HEADER VIRAL PROTEIN 27-NOV-17 5YVV TITLE CRYSTAL STRUCTURE OF FULL LENGTH NS3 PROTEIN (GD4NS2BNS3) FROM DENV4 TITLE 2 IN CLOSED CONFORMATION COMPND MOL_ID: 1; COMPND 2 MOLECULE: GENOME POLYPROTEIN; COMPND 3 CHAIN: B; COMPND 4 FRAGMENT: UNP RESIDUES 1494-2092; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: GENOME POLYPROTEIN; COMPND 9 CHAIN: A; COMPND 10 FRAGMENT: UNP RESIDUES 1393-1439; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DENGUE VIRUS 4; SOURCE 3 ORGANISM_TAXID: 11070; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: DENGUE VIRUS 4; SOURCE 8 ORGANISM_TAXID: 11070; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SERINE PROTEASE, NON-STRUCTURAL PROTEIN 3, DEAH HELICASE, ATPASE, KEYWDS 2 DENGUE VIRUS, FLAVIVIRUS, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR W.W.PHOO,A.E.SAHILI REVDAT 2 22-NOV-23 5YVV 1 REMARK REVDAT 1 05-DEC-18 5YVV 0 JRNL AUTH W.W.PHOO,A.E.SAHILI,Z.Z.ZHANG,M.W.CHEN,J.LESCAR,S.VASUDEVAN, JRNL AUTH 2 D.LUO JRNL TITL CRYSTAL STRUCTURES OF UNLINKED FULL LENGTH NS3 FROM DENGUE JRNL TITL 2 VIRUS PROVIDE INSIGHTS INTO DYNAMICS OF PROTEASE DOMAIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.41 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 13693 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.235 REMARK 3 R VALUE (WORKING SET) : 0.233 REMARK 3 FREE R VALUE : 0.279 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.260 REMARK 3 FREE R VALUE TEST SET COUNT : 583 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.4190 - 4.9142 1.00 3342 143 0.2088 0.2396 REMARK 3 2 4.9142 - 3.9012 1.00 3297 147 0.2110 0.2700 REMARK 3 3 3.9012 - 3.4083 1.00 3281 140 0.2652 0.3245 REMARK 3 4 3.4083 - 3.0968 0.98 3190 153 0.3202 0.3495 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.510 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.360 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 4877 REMARK 3 ANGLE : 0.651 6628 REMARK 3 CHIRALITY : 0.024 743 REMARK 3 PLANARITY : 0.003 868 REMARK 3 DIHEDRAL : 10.846 1773 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 20 THROUGH 180 ) REMARK 3 ORIGIN FOR THE GROUP (A): 67.3498 17.9644 128.8457 REMARK 3 T TENSOR REMARK 3 T11: 1.2717 T22: 0.8614 REMARK 3 T33: 1.0520 T12: -0.0199 REMARK 3 T13: -0.3160 T23: 0.0386 REMARK 3 L TENSOR REMARK 3 L11: 1.0700 L22: 0.9746 REMARK 3 L33: 1.6384 L12: -1.2853 REMARK 3 L13: 0.7842 L23: -0.2625 REMARK 3 S TENSOR REMARK 3 S11: -0.4039 S12: -0.3906 S13: 0.1129 REMARK 3 S21: -0.0694 S22: 0.1525 S23: 0.1470 REMARK 3 S31: -0.2264 S32: -0.1326 S33: 0.2898 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 181 THROUGH 324 ) REMARK 3 ORIGIN FOR THE GROUP (A): 38.2538 23.4653 98.7503 REMARK 3 T TENSOR REMARK 3 T11: 0.3115 T22: 0.4169 REMARK 3 T33: 0.3977 T12: -0.0504 REMARK 3 T13: 0.1051 T23: -0.1077 REMARK 3 L TENSOR REMARK 3 L11: 5.0826 L22: 5.2277 REMARK 3 L33: 4.2420 L12: -0.6507 REMARK 3 L13: -1.2136 L23: 1.3980 REMARK 3 S TENSOR REMARK 3 S11: 0.1949 S12: -0.3562 S13: 0.0254 REMARK 3 S21: 0.3213 S22: -0.7247 S23: 0.4549 REMARK 3 S31: -0.0998 S32: -0.5150 S33: 0.3877 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 325 THROUGH 618 ) REMARK 3 ORIGIN FOR THE GROUP (A): 50.1841 10.2243 83.2594 REMARK 3 T TENSOR REMARK 3 T11: 0.3952 T22: 0.3666 REMARK 3 T33: 0.3600 T12: -0.0407 REMARK 3 T13: 0.0954 T23: 0.0431 REMARK 3 L TENSOR REMARK 3 L11: 2.9488 L22: 2.8366 REMARK 3 L33: 3.8684 L12: 0.1115 REMARK 3 L13: 1.7966 L23: 1.9469 REMARK 3 S TENSOR REMARK 3 S11: 0.3778 S12: -0.2861 S13: -0.0563 REMARK 3 S21: -0.2108 S22: -0.2903 S23: -0.1182 REMARK 3 S31: 0.1549 S32: -0.4007 S33: -0.1098 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 49 THROUGH 53 ) REMARK 3 ORIGIN FOR THE GROUP (A): 56.5479 5.4369 127.5572 REMARK 3 T TENSOR REMARK 3 T11: 1.0583 T22: 1.8052 REMARK 3 T33: 1.4641 T12: 0.2049 REMARK 3 T13: 0.1343 T23: 0.2910 REMARK 3 L TENSOR REMARK 3 L11: 2.1471 L22: 5.8658 REMARK 3 L33: 0.3665 L12: 3.3692 REMARK 3 L13: -0.0992 L23: 0.2966 REMARK 3 S TENSOR REMARK 3 S11: 0.1097 S12: -0.2269 S13: -0.4206 REMARK 3 S21: 0.4232 S22: -0.5209 S23: 1.0558 REMARK 3 S31: 0.2818 S32: -1.5217 S33: 0.5260 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 54 THROUGH 58 ) REMARK 3 ORIGIN FOR THE GROUP (A): 57.4292 13.9889 137.6337 REMARK 3 T TENSOR REMARK 3 T11: 1.5795 T22: 1.0405 REMARK 3 T33: 1.5551 T12: -0.1533 REMARK 3 T13: -0.0845 T23: 0.1608 REMARK 3 L TENSOR REMARK 3 L11: 0.1424 L22: 2.7703 REMARK 3 L33: 4.7870 L12: 0.6216 REMARK 3 L13: -0.8119 L23: -3.6217 REMARK 3 S TENSOR REMARK 3 S11: -0.8704 S12: 0.3808 S13: 0.3325 REMARK 3 S21: 0.9299 S22: 0.3072 S23: 0.6940 REMARK 3 S31: -0.2885 S32: 0.1696 S33: 0.4633 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 59 THROUGH 63 ) REMARK 3 ORIGIN FOR THE GROUP (A): 64.3569 25.4506 143.1310 REMARK 3 T TENSOR REMARK 3 T11: 1.6658 T22: 1.2414 REMARK 3 T33: 1.7468 T12: 0.2573 REMARK 3 T13: -0.2424 T23: -0.2626 REMARK 3 L TENSOR REMARK 3 L11: 0.9878 L22: 3.9201 REMARK 3 L33: 9.4043 L12: -1.5092 REMARK 3 L13: -1.4488 L23: -1.2029 REMARK 3 S TENSOR REMARK 3 S11: -0.7668 S12: -0.1690 S13: 0.6747 REMARK 3 S21: 0.5097 S22: 0.3039 S23: 0.9006 REMARK 3 S31: -0.7108 S32: -0.0319 S33: 0.5534 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 64 THROUGH 73 ) REMARK 3 ORIGIN FOR THE GROUP (A): 78.3356 22.3951 142.7754 REMARK 3 T TENSOR REMARK 3 T11: 0.7612 T22: 1.4601 REMARK 3 T33: 0.8182 T12: 0.1618 REMARK 3 T13: -0.3451 T23: -0.1303 REMARK 3 L TENSOR REMARK 3 L11: 0.2862 L22: 4.5213 REMARK 3 L33: 3.8646 L12: -0.7432 REMARK 3 L13: 0.5542 L23: 1.2414 REMARK 3 S TENSOR REMARK 3 S11: -0.9159 S12: 0.5348 S13: 0.7160 REMARK 3 S21: -0.5483 S22: 0.3542 S23: 0.3096 REMARK 3 S31: -0.6949 S32: 0.9184 S33: 0.3627 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 74 THROUGH 78 ) REMARK 3 ORIGIN FOR THE GROUP (A): 85.4767 19.8137 122.7417 REMARK 3 T TENSOR REMARK 3 T11: 1.9537 T22: 1.1343 REMARK 3 T33: 1.5527 T12: -0.4183 REMARK 3 T13: -0.8554 T23: 0.2228 REMARK 3 L TENSOR REMARK 3 L11: 9.3768 L22: 6.7697 REMARK 3 L33: 3.4662 L12: -6.5398 REMARK 3 L13: -5.6813 L23: 3.7203 REMARK 3 S TENSOR REMARK 3 S11: 0.7119 S12: 1.6131 S13: -0.7241 REMARK 3 S21: -2.2942 S22: -0.3558 S23: 1.4779 REMARK 3 S31: -1.4900 S32: -0.8936 S33: -0.1135 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 79 THROUGH 88 ) REMARK 3 ORIGIN FOR THE GROUP (A): 83.9332 14.8757 120.0143 REMARK 3 T TENSOR REMARK 3 T11: 2.3346 T22: 1.1649 REMARK 3 T33: 1.7467 T12: -0.2560 REMARK 3 T13: -0.1880 T23: 0.1848 REMARK 3 L TENSOR REMARK 3 L11: 0.5147 L22: 3.6975 REMARK 3 L33: 1.8745 L12: 0.7621 REMARK 3 L13: -0.3195 L23: 1.6040 REMARK 3 S TENSOR REMARK 3 S11: 0.7615 S12: -0.1504 S13: -0.8865 REMARK 3 S21: -1.0520 S22: -1.3697 S23: 0.3327 REMARK 3 S31: 0.2002 S32: 0.6888 S33: 0.5800 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5YVV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-NOV-17. REMARK 100 THE DEPOSITION ID IS D_1300005990. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-DEC-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13710 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.100 REMARK 200 RESOLUTION RANGE LOW (A) : 45.410 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.07800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.31 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.40600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2VBC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.69 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M MES PH 6.5, 12% PEG6000, PH 6.0, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 44.35750 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3580 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29860 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG B 28 REMARK 465 GLY B 29 REMARK 465 SER B 30 REMARK 465 ILE B 171 REMARK 465 GLY B 172 REMARK 465 GLU B 173 REMARK 465 PRO B 174 REMARK 465 ASP B 175 REMARK 465 TYR B 176 REMARK 465 VAL A 89 REMARK 465 GLU A 90 REMARK 465 GLU A 91 REMARK 465 THR A 92 REMARK 465 ASN A 93 REMARK 465 MET A 94 REMARK 465 ILE A 95 REMARK 465 GLY A 96 REMARK 465 GLY A 97 REMARK 465 GLY A 98 REMARK 465 GLY A 99 REMARK 465 SER A 100 REMARK 465 GLY A 101 REMARK 465 GLY A 102 REMARK 465 GLY A 103 REMARK 465 GLY A 104 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU B 20 CG CD OE1 OE2 REMARK 470 TYR B 23 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG B 24 CG CD NE CZ NH1 NH2 REMARK 470 SER B 31 OG REMARK 470 LYS B 33 CG CD CE NZ REMARK 470 THR B 34 OG1 CG2 REMARK 470 HIS B 41 CG ND1 CD2 CE1 NE2 REMARK 470 MET B 42 CG SD CE REMARK 470 GLU B 43 CG CD OE1 OE2 REMARK 470 ARG B 54 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 64 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 65 CG CD1 CD2 REMARK 470 ARG B 73 CG CD NE CZ NH1 NH2 REMARK 470 TRP B 83 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP B 83 CZ3 CH2 REMARK 470 LYS B 88 CG CD CE NZ REMARK 470 LYS B 91 CG CD CE NZ REMARK 470 LEU B 98 CG CD1 CD2 REMARK 470 GLU B 101 CG CD OE1 OE2 REMARK 470 PHE B 116 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS B 117 CG CD CE NZ REMARK 470 THR B 118 OG1 CG2 REMARK 470 GLU B 122 CG CD OE1 OE2 REMARK 470 ASP B 129 CG OD1 OD2 REMARK 470 LYS B 142 CG CD CE NZ REMARK 470 LYS B 143 CG CD CE NZ REMARK 470 LYS B 145 CG CD CE NZ REMARK 470 ASP B 160 CG OD1 OD2 REMARK 470 ARG B 170 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 184 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 202 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 217 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 236 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 254 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 342 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 514 CG CD OE1 OE2 REMARK 470 LYS B 531 CG CD CE NZ REMARK 470 ARG B 568 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 589 CG CD CE NZ REMARK 470 LEU A 51 CG CD1 CD2 REMARK 470 LEU A 53 CG CD1 CD2 REMARK 470 GLU A 54 CG CD OE1 OE2 REMARK 470 LYS A 55 CG CD CE NZ REMARK 470 ASN A 58 CG OD1 ND2 REMARK 470 ILE A 73 CG1 CG2 CD1 REMARK 470 GLU A 75 CG CD OE1 OE2 REMARK 470 GLU A 80 CG CD OE1 OE2 REMARK 470 ARG A 87 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR B 48 -156.32 -142.59 REMARK 500 SER B 56 -155.71 -163.18 REMARK 500 ARG B 84 164.33 75.72 REMARK 500 ASP B 87 -163.32 -106.58 REMARK 500 PRO B 132 129.15 -37.01 REMARK 500 SER B 158 -62.96 -93.33 REMARK 500 ILE B 165 97.73 -64.91 REMARK 500 ASP B 192 85.37 -65.97 REMARK 500 PRO B 239 90.47 -65.73 REMARK 500 GLU B 255 76.84 54.90 REMARK 500 ARG B 274 31.47 -99.81 REMARK 500 ALA B 286 22.46 -78.03 REMARK 500 ARG B 342 -163.79 -123.67 REMARK 500 ASN B 345 -54.81 -124.86 REMARK 500 PHE B 348 56.12 -103.90 REMARK 500 LEU B 443 78.70 -109.01 REMARK 500 ARG B 463 -76.20 -93.50 REMARK 500 THR B 565 39.99 -99.95 REMARK 500 TYR B 601 26.55 -140.64 REMARK 500 ASN A 58 -151.54 -115.81 REMARK 500 VAL A 59 60.90 -105.23 REMARK 500 SER A 70 -109.31 -174.25 REMARK 500 SER A 83 -157.07 -107.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE STRUCTURE IS SPLIT IN TWO CHAINS DUE TO THE FACT THAT ONE CHAIN REMARK 999 COMES FOR THE COFACTOR AND THE OTHER FROM THE NS3 PROTEIN. DBREF 5YVV B 20 618 UNP F8TEL4 F8TEL4_9FLAV 1494 2092 DBREF 5YVV A 49 95 UNP F8TEL4 F8TEL4_9FLAV 1393 1439 SEQADV 5YVV SER B 30 UNP F8TEL4 LEU 1504 ENGINEERED MUTATION SEQADV 5YVV SER B 31 UNP F8TEL4 PHE 1505 ENGINEERED MUTATION SEQADV 5YVV GLY A 96 UNP F8TEL4 EXPRESSION TAG SEQADV 5YVV GLY A 97 UNP F8TEL4 EXPRESSION TAG SEQADV 5YVV GLY A 98 UNP F8TEL4 EXPRESSION TAG SEQADV 5YVV GLY A 99 UNP F8TEL4 EXPRESSION TAG SEQADV 5YVV SER A 100 UNP F8TEL4 EXPRESSION TAG SEQADV 5YVV GLY A 101 UNP F8TEL4 EXPRESSION TAG SEQADV 5YVV GLY A 102 UNP F8TEL4 EXPRESSION TAG SEQADV 5YVV GLY A 103 UNP F8TEL4 EXPRESSION TAG SEQADV 5YVV GLY A 104 UNP F8TEL4 EXPRESSION TAG SEQRES 1 B 599 GLU GLY VAL TYR ARG ILE MET GLN ARG GLY SER SER GLY SEQRES 2 B 599 LYS THR GLN VAL GLY VAL GLY ILE HIS MET GLU GLY VAL SEQRES 3 B 599 PHE HIS THR MET TRP HIS VAL THR ARG GLY SER VAL ILE SEQRES 4 B 599 CYS HIS GLU THR GLY ARG LEU GLU PRO SER TRP ALA ASP SEQRES 5 B 599 VAL ARG ASN ASP MET ILE SER TYR GLY GLY GLY TRP ARG SEQRES 6 B 599 LEU GLY ASP LYS TRP ASP LYS GLU GLU ASP VAL GLN VAL SEQRES 7 B 599 LEU ALA ILE GLU PRO GLY LYS ASN PRO LYS HIS VAL GLN SEQRES 8 B 599 THR LYS PRO GLY LEU PHE LYS THR LEU THR GLY GLU ILE SEQRES 9 B 599 GLY ALA VAL THR LEU ASP PHE LYS PRO GLY THR SER GLY SEQRES 10 B 599 SER PRO ILE ILE ASN LYS LYS GLY LYS VAL ILE GLY LEU SEQRES 11 B 599 TYR GLY ASN GLY VAL VAL THR LYS SER GLY ASP TYR VAL SEQRES 12 B 599 SER ALA ILE THR GLN ALA GLU ARG ILE GLY GLU PRO ASP SEQRES 13 B 599 TYR GLU VAL ASP GLU ASP ILE PHE ARG LYS LYS ARG LEU SEQRES 14 B 599 THR ILE MET ASP LEU HIS PRO GLY ALA GLY LYS THR LYS SEQRES 15 B 599 ARG ILE LEU PRO SER ILE VAL ARG GLU ALA LEU LYS ARG SEQRES 16 B 599 ARG LEU ARG THR LEU ILE LEU ALA PRO THR ARG VAL VAL SEQRES 17 B 599 ALA ALA GLU MET GLU GLU ALA LEU ARG GLY LEU PRO ILE SEQRES 18 B 599 ARG TYR GLN THR PRO ALA VAL LYS SER GLU HIS THR GLY SEQRES 19 B 599 ARG GLU ILE VAL ASP LEU MET CYS HIS ALA THR PHE THR SEQRES 20 B 599 THR ARG LEU LEU SER SER THR ARG VAL PRO ASN TYR ASN SEQRES 21 B 599 LEU ILE VAL MET ASP GLU ALA HIS PHE THR ASP PRO CYS SEQRES 22 B 599 SER VAL ALA ALA ARG GLY TYR ILE SER THR ARG VAL GLU SEQRES 23 B 599 MET GLY GLU ALA ALA ALA ILE PHE MET THR ALA THR PRO SEQRES 24 B 599 PRO GLY SER ILE ASP PRO PHE PRO GLN SER ASN SER PRO SEQRES 25 B 599 ILE GLU ASP ILE GLU ARG GLU ILE PRO GLU ARG SER TRP SEQRES 26 B 599 ASN THR GLY PHE ASP TRP ILE THR ASP TYR GLN GLY LYS SEQRES 27 B 599 THR VAL TRP PHE VAL PRO SER ILE LYS ALA GLY ASN ASP SEQRES 28 B 599 ILE ALA ASN CYS LEU ARG LYS SER GLY LYS LYS VAL ILE SEQRES 29 B 599 GLN LEU SER ARG LYS THR PHE ASP THR GLU TYR PRO LYS SEQRES 30 B 599 THR LYS LEU THR ASP TRP ASP PHE VAL VAL THR THR ASP SEQRES 31 B 599 ILE SER GLU MET GLY ALA ASN PHE ARG ALA GLY ARG VAL SEQRES 32 B 599 ILE ASP PRO ARG ARG CYS LEU LYS PRO VAL ILE LEU THR SEQRES 33 B 599 ASP GLY PRO GLU ARG VAL ILE LEU ALA GLY PRO ILE PRO SEQRES 34 B 599 VAL THR PRO ALA SER ALA ALA GLN ARG ARG GLY ARG ILE SEQRES 35 B 599 GLY ARG ASN PRO ALA GLN GLU ASP ASP GLN TYR VAL PHE SEQRES 36 B 599 SER GLY ASP PRO LEU LYS ASN ASP GLU ASP HIS ALA HIS SEQRES 37 B 599 TRP THR GLU ALA LYS MET LEU LEU ASP ASN ILE TYR THR SEQRES 38 B 599 PRO GLU GLY ILE ILE PRO THR LEU PHE GLY PRO GLU ARG SEQRES 39 B 599 GLU LYS THR GLN ALA ILE ASP GLY GLU PHE ARG LEU ARG SEQRES 40 B 599 GLY GLU GLN ARG LYS THR PHE VAL GLU LEU MET ARG ARG SEQRES 41 B 599 GLY ASP LEU PRO VAL TRP LEU SER TYR LYS VAL ALA SER SEQRES 42 B 599 ALA GLY ILE SER TYR LYS ASP ARG GLU TRP CYS PHE THR SEQRES 43 B 599 GLY GLU ARG ASN ASN GLN ILE LEU GLU GLU ASN MET GLU SEQRES 44 B 599 VAL GLU ILE TRP THR ARG GLU GLY GLU LYS LYS LYS LEU SEQRES 45 B 599 ARG PRO LYS TRP LEU ASP ALA ARG VAL TYR ALA ASP PRO SEQRES 46 B 599 MET ALA LEU LYS ASP PHE LYS GLU PHE ALA SER GLY ARG SEQRES 47 B 599 LYS SEQRES 1 A 56 ALA ASP LEU SER LEU GLU LYS ALA ALA ASN VAL GLN TRP SEQRES 2 A 56 ASP GLU MET ALA ASP ILE THR GLY SER SER PRO ILE ILE SEQRES 3 A 56 GLU VAL LYS GLN ASP GLU ASP GLY SER PHE SER ILE ARG SEQRES 4 A 56 ASP VAL GLU GLU THR ASN MET ILE GLY GLY GLY GLY SER SEQRES 5 A 56 GLY GLY GLY GLY HELIX 1 AA1 MET B 49 ARG B 54 1 6 HELIX 2 AA2 GLU B 180 ARG B 184 5 5 HELIX 3 AA3 ARG B 202 ARG B 214 1 13 HELIX 4 AA4 THR B 224 LEU B 235 1 12 HELIX 5 AA5 HIS B 262 SER B 272 1 11 HELIX 6 AA6 ASP B 290 MET B 306 1 17 HELIX 7 AA7 PHE B 348 TYR B 354 1 7 HELIX 8 AA8 SER B 364 SER B 378 1 15 HELIX 9 AA9 THR B 389 TYR B 394 1 6 HELIX 10 AB1 PRO B 395 THR B 400 1 6 HELIX 11 AB2 ASP B 409 MET B 413 5 5 HELIX 12 AB3 THR B 450 GLY B 459 1 10 HELIX 13 AB4 HIS B 485 ASP B 496 1 12 HELIX 14 AB5 PHE B 509 GLU B 514 1 6 HELIX 15 AB6 GLY B 527 ARG B 539 1 13 HELIX 16 AB7 PRO B 543 SER B 552 1 10 HELIX 17 AB8 ARG B 560 PHE B 564 5 5 HELIX 18 AB9 GLU B 567 GLN B 571 5 5 HELIX 19 AC1 ASP B 597 TYR B 601 5 5 HELIX 20 AC2 ASP B 603 SER B 615 1 13 SHEET 1 AA1 6 PRO B 67 ASP B 71 0 SHEET 2 AA1 6 MET B 76 TYR B 79 -1 O SER B 78 N SER B 68 SHEET 3 AA1 6 VAL B 45 THR B 48 -1 N PHE B 46 O TYR B 79 SHEET 4 AA1 6 THR B 34 MET B 42 -1 N ILE B 40 O HIS B 47 SHEET 5 AA1 6 GLY B 21 GLN B 27 -1 N TYR B 23 O GLY B 39 SHEET 6 AA1 6 GLU A 54 ALA A 57 -1 O GLU A 54 N ARG B 24 SHEET 1 AA2 2 ILE B 58 CYS B 59 0 SHEET 2 AA2 2 ARG B 64 LEU B 65 -1 O LEU B 65 N ILE B 58 SHEET 1 AA3 5 VAL B 146 TYR B 150 0 SHEET 2 AA3 5 SER B 137 ILE B 140 -1 N ILE B 139 O GLY B 148 SHEET 3 AA3 5 GLN B 96 VAL B 97 -1 N GLN B 96 O ILE B 140 SHEET 4 AA3 5 VAL B 109 THR B 111 -1 O VAL B 109 N VAL B 97 SHEET 5 AA3 5 ASP A 66 THR A 68 1 O ASP A 66 N GLN B 110 SHEET 1 AA4 2 LEU B 115 LYS B 117 0 SHEET 2 AA4 2 ILE A 73 GLU A 75 1 O ILE A 74 N LEU B 115 SHEET 1 AA5 2 ALA B 125 VAL B 126 0 SHEET 2 AA5 2 SER B 163 ALA B 164 -1 O SER B 163 N VAL B 126 SHEET 1 AA6 6 ARG B 187 MET B 191 0 SHEET 2 AA6 6 ALA B 310 MET B 314 1 O ALA B 311 N THR B 189 SHEET 3 AA6 6 LEU B 280 ASP B 284 1 N MET B 283 O MET B 314 SHEET 4 AA6 6 THR B 218 ALA B 222 1 N LEU B 219 O VAL B 282 SHEET 5 AA6 6 VAL B 257 CYS B 261 1 O ASP B 258 N ILE B 220 SHEET 6 AA6 6 ILE B 240 TYR B 242 1 N ARG B 241 O VAL B 257 SHEET 1 AA7 6 ILE B 332 GLU B 336 0 SHEET 2 AA7 6 ASP B 470 PHE B 474 1 O ASP B 470 N GLU B 333 SHEET 3 AA7 6 ARG B 421 ASP B 424 1 N ASP B 424 O VAL B 473 SHEET 4 AA7 6 THR B 358 PHE B 361 1 N PHE B 361 O ILE B 423 SHEET 5 AA7 6 PHE B 404 THR B 407 1 O THR B 407 N TRP B 360 SHEET 6 AA7 6 VAL B 382 LEU B 385 1 N ILE B 383 O PHE B 404 SHEET 1 AA8 2 ARG B 427 LEU B 434 0 SHEET 2 AA8 2 ARG B 440 PRO B 448 -1 O ILE B 447 N CYS B 428 SHEET 1 AA9 2 GLU B 580 TRP B 582 0 SHEET 2 AA9 2 LYS B 588 LYS B 590 -1 O LYS B 589 N ILE B 581 CISPEP 1 GLY B 82 TRP B 83 0 -0.85 CISPEP 2 TRP B 83 ARG B 84 0 13.59 CISPEP 3 ARG B 84 LEU B 85 0 -1.69 CISPEP 4 LEU B 85 GLY B 86 0 -0.03 CISPEP 5 PRO B 195 GLY B 196 0 1.54 CISPEP 6 GLY B 445 PRO B 446 0 -0.49 CISPEP 7 GLU B 502 GLY B 503 0 4.16 CRYST1 52.917 88.715 81.295 90.00 93.08 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018898 0.000000 0.001016 0.00000 SCALE2 0.000000 0.011272 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012319 0.00000