK 500 CYS A 11 56.12 39.77 REMARK 500 GLU A 133 -50.02 70.25 REMARK 500 ASP A 230 91.17 -164.94 REMARK 500 ASP A 340 -70.37 -65.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH F1216 DISTANCE = 6.21 ANGSTROMS REMARK 525 HOH F1217 DISTANCE = 6.44 ANGSTROMS REMARK 525 HOH F1218 DISTANCE = 6.49 ANGSTROMS REMARK 525 HOH F1219 DISTANCE = 6.97 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG F 901 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP F 8 OD1 REMARK 620 2 ASP F 8 OD1 20.6 REMARK 620 3 MET F 9 O 77.0 91.5 REMARK 620 4 ASP F 103 OD2 87.1 73.2 86.7 REMARK 620 5 PO4 F 903 O1 167.2 168.2 90.6 95.4 REMARK 620 6 PO4 F 904 O2 97.2 111.0 94.3 175.7 80.4 REMARK 620 7 DT H 874 OP1 98.8 83.5 174.3 89.2 93.8 90.0 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG F 902 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP F 8 OD1 REMARK 620 2 ASP F 103 OD1 98.6 REMARK 620 3 ASP F 103 OD2 69.9 48.3 REMARK 620 4 GLU F 104 OE1 105.0 117.7 161.5 REMARK 620 5 DC H 873 O3' 152.6 98.3 106.9 85.8 REMARK 620 6 DT H 874 OP1 92.6 108.8 72.2 126.3 61.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 901 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 8 OD1 REMARK 620 2 MET A 9 O 87.0 REMARK 620 3 ASP A 103 OD2 83.4 86.1 REMARK 620 4 DPO A 903 O2 177.4 90.5 97.1 REMARK 620 5 DPO A 903 O7 105.3 95.3 171.2 74.3 REMARK 620 6 HOH A1001 O 66.7 64.0 137.6 111.6 49.6 REMARK 620 7 DT C 874 OP1 96.7 175.5 96.9 85.8 81.3 115.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 902 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 8 OD1 REMARK 620 2 ASP A 103 OD1 103.4 REMARK 620 3 ASP A 103 OD2 66.9 47.7 REMARK 620 4 GLU A 104 OE2 113.9 119.4 163.9 REMARK 620 5 DC C 873 O3' 139.5 98.2 106.8 83.1 REMARK 620 6 DT C 874 OP1 81.6 107.9 73.1 122.9 59.2 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG F 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG F 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 F 903 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 F 904 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DPO A 903 DBREF 5YV1 F 2 351 UNP Q47155 DPO4_ECOLI 2 351 DBREF 5YV1 A 2 351 UNP Q47155 DPO4_ECOLI 2 351 DBREF 5YV1 G 837 854 PDB 5YV1 5YV1 837 854 DBREF 5YV1 H 856 874 PDB 5YV1 5YV1 856 874 DBREF 5YV1 B 837 854 PDB 5YV1 5YV1 837 854 DBREF 5YV1 C 856 874 PDB 5YV1 5YV1 856 874 SEQADV 5YV1 GLY F 0 UNP Q47155 EXPRESSION TAG SEQADV 5YV1 SER F 1 UNP Q47155 EXPRESSION TAG SEQADV 5YV1 GLY A 0 UNP Q47155 EXPRESSION TAG SEQADV 5YV1 SER A 1 UNP Q47155 EXPRESSION TAG SEQRES 1 F 352 GLY SER ARG LYS ILE ILE HIS VAL ASP MET ASP CYS PHE SEQRES 2 F 352 PHE ALA ALA VAL GLU MET ARG ASP ASN PRO ALA LEU ARG SEQRES 3 F 352 ASP ILE PRO ILE ALA ILE GLY GLY SER ARG GLU ARG ARG SEQRES 4 F 352 GLY VAL ILE SER THR ALA ASN TYR PRO ALA ARG LYS PHE SEQRES 5 F 352 GLY VAL ARG SER ALA MET PRO THR GLY MET ALA LEU LYS SEQRES 6 F 352 LEU CYS PRO HIS LEU THR LEU LEU PRO GLY ARG PHE ASP SEQRES 7 F 352 ALA TYR LYS GLU ALA SER ASN HIS ILE ARG GLU ILE PHE SEQRES 8 F 352 SER ARG TYR THR SER ARG ILE GLU PRO LEU SER LEU ASP SEQRES 9 F 352 GLU ALA TYR LEU ASP VAL THR ASP SER VAL HIS CYS HIS SEQRES 10 F 352 GLY SER ALA THR LEU ILE ALA GLN GLU ILE ARG GLN THR SEQRES 11 F 352 ILE PHE ASN GLU LEU GLN LEU THR ALA SER ALA GLY VAL SEQRES 12 F 352 ALA PRO VAL LYS PHE LEU ALA LYS ILE ALA SER ASP MET SEQRES 13 F 352 ASN LYS PRO ASN GLY GLN PHE VAL ILE THR PRO ALA GLU SEQRES 14 F 352 VAL PRO ALA PHE LEU GLN THR LEU PRO LEU ALA LYS ILE SEQRES 15 F 352 PRO GLY VAL GLY LYS VAL SER ALA ALA LYS LEU GLU ALA SEQRES 16 F 352 MET GLY LEU ARG THR CYS GLY ASP VAL GLN LYS CYS ASP SEQRES 17 F 352 LEU VAL MET LEU LEU LYS ARG PHE GLY LYS PHE GLY ARG SEQRES 18 F 352 ILE LEU TRP GLU ARG SER GLN GLY ILE ASP GLU ARG ASP SEQRES 19 F 352 VAL ASN SER GLU ARG LEU ARG LYS SER VAL GLY VAL GLU SEQRES 20 F 352 ARG THR MET ALA GLU ASP ILE HIS HIS TRP SER GLU CYS SEQRES 21 F 352 GLU ALA ILE ILE GLU ARG LEU TYR PRO GLU LEU GLU ARG SEQRES 22 F 352 ARG LEU ALA LYS VAL LYS PRO ASP LEU LEU ILE ALA ARG SEQRES 23 F 352 GLN GLY VAL LYS LEU LYS PHE ASP ASP PHE GLN GLN THR SEQRES 24 F 352 THR GLN GLU HIS VAL TRP PRO ARG LEU ASN LYS ALA ASP SEQRES 25 F 352 LEU ILE ALA THR ALA ARG LYS THR TRP ASP GLU ARG ARG SEQRES 26 F 352 GLY GLY ARG GLY VAL ARG LEU VAL GLY LEU HIS VAL THR SEQRES 27 F 352 LEU LEU ASP PRO GLN MET GLU ARG GLN LEU VAL LEU GLY SEQRES 28 F 352 LEU SEQRES 1 A 352 GLY SER ARG LYS ILE ILE HIS VAL ASP MET ASP CYS PHE SEQRES 2 A 352 PHE ALA ALA VAL GLU MET ARG ASP ASN PRO ALA LEU ARG SEQRES 3 A 352 ASP ILE PRO ILE ALA ILE GLY GLY SER ARG GLU ARG ARG SEQRES 4 A 352 GLY VAL ILE SER THR ALA ASN TYR PRO ALA ARG LYS PHE SEQRES 5 A 352 GLY VAL ARG SER ALA MET PRO THR GLY MET ALA LEU LYS SEQRES 6 A 352 LEU CYS PRO HIS LEU THR LEU LEU PRO GLY ARG PHE ASP SEQRES 7 A 352 ALA TYR LYS GLU ALA SER ASN HIS ILE ARG GLU ILE PHE SEQRES 8 A 352 SER ARG TYR THR SER ARG ILE GLU PRO LEU SER LEU ASP SEQRES 9 A 352 GLU ALA TYR LEU ASP VAL THR ASP SER VAL HIS CYS HIS SEQRES 10 A 352 GLY SER ALA THR LEU ILE ALA GLN GLU ILE ARG GLN THR SEQRES 11 A 352 ILE PHE ASN GLU LEU GLN LEU THR ALA SER ALA GLY VAL SEQRES 12 A 352 ALA PRO VAL LYS PHE LEU ALA LYS ILE ALA SER ASP MET SEQRES 13 A 352 ASN LYS PRO ASN GLY GLN PHE VAL ILE THR PRO ALA GLU SEQRES 14 A 352 VAL PRO ALA PHE LEU GLN THR LEU PRO LEU ALA LYS ILE SEQRES 15 A 352 PRO GLY VAL GLY LYS VAL SER ALA ALA LYS LEU GLU ALA SEQRES 16 A 352 MET GLY LEU ARG THR CYS GLY ASP VAL GLN LYS CYS ASP SEQRES 17 A 352 LEU VAL MET LEU LEU LYS ARG PHE GLY LYS PHE GLY ARG SEQRES 18 A 352 ILE LEU TRP GLU ARG SER GLN GLY ILE ASP GLU ARG ASP SEQRES 19 A 352 VAL ASN SER GLU ARG LEU ARG LYS SER VAL GLY VAL GLU SEQRES 20 A 352 ARG THR MET ALA GLU ASP ILE HIS HIS TRP SER GLU CYS SEQRES 21 A 352 GLU ALA ILE ILE GLU ARG LEU TYR PRO GLU LEU GLU ARG SEQRES 22 A 352 ARG LEU ALA LYS VAL LYS PRO ASP LEU LEU ILE ALA ARG SEQRES 23 A 352 GLN GLY VAL LYS LEU LYS PHE ASP ASP PHE GLN GLN THR SEQRES 24 A 352 THR GLN GLU HIS VAL TRP PRO ARG LEU ASN LYS ALA ASP SEQRES 25 A 352 LEU ILE ALA THR ALA ARG LYS THR TRP ASP GLU ARG ARG SEQRES 26 A 352 GLY GLY ARG GLY VAL ARG LEU VAL GLY LEU HIS VAL THR SEQRES 27 A 352 LEU LEU ASP PRO GLN MET GLU ARG GLN LEU VAL LEU GLY SEQRES 28 A 352 LEU SEQRES 1 G 18 DT DC DT DA DG DG DG DT DC DC DT DA DG SEQRES 2 G 18 DG DA DC DC DC SEQRES 1 H 19 DT DC DT DA DG DG DG DT DC DC DT DA DG SEQRES 2 H 19 DG DA DC DC DC DT SEQRES 1 B 18 DT DC DT DA DG DG DG DT DC DC DT DA DG SEQRES 2 B 18 DG DA DC DC DC SEQRES 1 C 19 DT DC DT DA DG DG DG DT DC DC DT DA DG SEQRES 2 C 19 DG DA DC DC DC DT HET MG F 901 1 HET MG F 902 1 HET PO4 F 903 5 HET PO4 F 904 5 HET MG A 901 1 HET MG A 902 1 HET DPO A 903 9 HETNAM MG MAGNESIUM ION HETNAM PO4 PHOSPHATE ION HETNAM DPO DIPHOSPHATE FORMUL 7 MG 4(MG 2+) FORMUL 9 PO4 2(O4 P 3-) FORMUL 13 DPO O7 P2 4- FORMUL 14 HOH *485(H2 O) HELIX 1 AA1 CYS F 11 ASN F 21 1 11 HELIX 2 AA2 PRO F 22 ARG F 25 5 4 HELIX 3 AA3 ASN F 45 PHE F 51 1 7 HELIX 4 AA4 PRO F 58 CYS F 66 1 9 HELIX 5 AA5 ARG F 75 ARG F 92 1 18 HELIX 6 AA6 VAL F 113 GLY F 117 5 5 HELIX 7 AA7 SER F 118 GLN F 135 1 18 HELIX 8 AA8 VAL F 145 ASN F 156 1 12 HELIX 9 AA9 GLU F 168 THR F 175 1 8 HELIX 10 AB1 PRO F 177 ILE F 181 5 5 HELIX 11 AB2 GLY F 185 MET F 195 1 11 HELIX 12 AB3 THR F 199 LYS F 205 1 7 HELIX 13 AB4 ASP F 207 GLY F 216 1 10 HELIX 14 AB5 GLY F 216 SER F 226 1 11 HELIX 15 AB6 HIS F 255 LYS F 278 1 24 HELIX 16 AB7 ASN F 308 ARG F 324 1 17 HELIX 17 AB8 CYS A 11 ASN A 21 1 11 HELIX 18 AB9 PRO A 22 ARG A 25 5 4 HELIX 19 AC1 ASN A 45 LYS A 50 1 6 HELIX 20 AC2 PRO A 58 CYS A 66 1 9 HELIX 21 AC3 ARG A 75 THR A 94 1 20 HELIX 22 AC4 HIS A 114 GLY A 117 5 4 HELIX 23 AC5 SER A 118 GLN A 135 1 18 HELIX 24 AC6 VAL A 145 ASN A 156 1 12 HELIX 25 AC7 THR A 165 ALA A 167 5 3 HELIX 26 AC8 GLU A 168 THR A 175 1 8 HELIX 27 AC9 PRO A 177 ILE A 181 5 5 HELIX 28 AD1 GLY A 185 ALA A 194 1 10 HELIX 29 AD2 THR A 199 LYS A 205 1 7 HELIX 30 AD3 ASP A 207 GLY A 216 1 10 HELIX 31 AD4 GLY A 216 SER A 226 1 11 HELIX 32 AD5 HIS A 255 LYS A 278 1 24 HELIX 33 AD6 ASN A 308 ARG A 324 1 17 SHEET 1 AA1 5 ILE F 97 SER F 101 0 SHEET 2 AA1 5 GLU F 104 ASP F 108 -1 O TYR F 106 N GLU F 98 SHEET 3 AA1 5 ILE F 4 MET F 9 -1 N ILE F 5 O LEU F 107 SHEET 4 AA1 5 ALA F 138 ALA F 143 -1 O ALA F 143 N ILE F 4 SHEET 5 AA1 5 GLN F 161 VAL F 163 1 O PHE F 162 N VAL F 142 SHEET 1 AA2 3 ILE F 41 ALA F 44 0 SHEET 2 AA2 3 ILE F 29 GLY F 32 -1 N ILE F 31 O SER F 42 SHEET 3 AA2 3 THR F 70 LEU F 72 1 O LEU F 72 N ALA F 30 SHEET 1 AA3 4 SER F 242 ILE F 253 0 SHEET 2 AA3 4 VAL F 329 THR F 337 -1 O LEU F 334 N VAL F 245 SHEET 3 AA3 4 ARG F 285 PHE F 292 -1 N LYS F 289 O GLY F 333 SHEET 4 AA3 4 GLN F 297 VAL F 303 -1 O GLN F 300 N VAL F 288 SHEET 1 AA4 5 ILE A 97 SER A 101 0 SHEET 2 AA4 5 GLU A 104 ASP A 108 -1 O TYR A 106 N GLU A 98 SHEET 3 AA4 5 ILE A 4 MET A 9 -1 N ILE A 5 O LEU A 107 SHEET 4 AA4 5 ALA A 138 ALA A 143 -1 O SER A 139 N ASP A 8 SHEET 5 AA4 5 GLN A 161 VAL A 163 1 O PHE A 162 N VAL A 142 SHEET 1 AA5 3 ILE A 41 ALA A 44 0 SHEET 2 AA5 3 ILE A 29 GLY A 32 -1 N ILE A 31 O SER A 42 SHEET 3 AA5 3 THR A 70 LEU A 72 1 O LEU A 72 N ALA A 30 SHEET 1 AA6 4 SER A 242 ILE A 253 0 SHEET 2 AA6 4 VAL A 329 THR A 337 -1 O LEU A 334 N VAL A 245 SHEET 3 AA6 4 ARG A 285 PHE A 292 -1 N LYS A 291 O ARG A 330 SHEET 4 AA6 4 GLN A 297 VAL A 303 -1 O THR A 298 N LEU A 290 LINK OD1AASP F 8 MG MG F 901 1555 1555 2.27 LINK OD1BASP F 8 MG MG F 901 1555 1555 2.81 LINK OD1BASP F 8 MG MG F 902 1555 1555 2.34 LINK O MET F 9 MG MG F 901 1555 1555 2.25 LINK OD2 ASP F 103 MG MG F 901 1555 1555 2.28 LINK OD1 ASP F 103 MG MG F 902 1555 1555 2.01 LINK OD2 ASP F 103 MG MG F 902 1555 1555 2.93 LINK OE1 GLU F 104 MG MG F 902 1555 1555 2.05 LINK MG MG F 901 O1 PO4 F 903 1555 1555 2.39 LINK MG MG F 901 O2 PO4 F 904 1555 1555 2.88 LINK MG MG F 901 OP1 DT H 874 1555 1555 2.15 LINK MG MG F 902 O3' DC H 873 1555 1555 2.66 LINK MG MG F 902 OP1 DT H 874 1555 1555 2.28 LINK OD1 ASP A 8 MG MG A 901 1555 1555 2.31 LINK OD1 ASP A 8 MG MG A 902 1555 1555 2.54 LINK O MET A 9 MG MG A 901 1555 1555 2.33 LINK OD2 ASP A 103 MG MG A 901 1555 1555 2.28 LINK OD1 ASP A 103 MG MG A 902 1555 1555 2.03 LINK OD2 ASP A 103 MG MG A 902 1555 1555 2.95 LINK OE2 GLU A 104 MG MG A 902 1555 1555 1.95 LINK MG MG A 901 O2 DPO A 903 1555 1555 2.27 LINK MG MG A 901 O7 DPO A 903 1555 1555 2.89 LINK MG MG A 901 O HOH A1001 1555 1555 1.84 LINK MG MG A 901 OP1 DT C 874 1555 1555 2.03 LINK MG MG A 902 O3' DC C 873 1555 1555 2.70 LINK MG MG A 902 OP1 DT C 874 1555 1555 2.42 CISPEP 1 LYS F 157 PRO F 158 0 1.83 CISPEP 2 LYS A 157 PRO A 158 0 -6.00 SITE 1 AC1 7 ASP F 8 MET F 9 ASP F 103 MG F 902 SITE 2 AC1 7 PO4 F 903 PO4 F 904 DT H 874 SITE 1 AC2 7 ASP F 8 ASP F 103 GLU F 104 MG F 901 SITE 2 AC2 7 HOH F1022 DC H 873 DT H 874 SITE 1 AC3 10 MET F 9 CYS F 11 PHE F 12 THR F 43 SITE 2 AC3 10 ARG F 49 ASP F 103 MG F 901 PO4 F 904 SITE 3 AC3 10 HOH F1008 DT H 874 SITE 1 AC4 12 MET F 9 ASP F 10 CYS F 11 ARG F 49 SITE 2 AC4 12 LYS F 157 MG F 901 PO4 F 903 HOH F1004 SITE 3 AC4 12 HOH F1008 HOH F1014 HOH F1032 DT H 874 SITE 1 AC5 7 ASP A 8 MET A 9 ASP A 103 MG A 902 SITE 2 AC5 7 DPO A 903 HOH A1001 DT C 874 SITE 1 AC6 6 ASP A 8 ASP A 103 GLU A 104 MG A 901 SITE 2 AC6 6 DC C 873 DT C 874 SITE 1 AC7 11 MET A 9 ASP A 10 CYS A 11 PHE A 12 SITE 2 AC7 11 THR A 43 ARG A 49 ASP A 103 LYS A 157 SITE 3 AC7 11 MG A 901 HOH A1001 DT C 874 CRYST1 86.070 57.100 110.300 90.00 94.59 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011618 0.000000 0.000933 0.00000 SCALE2 0.000000 0.017513 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009095 0.00000