HEADER TRANSPORT PROTEIN 25-NOV-17 5YVE TITLE CRYSTAL STRUCTURE OF HUMAN P2X3 RECEPTOR IN COMPLEX WITH THE AF-219 TITLE 2 NEGATIVE ALLOSTERIC MODULATOR CAVEAT 5YVE FOLLOWING LIGANDS ARE WITH 0 OCCUPANCY: MG A 401, NA A 402, CAVEAT 2 5YVE NAG A 403, NAG A 404. COMPND MOL_ID: 1; COMPND 2 MOLECULE: P2X PURINOCEPTOR 3; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: P2X3,ATP RECEPTOR,PURINERGIC RECEPTOR; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: P2RX3; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS ION CHANNELS, ATP, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Y.WANG,M.HATTORI REVDAT 3 29-JUL-20 5YVE 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE REVDAT 2 23-MAY-18 5YVE 1 JRNL REVDAT 1 04-APR-18 5YVE 0 JRNL AUTH J.WANG,Y.WANG,W.W.CUI,Y.HUANG,Y.YANG,Y.LIU,W.S.ZHAO, JRNL AUTH 2 X.Y.CHENG,W.S.SUN,P.CAO,M.X.ZHU,R.WANG,M.HATTORI,Y.YU JRNL TITL DRUGGABLE NEGATIVE ALLOSTERIC SITE OF P2X3 RECEPTORS. JRNL REF PROC. NATL. ACAD. SCI. V. 115 4939 2018 JRNL REF 2 U.S.A. JRNL REFN ESSN 1091-6490 JRNL PMID 29674445 JRNL DOI 10.1073/PNAS.1800907115 REMARK 2 REMARK 2 RESOLUTION. 3.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.59 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 17203 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.241 REMARK 3 R VALUE (WORKING SET) : 0.235 REMARK 3 FREE R VALUE : 0.296 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.990 REMARK 3 FREE R VALUE TEST SET COUNT : 1719 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.5917 - 7.7740 0.99 1297 144 0.2438 0.3538 REMARK 3 2 7.7740 - 6.1747 0.99 1283 146 0.2600 0.2955 REMARK 3 3 6.1747 - 5.3954 0.99 1295 141 0.2136 0.2490 REMARK 3 4 5.3954 - 4.9027 0.99 1295 144 0.1848 0.2706 REMARK 3 5 4.9027 - 4.5516 0.99 1281 140 0.1841 0.2323 REMARK 3 6 4.5516 - 4.2834 1.00 1299 146 0.1976 0.2232 REMARK 3 7 4.2834 - 4.0690 0.99 1275 142 0.2185 0.2589 REMARK 3 8 4.0690 - 3.8919 0.99 1281 140 0.2531 0.3182 REMARK 3 9 3.8919 - 3.7422 1.00 1303 141 0.2792 0.3314 REMARK 3 10 3.7422 - 3.6131 1.00 1289 145 0.3129 0.3146 REMARK 3 11 3.6131 - 3.5002 1.00 1298 145 0.3186 0.3171 REMARK 3 12 3.5002 - 3.4001 0.98 1288 145 0.3141 0.2896 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.360 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.070 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 2597 REMARK 3 ANGLE : 0.903 3544 REMARK 3 CHIRALITY : 0.048 407 REMARK 3 PLANARITY : 0.004 449 REMARK 3 DIHEDRAL : 17.556 1523 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURE FACTOR FILE CONTAINS REMARK 3 FRIEDEL PAIRS IN I_PLUS/MINUS COLUMNS REMARK 4 REMARK 4 5YVE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 05-DEC-17. REMARK 100 THE DEPOSITION ID IS D_1300005974. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-JUL-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17203 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 4.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.4500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.60 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.97 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.05M MGCL2, 0.1M GLYCINE PH 9.0, 22 REMARK 280 -24% PEG 400, VAPOR DIFFUSION, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 59.80650 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 34.52930 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 78.56367 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 59.80650 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 34.52930 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 78.56367 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 59.80650 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 34.52930 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 78.56367 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 59.80650 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 34.52930 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 78.56367 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 59.80650 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 34.52930 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 78.56367 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 59.80650 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 34.52930 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 78.56367 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 69.05860 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 157.12733 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 69.05860 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 157.12733 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 69.05860 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 157.12733 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 69.05860 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 157.12733 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 69.05860 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 157.12733 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 69.05860 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 157.12733 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 15010 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 43470 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -164.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 2 REMARK 465 ARG A 3 REMARK 465 GLU A 4 REMARK 465 PHE A 5 REMARK 465 ASP A 6 REMARK 465 PHE A 7 REMARK 465 PHE A 8 REMARK 465 THR A 9 REMARK 465 TYR A 10 REMARK 465 GLU A 11 REMARK 465 THR A 12 REMARK 465 PRO A 13 REMARK 465 LYS A 14 REMARK 465 VAL A 15 REMARK 465 ILE A 16 REMARK 465 VAL A 17 REMARK 465 VAL A 18 REMARK 465 LYS A 19 REMARK 465 SER A 20 REMARK 465 LYS A 348 REMARK 465 GLY A 349 REMARK 465 ALA A 350 REMARK 465 ASP A 351 REMARK 465 GLN A 352 REMARK 465 TYR A 353 REMARK 465 LYS A 354 REMARK 465 ALA A 355 REMARK 465 LYS A 356 REMARK 465 LYS A 357 REMARK 465 PHE A 358 REMARK 465 GLU A 359 REMARK 465 GLU A 360 REMARK 465 VAL A 361 REMARK 465 ASN A 362 REMARK 465 GLU A 363 REMARK 465 THR A 364 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TRP A 21 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 21 CZ3 CH2 REMARK 470 ILE A 23 CG1 CG2 CD1 REMARK 470 LYS A 47 CG CD CE NZ REMARK 470 LYS A 65 CE NZ REMARK 470 ASN A 72 CG OD1 ND2 REMARK 470 LYS A 113 CG CD CE NZ REMARK 470 GLU A 125 CG CD OE1 OE2 REMARK 470 VAL A 143 CG1 CG2 REMARK 470 GLU A 161 CG CD OE1 OE2 REMARK 470 ARG A 198 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 199 CG OD1 OD2 REMARK 470 THR A 202 OG1 CG2 REMARK 470 LYS A 209 CG CD CE NZ REMARK 470 LYS A 223 CG CD CE NZ REMARK 470 LYS A 231 CG CD CE NZ REMARK 470 LYS A 259 CG CD CE NZ REMARK 470 SER A 269 OG REMARK 470 GLU A 270 CG CD OE1 OE2 REMARK 470 LYS A 271 CG CD CE NZ REMARK 470 SER A 272 OG REMARK 470 SER A 275 OG REMARK 470 GLU A 289 CG CD OE1 OE2 REMARK 470 LEU A 343 CG CD1 CD2 REMARK 470 LEU A 344 CG CD1 CD2 REMARK 470 PHE A 346 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LEU A 347 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS A 188 O CYS A 256 2.11 REMARK 500 OE1 GLN A 227 NH1 ARG A 264 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 55 71.87 -105.19 REMARK 500 ALA A 71 -124.57 54.05 REMARK 500 ASP A 158 43.71 -93.09 REMARK 500 MET A 165 99.24 -67.11 REMARK 500 ASP A 210 84.40 -162.08 REMARK 500 ASP A 266 41.84 -76.98 REMARK 500 SER A 272 -124.83 65.36 REMARK 500 SER A 273 -3.34 81.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 615 REMARK 615 ZERO OCCUPANCY ATOM REMARK 615 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 615 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 615 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 615 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 615 M RES C SSEQI REMARK 615 MG A 401 REMARK 615 NA A 402 REMARK 615 NAG A 403 REMARK 615 NAG A 404 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 111 OE1 REMARK 620 2 GLU A 111 OE2 55.4 REMARK 620 3 ASP A 158 OD2 104.3 90.2 REMARK 620 N 1 2 DBREF 5YVE A 6 364 UNP P56373 P2RX3_HUMAN 6 364 SEQADV 5YVE SER A 2 UNP P56373 EXPRESSION TAG SEQADV 5YVE ARG A 3 UNP P56373 EXPRESSION TAG SEQADV 5YVE GLU A 4 UNP P56373 EXPRESSION TAG SEQADV 5YVE PHE A 5 UNP P56373 EXPRESSION TAG SEQADV 5YVE PRO A 13 UNP P56373 THR 13 ENGINEERED MUTATION SEQADV 5YVE VAL A 15 UNP P56373 SER 15 ENGINEERED MUTATION SEQADV 5YVE ILE A 16 UNP P56373 VAL 16 ENGINEERED MUTATION SEQRES 1 A 363 SER ARG GLU PHE ASP PHE PHE THR TYR GLU THR PRO LYS SEQRES 2 A 363 VAL ILE VAL VAL LYS SER TRP THR ILE GLY ILE ILE ASN SEQRES 3 A 363 ARG VAL VAL GLN LEU LEU ILE ILE SER TYR PHE VAL GLY SEQRES 4 A 363 TRP VAL PHE LEU HIS GLU LYS ALA TYR GLN VAL ARG ASP SEQRES 5 A 363 THR ALA ILE GLU SER SER VAL VAL THR LYS VAL LYS GLY SEQRES 6 A 363 SER GLY LEU TYR ALA ASN ARG VAL MET ASP VAL SER ASP SEQRES 7 A 363 TYR VAL THR PRO PRO GLN GLY THR SER VAL PHE VAL ILE SEQRES 8 A 363 ILE THR LYS MET ILE VAL THR GLU ASN GLN MET GLN GLY SEQRES 9 A 363 PHE CYS PRO GLU SER GLU GLU LYS TYR ARG CYS VAL SER SEQRES 10 A 363 ASP SER GLN CYS GLY PRO GLU ARG LEU PRO GLY GLY GLY SEQRES 11 A 363 ILE LEU THR GLY ARG CYS VAL ASN TYR SER SER VAL LEU SEQRES 12 A 363 ARG THR CYS GLU ILE GLN GLY TRP CYS PRO THR GLU VAL SEQRES 13 A 363 ASP THR VAL GLU THR PRO ILE MET MET GLU ALA GLU ASN SEQRES 14 A 363 PHE THR ILE PHE ILE LYS ASN SER ILE ARG PHE PRO LEU SEQRES 15 A 363 PHE ASN PHE GLU LYS GLY ASN LEU LEU PRO ASN LEU THR SEQRES 16 A 363 ALA ARG ASP MET LYS THR CYS ARG PHE HIS PRO ASP LYS SEQRES 17 A 363 ASP PRO PHE CYS PRO ILE LEU ARG VAL GLY ASP VAL VAL SEQRES 18 A 363 LYS PHE ALA GLY GLN ASP PHE ALA LYS LEU ALA ARG THR SEQRES 19 A 363 GLY GLY VAL LEU GLY ILE LYS ILE GLY TRP VAL CYS ASP SEQRES 20 A 363 LEU ASP LYS ALA TRP ASP GLN CYS ILE PRO LYS TYR SER SEQRES 21 A 363 PHE THR ARG LEU ASP SER VAL SER GLU LYS SER SER VAL SEQRES 22 A 363 SER PRO GLY TYR ASN PHE ARG PHE ALA LYS TYR TYR LYS SEQRES 23 A 363 MET GLU ASN GLY SER GLU TYR ARG THR LEU LEU LYS ALA SEQRES 24 A 363 PHE GLY ILE ARG PHE ASP VAL LEU VAL TYR GLY ASN ALA SEQRES 25 A 363 GLY LYS PHE ASN ILE ILE PRO THR ILE ILE SER SER VAL SEQRES 26 A 363 ALA ALA PHE THR SER VAL GLY VAL GLY THR VAL LEU CYS SEQRES 27 A 363 ASP ILE ILE LEU LEU ASN PHE LEU LYS GLY ALA ASP GLN SEQRES 28 A 363 TYR LYS ALA LYS LYS PHE GLU GLU VAL ASN GLU THR HET MG A 401 1 HET NA A 402 1 HET NAG A 403 14 HET NAG A 404 14 HET AF9 A 405 24 HETNAM MG MAGNESIUM ION HETNAM NA SODIUM ION HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM AF9 5-[2,4-BIS(AZANYL)PYRIMIDIN-5-YL]OXY-2-METHOXY-4- HETNAM 2 AF9 PROPAN-2-YL-BENZENESULFONAMIDE HETSYN AF9 AF-219 FORMUL 2 MG MG 2+ FORMUL 3 NA NA 1+ FORMUL 4 NAG 2(C8 H15 N O6) FORMUL 6 AF9 C14 H19 N5 O4 S HELIX 1 AA1 TRP A 21 LYS A 47 1 27 HELIX 2 AA2 ASP A 76 TYR A 80 1 5 HELIX 3 AA3 GLU A 111 ARG A 115 5 5 HELIX 4 AA4 SER A 118 GLY A 123 5 6 HELIX 5 AA5 MET A 165 ASN A 170 5 6 HELIX 6 AA6 LEU A 192 THR A 196 5 5 HELIX 7 AA7 VAL A 218 ALA A 225 1 8 HELIX 8 AA8 ASP A 228 GLY A 236 1 9 HELIX 9 AA9 ALA A 252 CYS A 256 5 5 HELIX 10 AB1 ASN A 317 PHE A 346 1 30 SHEET 1 AA1 4 GLN A 50 ASP A 53 0 SHEET 2 AA1 4 GLU A 293 PHE A 316 -1 O ALA A 313 N ASP A 53 SHEET 3 AA1 4 VAL A 89 PRO A 108 -1 N GLN A 102 O ARG A 295 SHEET 4 AA1 4 VAL A 81 THR A 82 -1 N THR A 82 O VAL A 91 SHEET 1 AA2 5 LEU A 133 ASN A 139 0 SHEET 2 AA2 5 ARG A 145 CYS A 153 -1 O GLU A 148 N ARG A 136 SHEET 3 AA2 5 VAL A 81 THR A 82 0 SHEET 4 AA2 5 GLU A 293 PHE A 316 0 SHEET 5 AA2 5 ASN A 279 LYS A 287 -1 N PHE A 280 O ALA A 300 SHEET 1 AA3 4 LYS A 259 ARG A 264 0 SHEET 2 AA3 4 GLY A 237 ASP A 248 -1 N GLY A 240 O THR A 263 SHEET 3 AA3 4 GLU A 293 PHE A 316 1 O TYR A 310 N ILE A 243 SHEET 4 AA3 4 ASN A 279 LYS A 287 -1 N PHE A 280 O ALA A 300 SHEET 1 AA4 3 GLU A 57 LYS A 65 0 SHEET 2 AA4 3 THR A 172 PHE A 181 -1 O PHE A 174 N LYS A 63 SHEET 3 AA4 3 PHE A 186 GLY A 189 -1 O LYS A 188 N ILE A 179 SHEET 1 AA5 3 GLU A 57 LYS A 65 0 SHEET 2 AA5 3 THR A 172 PHE A 181 -1 O PHE A 174 N LYS A 63 SHEET 3 AA5 3 ILE A 215 ARG A 217 -1 O LEU A 216 N ILE A 173 SHEET 1 AA6 2 GLY A 68 TYR A 70 0 SHEET 2 AA6 2 ARG A 73 MET A 75 -1 O ARG A 73 N TYR A 70 SSBOND 1 CYS A 107 CYS A 153 1555 1555 2.03 SSBOND 2 CYS A 116 CYS A 137 1555 1555 2.03 SSBOND 3 CYS A 122 CYS A 147 1555 1555 2.03 SSBOND 4 CYS A 203 CYS A 213 1555 1555 2.03 SSBOND 5 CYS A 247 CYS A 256 1555 1555 2.03 LINK ND2 ASN A 170 C1 NAG A 403 1555 1555 1.44 LINK ND2 ASN A 290 C1 NAG A 404 1555 1555 1.44 LINK OE1 GLU A 111 MG MG A 401 1555 1555 2.63 LINK OE2 GLU A 111 MG MG A 401 1555 1555 2.00 LINK OD2 ASP A 158 MG MG A 401 1555 1555 2.71 CISPEP 1 THR A 82 PRO A 83 0 -2.22 CISPEP 2 CYS A 153 PRO A 154 0 1.58 CRYST1 119.613 119.613 235.691 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008360 0.004827 0.000000 0.00000 SCALE2 0.000000 0.009654 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004243 0.00000