HEADER VIRAL PROTEIN 26-NOV-17 5YVJ TITLE CRYSTAL STRUCTURE OF FULL LENGTH NS2B47-NS3 (GD4NS2BNS3) FROM DENGUE TITLE 2 VIRUS 4 IN OPEN CONFORMATION COMPND MOL_ID: 1; COMPND 2 MOLECULE: GENOME POLYPROTEIN; COMPND 3 CHAIN: B; COMPND 4 FRAGMENT: UNP RESIDUES 1475-2092; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: GENOME POLYPROTEIN; COMPND 9 CHAIN: C; COMPND 10 FRAGMENT: UNP RESIDUES 1393-1439; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DENGUE VIRUS 4; SOURCE 3 ORGANISM_TAXID: 11070; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: DENGUE VIRUS 4; SOURCE 8 ORGANISM_TAXID: 11070; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SERINE PROTEASE, HELICASE, NON-STRUCTURAL PROTEIN 3, DENGUE, KEYWDS 2 FLAVIVIRUS, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR W.W.PHOO,A.EL SAHILI REVDAT 2 22-NOV-23 5YVJ 1 REMARK REVDAT 1 28-NOV-18 5YVJ 0 JRNL AUTH W.W.PHOO,A.E.SAHILI,Z.Z.ZHANG,M.W.CHEN,S.VASUDEVAN,J.LESCAR, JRNL AUTH 2 D.LUO JRNL TITL CRYSTAL STRUCTURES OF UNLINKED FULL LENGTH NS3 FROM DENGUE JRNL TITL 2 VIRUS PROVIDE INSIGHTS INTO DYNAMICS OF PROTEASE DOMAIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.51 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.51 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.05 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.2 REMARK 3 NUMBER OF REFLECTIONS : 22644 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 1137 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.0586 - 5.0142 0.97 2769 135 0.1677 0.2117 REMARK 3 2 5.0142 - 3.9807 0.97 2735 147 0.1514 0.2019 REMARK 3 3 3.9807 - 3.4777 0.97 2729 123 0.1776 0.2277 REMARK 3 4 3.4777 - 3.1598 0.98 2721 161 0.2001 0.2727 REMARK 3 5 3.1598 - 2.9334 0.98 2724 143 0.2231 0.2823 REMARK 3 6 2.9334 - 2.7605 0.95 2666 138 0.2278 0.2858 REMARK 3 7 2.7605 - 2.6222 0.96 2626 139 0.2385 0.3017 REMARK 3 8 2.6222 - 2.5081 0.92 2537 151 0.2650 0.3696 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.340 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.480 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 40.99 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 4824 REMARK 3 ANGLE : 0.846 6536 REMARK 3 CHIRALITY : 0.032 716 REMARK 3 PLANARITY : 0.004 848 REMARK 3 DIHEDRAL : 12.860 1797 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 18 THROUGH 150 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.7104 47.6000 28.8068 REMARK 3 T TENSOR REMARK 3 T11: 0.6246 T22: 0.4983 REMARK 3 T33: 0.3615 T12: 0.0492 REMARK 3 T13: 0.0279 T23: -0.0048 REMARK 3 L TENSOR REMARK 3 L11: 4.4444 L22: 4.1052 REMARK 3 L33: 6.6663 L12: 1.4701 REMARK 3 L13: -0.1793 L23: 1.2987 REMARK 3 S TENSOR REMARK 3 S11: -0.0955 S12: 0.3556 S13: 0.3491 REMARK 3 S21: -0.5665 S22: 0.2503 S23: 0.0282 REMARK 3 S31: -0.4442 S32: 0.2687 S33: -0.1352 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 151 THROUGH 191 ) REMARK 3 ORIGIN FOR THE GROUP (A): 42.3954 59.7416 45.4309 REMARK 3 T TENSOR REMARK 3 T11: 0.5141 T22: 0.4500 REMARK 3 T33: 0.4406 T12: 0.0217 REMARK 3 T13: -0.0888 T23: 0.0152 REMARK 3 L TENSOR REMARK 3 L11: 1.2203 L22: 0.4855 REMARK 3 L33: 3.8495 L12: 0.6113 REMARK 3 L13: 2.2619 L23: 1.3441 REMARK 3 S TENSOR REMARK 3 S11: -0.5467 S12: -0.2334 S13: 0.7069 REMARK 3 S21: -0.6040 S22: -0.2089 S23: 0.4022 REMARK 3 S31: -0.5172 S32: -0.5238 S33: 0.6691 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 192 THROUGH 324 ) REMARK 3 ORIGIN FOR THE GROUP (A): 59.0592 52.0348 58.8595 REMARK 3 T TENSOR REMARK 3 T11: 0.2360 T22: 0.2578 REMARK 3 T33: 0.2171 T12: -0.0134 REMARK 3 T13: 0.0302 T23: 0.0000 REMARK 3 L TENSOR REMARK 3 L11: 3.7706 L22: 3.4386 REMARK 3 L33: 3.2869 L12: -0.0576 REMARK 3 L13: -0.1649 L23: -0.7127 REMARK 3 S TENSOR REMARK 3 S11: -0.0651 S12: 0.3372 S13: -0.0247 REMARK 3 S21: -0.3150 S22: -0.0849 S23: -0.1386 REMARK 3 S31: 0.0432 S32: 0.1331 S33: 0.1378 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 325 THROUGH 618 ) REMARK 3 ORIGIN FOR THE GROUP (A): 46.8794 40.4682 74.6062 REMARK 3 T TENSOR REMARK 3 T11: 0.2635 T22: 0.2388 REMARK 3 T33: 0.2697 T12: 0.0312 REMARK 3 T13: 0.0587 T23: 0.0016 REMARK 3 L TENSOR REMARK 3 L11: 1.9758 L22: 0.9836 REMARK 3 L33: 2.0688 L12: 0.2689 REMARK 3 L13: 1.1254 L23: -0.4423 REMARK 3 S TENSOR REMARK 3 S11: 0.0802 S12: -0.1487 S13: -0.1665 REMARK 3 S21: 0.1351 S22: -0.0092 S23: 0.0093 REMARK 3 S31: 0.0764 S32: 0.0038 S33: -0.0963 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 49 THROUGH 63 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.8045 47.2345 22.5132 REMARK 3 T TENSOR REMARK 3 T11: 0.7056 T22: 0.5207 REMARK 3 T33: 0.3882 T12: -0.0236 REMARK 3 T13: 0.0357 T23: -0.0272 REMARK 3 L TENSOR REMARK 3 L11: 8.5535 L22: 7.8988 REMARK 3 L33: 9.2751 L12: -4.8833 REMARK 3 L13: 5.9723 L23: -4.4046 REMARK 3 S TENSOR REMARK 3 S11: -0.5246 S12: -0.5722 S13: 0.0526 REMARK 3 S21: -0.4555 S22: 0.3726 S23: 0.3362 REMARK 3 S31: 0.3042 S32: -0.2283 S33: 0.1564 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5YVJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-NOV-17. REMARK 100 THE DEPOSITION ID IS D_1300005970. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-NOV-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22654 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.508 REMARK 200 RESOLUTION RANGE LOW (A) : 45.051 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 200 DATA REDUNDANCY : 2.400 REMARK 200 R MERGE (I) : 0.09300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.5200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.51 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.9 REMARK 200 DATA REDUNDANCY IN SHELL : 2.40 REMARK 200 R MERGE FOR SHELL (I) : 0.39400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2VBC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.41 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.53 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M MES PH7.5, 15% PEG 6000, PH 6.0, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 43.40500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2460 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28410 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER B 1 REMARK 465 GLY B 2 REMARK 465 ALA B 3 REMARK 465 LEU B 4 REMARK 465 TRP B 5 REMARK 465 ASP B 6 REMARK 465 VAL B 7 REMARK 465 PRO B 8 REMARK 465 SER B 9 REMARK 465 PRO B 10 REMARK 465 ALA B 11 REMARK 465 ALA B 12 REMARK 465 THR B 13 REMARK 465 GLN B 14 REMARK 465 LYS B 15 REMARK 465 ALA B 16 REMARK 465 THR B 17 REMARK 465 THR B 120 REMARK 465 GLY B 121 REMARK 465 GLU B 122 REMARK 465 ILE B 123 REMARK 465 VAL B 154 REMARK 465 VAL B 155 REMARK 465 THR B 156 REMARK 465 LYS B 157 REMARK 465 SER B 158 REMARK 465 GLY B 159 REMARK 465 ASP B 160 REMARK 465 TYR B 161 REMARK 465 MET C 64 REMARK 465 ALA C 65 REMARK 465 ASP C 66 REMARK 465 ILE C 67 REMARK 465 THR C 68 REMARK 465 GLY C 69 REMARK 465 SER C 70 REMARK 465 SER C 71 REMARK 465 PRO C 72 REMARK 465 ILE C 73 REMARK 465 ILE C 74 REMARK 465 GLU C 75 REMARK 465 VAL C 76 REMARK 465 LYS C 77 REMARK 465 GLN C 78 REMARK 465 ASP C 79 REMARK 465 GLU C 80 REMARK 465 ASP C 81 REMARK 465 GLY C 82 REMARK 465 SER C 83 REMARK 465 PHE C 84 REMARK 465 SER C 85 REMARK 465 ILE C 86 REMARK 465 ARG C 87 REMARK 465 ASP C 88 REMARK 465 VAL C 89 REMARK 465 GLU C 90 REMARK 465 GLU C 91 REMARK 465 THR C 92 REMARK 465 ASN C 93 REMARK 465 MET C 94 REMARK 465 ILE C 95 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS B 33 CG CD CE NZ REMARK 470 GLU B 61 CG CD OE1 OE2 REMARK 470 ARG B 73 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 87 CG OD1 OD2 REMARK 470 ASP B 90 CG OD1 OD2 REMARK 470 GLU B 92 CG CD OE1 OE2 REMARK 470 LYS B 112 CG CD CE NZ REMARK 470 LEU B 115 CG CD1 CD2 REMARK 470 LYS B 142 CG CD CE NZ REMARK 470 ASN B 152 CG OD1 ND2 REMARK 470 VAL B 162 CG1 CG2 REMARK 470 GLU B 169 CG CD OE1 OE2 REMARK 470 GLU B 173 CG CD OE1 OE2 REMARK 470 ASP B 181 CG OD1 OD2 REMARK 470 ALA B 197 CB REMARK 470 ARG B 202 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 236 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 254 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 355 CG CD OE1 NE2 REMARK 470 GLU B 514 CG CD OE1 OE2 REMARK 470 LYS B 531 CG CD CE NZ REMARK 470 GLU C 63 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O VAL B 72 O HOH B 801 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR B 48 -165.61 -163.29 REMARK 500 ARG B 54 53.46 32.22 REMARK 500 LYS B 117 -14.87 -144.95 REMARK 500 THR B 118 -37.67 -131.78 REMARK 500 ASN B 152 103.39 -58.49 REMARK 500 ILE B 165 93.62 -66.82 REMARK 500 ILE B 171 -160.32 -71.83 REMARK 500 ASP B 175 -131.31 50.72 REMARK 500 TYR B 176 -146.55 -103.74 REMARK 500 ASP B 179 40.99 111.52 REMARK 500 GLU B 180 -159.93 -90.90 REMARK 500 PHE B 183 58.75 -94.40 REMARK 500 PRO B 239 77.86 -69.02 REMARK 500 ARG B 274 41.29 -100.86 REMARK 500 PHE B 325 63.03 -116.04 REMARK 500 LYS B 480 51.92 -90.68 REMARK 500 ASN B 481 51.17 -115.69 REMARK 500 PRO B 511 -7.17 -59.39 REMARK 500 GLU B 514 33.12 -98.44 REMARK 500 ARG B 592 78.24 -159.62 REMARK 500 ASP C 50 42.29 -159.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 701 DBREF 5YVJ B 1 618 UNP F8TEL4 F8TEL4_9FLAV 1475 2092 DBREF 5YVJ C 49 95 UNP Q2YHE8 Q2YHE8_9FLAV 1393 1439 SEQADV 5YVJ ALA B 135 UNP F8TEL4 SER 1609 ENGINEERED MUTATION SEQRES 1 B 618 SER GLY ALA LEU TRP ASP VAL PRO SER PRO ALA ALA THR SEQRES 2 B 618 GLN LYS ALA THR LEU SER GLU GLY VAL TYR ARG ILE MET SEQRES 3 B 618 GLN ARG GLY LEU PHE GLY LYS THR GLN VAL GLY VAL GLY SEQRES 4 B 618 ILE HIS MET GLU GLY VAL PHE HIS THR MET TRP HIS VAL SEQRES 5 B 618 THR ARG GLY SER VAL ILE CYS HIS GLU THR GLY ARG LEU SEQRES 6 B 618 GLU PRO SER TRP ALA ASP VAL ARG ASN ASP MET ILE SER SEQRES 7 B 618 TYR GLY GLY GLY TRP ARG LEU GLY ASP LYS TRP ASP LYS SEQRES 8 B 618 GLU GLU ASP VAL GLN VAL LEU ALA ILE GLU PRO GLY LYS SEQRES 9 B 618 ASN PRO LYS HIS VAL GLN THR LYS PRO GLY LEU PHE LYS SEQRES 10 B 618 THR LEU THR GLY GLU ILE GLY ALA VAL THR LEU ASP PHE SEQRES 11 B 618 LYS PRO GLY THR ALA GLY SER PRO ILE ILE ASN LYS LYS SEQRES 12 B 618 GLY LYS VAL ILE GLY LEU TYR GLY ASN GLY VAL VAL THR SEQRES 13 B 618 LYS SER GLY ASP TYR VAL SER ALA ILE THR GLN ALA GLU SEQRES 14 B 618 ARG ILE GLY GLU PRO ASP TYR GLU VAL ASP GLU ASP ILE SEQRES 15 B 618 PHE ARG LYS LYS ARG LEU THR ILE MET ASP LEU HIS PRO SEQRES 16 B 618 GLY ALA GLY LYS THR LYS ARG ILE LEU PRO SER ILE VAL SEQRES 17 B 618 ARG GLU ALA LEU LYS ARG ARG LEU ARG THR LEU ILE LEU SEQRES 18 B 618 ALA PRO THR ARG VAL VAL ALA ALA GLU MET GLU GLU ALA SEQRES 19 B 618 LEU ARG GLY LEU PRO ILE ARG TYR GLN THR PRO ALA VAL SEQRES 20 B 618 LYS SER GLU HIS THR GLY ARG GLU ILE VAL ASP LEU MET SEQRES 21 B 618 CYS HIS ALA THR PHE THR THR ARG LEU LEU SER SER THR SEQRES 22 B 618 ARG VAL PRO ASN TYR ASN LEU ILE VAL MET ASP GLU ALA SEQRES 23 B 618 HIS PHE THR ASP PRO CYS SER VAL ALA ALA ARG GLY TYR SEQRES 24 B 618 ILE SER THR ARG VAL GLU MET GLY GLU ALA ALA ALA ILE SEQRES 25 B 618 PHE MET THR ALA THR PRO PRO GLY SER ILE ASP PRO PHE SEQRES 26 B 618 PRO GLN SER ASN SER PRO ILE GLU ASP ILE GLU ARG GLU SEQRES 27 B 618 ILE PRO GLU ARG SER TRP ASN THR GLY PHE ASP TRP ILE SEQRES 28 B 618 THR ASP TYR GLN GLY LYS THR VAL TRP PHE VAL PRO SER SEQRES 29 B 618 ILE LYS ALA GLY ASN ASP ILE ALA ASN CYS LEU ARG LYS SEQRES 30 B 618 SER GLY LYS LYS VAL ILE GLN LEU SER ARG LYS THR PHE SEQRES 31 B 618 ASP THR GLU TYR PRO LYS THR LYS LEU THR ASP TRP ASP SEQRES 32 B 618 PHE VAL VAL THR THR ASP ILE SER GLU MET GLY ALA ASN SEQRES 33 B 618 PHE ARG ALA GLY ARG VAL ILE ASP PRO ARG ARG CYS LEU SEQRES 34 B 618 LYS PRO VAL ILE LEU THR ASP GLY PRO GLU ARG VAL ILE SEQRES 35 B 618 LEU ALA GLY PRO ILE PRO VAL THR PRO ALA SER ALA ALA SEQRES 36 B 618 GLN ARG ARG GLY ARG ILE GLY ARG ASN PRO ALA GLN GLU SEQRES 37 B 618 ASP ASP GLN TYR VAL PHE SER GLY ASP PRO LEU LYS ASN SEQRES 38 B 618 ASP GLU ASP HIS ALA HIS TRP THR GLU ALA LYS MET LEU SEQRES 39 B 618 LEU ASP ASN ILE TYR THR PRO GLU GLY ILE ILE PRO THR SEQRES 40 B 618 LEU PHE GLY PRO GLU ARG GLU LYS THR GLN ALA ILE ASP SEQRES 41 B 618 GLY GLU PHE ARG LEU ARG GLY GLU GLN ARG LYS THR PHE SEQRES 42 B 618 VAL GLU LEU MET ARG ARG GLY ASP LEU PRO VAL TRP LEU SEQRES 43 B 618 SER TYR LYS VAL ALA SER ALA GLY ILE SER TYR LYS ASP SEQRES 44 B 618 ARG GLU TRP CYS PHE THR GLY GLU ARG ASN ASN GLN ILE SEQRES 45 B 618 LEU GLU GLU ASN MET GLU VAL GLU ILE TRP THR ARG GLU SEQRES 46 B 618 GLY GLU LYS LYS LYS LEU ARG PRO LYS TRP LEU ASP ALA SEQRES 47 B 618 ARG VAL TYR ALA ASP PRO MET ALA LEU LYS ASP PHE LYS SEQRES 48 B 618 GLU PHE ALA SER GLY ARG LYS SEQRES 1 C 47 ALA ASP LEU SER LEU GLU LYS ALA ALA ASN VAL GLN TRP SEQRES 2 C 47 ASP GLU MET ALA ASP ILE THR GLY SER SER PRO ILE ILE SEQRES 3 C 47 GLU VAL LYS GLN ASP GLU ASP GLY SER PHE SER ILE ARG SEQRES 4 C 47 ASP VAL GLU GLU THR ASN MET ILE HET GOL B 701 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL C3 H8 O3 FORMUL 4 HOH *124(H2 O) HELIX 1 AA1 MET B 49 ARG B 54 1 6 HELIX 2 AA2 ARG B 202 ARG B 214 1 13 HELIX 3 AA3 THR B 224 LEU B 235 1 12 HELIX 4 AA4 HIS B 262 SER B 272 1 11 HELIX 5 AA5 ASP B 290 MET B 306 1 17 HELIX 6 AA6 PHE B 348 TYR B 354 1 7 HELIX 7 AA7 SER B 364 SER B 378 1 15 HELIX 8 AA8 THR B 389 THR B 400 1 12 HELIX 9 AA9 ASP B 409 MET B 413 5 5 HELIX 10 AB1 THR B 450 GLY B 459 1 10 HELIX 11 AB2 HIS B 485 ASP B 496 1 12 HELIX 12 AB3 PHE B 509 GLU B 514 1 6 HELIX 13 AB4 ARG B 526 ARG B 539 1 14 HELIX 14 AB5 PRO B 543 ALA B 553 1 11 HELIX 15 AB6 ARG B 560 PHE B 564 5 5 HELIX 16 AB7 GLU B 567 GLN B 571 5 5 HELIX 17 AB8 ASP B 597 TYR B 601 5 5 HELIX 18 AB9 ASP B 603 SER B 615 1 13 SHEET 1 AA1 8 GLY B 63 LEU B 65 0 SHEET 2 AA1 8 ILE B 58 HIS B 60 -1 N ILE B 58 O LEU B 65 SHEET 3 AA1 8 LEU C 51 ALA C 57 1 O LEU C 51 N CYS B 59 SHEET 4 AA1 8 GLY B 21 GLY B 29 -1 N VAL B 22 O ALA C 57 SHEET 5 AA1 8 GLY B 32 MET B 42 -1 O GLY B 37 N ILE B 25 SHEET 6 AA1 8 VAL B 45 THR B 48 -1 O HIS B 47 N ILE B 40 SHEET 7 AA1 8 MET B 76 TYR B 79 -1 O TYR B 79 N PHE B 46 SHEET 8 AA1 8 PRO B 67 ASP B 71 -1 N ASP B 71 O MET B 76 SHEET 1 AA2 6 LYS B 107 THR B 111 0 SHEET 2 AA2 6 VAL B 95 ALA B 99 -1 N VAL B 97 O VAL B 109 SHEET 3 AA2 6 PRO B 138 ILE B 140 -1 O ILE B 140 N GLN B 96 SHEET 4 AA2 6 VAL B 146 TYR B 150 -1 O ILE B 147 N ILE B 139 SHEET 5 AA2 6 SER B 163 THR B 166 -1 O THR B 166 N LEU B 149 SHEET 6 AA2 6 ALA B 125 VAL B 126 -1 N VAL B 126 O SER B 163 SHEET 1 AA3 6 ARG B 187 MET B 191 0 SHEET 2 AA3 6 ALA B 310 MET B 314 1 O ALA B 311 N THR B 189 SHEET 3 AA3 6 LEU B 280 ASP B 284 1 N MET B 283 O MET B 314 SHEET 4 AA3 6 THR B 218 ALA B 222 1 N LEU B 221 O VAL B 282 SHEET 5 AA3 6 VAL B 257 CYS B 261 1 O ASP B 258 N ILE B 220 SHEET 6 AA3 6 ILE B 240 TYR B 242 1 N ARG B 241 O VAL B 257 SHEET 1 AA4 6 ILE B 332 GLU B 336 0 SHEET 2 AA4 6 ASP B 470 PHE B 474 1 O ASP B 470 N GLU B 333 SHEET 3 AA4 6 ARG B 421 ASP B 424 1 N ASP B 424 O VAL B 473 SHEET 4 AA4 6 THR B 358 PHE B 361 1 N VAL B 359 O ILE B 423 SHEET 5 AA4 6 PHE B 404 THR B 407 1 O VAL B 405 N TRP B 360 SHEET 6 AA4 6 VAL B 382 LEU B 385 1 N ILE B 383 O VAL B 406 SHEET 1 AA5 2 ARG B 427 LEU B 434 0 SHEET 2 AA5 2 ARG B 440 PRO B 448 -1 O ILE B 447 N CYS B 428 SHEET 1 AA6 2 LEU B 573 GLU B 574 0 SHEET 2 AA6 2 MET B 577 GLU B 578 -1 O MET B 577 N GLU B 574 SHEET 1 AA7 2 GLU B 580 TRP B 582 0 SHEET 2 AA7 2 LYS B 588 LYS B 590 -1 O LYS B 589 N ILE B 581 CISPEP 1 GLY B 172 GLU B 173 0 22.55 CISPEP 2 GLY B 445 PRO B 446 0 0.40 SITE 1 AC1 6 GLY B 196 ALA B 197 GLY B 198 LYS B 199 SITE 2 AC1 6 THR B 200 LYS B 201 CRYST1 52.780 86.810 75.900 90.00 93.07 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018947 0.000000 0.001016 0.00000 SCALE2 0.000000 0.011519 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013194 0.00000