HEADER VIRAL PROTEIN 27-NOV-17 5YVY TITLE CRYSTAL STRUCTURE OF UNLINKED FULL LENGTH NS3 PROTEIN (ED4NS2BNS3) TITLE 2 FROM DENV4 IN CLOSED CONFORMATION COMPND MOL_ID: 1; COMPND 2 MOLECULE: GENOME POLYPROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: GENOME POLYPROTEIN; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DENGUE VIRUS 4; SOURCE 3 ORGANISM_TAXID: 11070; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: DENGUE VIRUS 4; SOURCE 8 ORGANISM_TAXID: 11070; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SERINE PROTEASE, NON-STRUCTURAL PROTEIN 3, DEAH HELICASE, ATPASE, KEYWDS 2 DENGUE VIRUS, FLAVIVIRUS, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR W.W.PHOO,A.EL SAHILI REVDAT 2 27-MAR-24 5YVY 1 REMARK REVDAT 1 28-NOV-18 5YVY 0 JRNL AUTH W.W.PHOO,A.E.SAHILI,Z.Z.ZHANG,M.W.CHEN,J.LESCAR,S.VASUDEVAN, JRNL AUTH 2 D.LUO JRNL TITL CRYSTAL STRUCTURES OF UNLINKED FULL LENGTH NS3 FROM DENGUE JRNL TITL 2 VIRUS PROVIDE INSIGHTS INTO DYNAMICS OF PROTEASE DOMAIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.97 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 84.7 REMARK 3 NUMBER OF REFLECTIONS : 10614 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.257 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 533 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.9697 - 5.0778 1.00 2985 183 0.1853 0.2472 REMARK 3 2 5.0778 - 4.0313 0.99 2948 144 0.1848 0.2264 REMARK 3 3 4.0313 - 3.5220 0.49 1443 74 0.2725 0.2952 REMARK 3 4 3.5220 - 3.2001 0.91 2705 132 0.2782 0.3526 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.440 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.480 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 4788 REMARK 3 ANGLE : 0.606 6509 REMARK 3 CHIRALITY : 0.024 727 REMARK 3 PLANARITY : 0.003 853 REMARK 3 DIHEDRAL : 11.441 1734 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 52 THROUGH 71 ) REMARK 3 ORIGIN FOR THE GROUP (A): 170.6497 19.9473 141.4889 REMARK 3 T TENSOR REMARK 3 T11: 1.5329 T22: 1.4574 REMARK 3 T33: 1.6948 T12: 0.1785 REMARK 3 T13: -0.1011 T23: 0.0469 REMARK 3 L TENSOR REMARK 3 L11: 3.6450 L22: 9.0861 REMARK 3 L33: 4.9396 L12: 3.3427 REMARK 3 L13: -1.7311 L23: 1.8326 REMARK 3 S TENSOR REMARK 3 S11: -0.3363 S12: 0.2358 S13: 2.4255 REMARK 3 S21: 0.2145 S22: 0.2121 S23: 2.9143 REMARK 3 S31: 0.4365 S32: 0.8828 S33: 0.3041 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 72 THROUGH 76 ) REMARK 3 ORIGIN FOR THE GROUP (A): 191.0772 19.8016 128.5750 REMARK 3 T TENSOR REMARK 3 T11: 2.0057 T22: 2.5358 REMARK 3 T33: 1.5527 T12: -0.4747 REMARK 3 T13: -1.0445 T23: 0.2289 REMARK 3 L TENSOR REMARK 3 L11: 9.6426 L22: 2.1990 REMARK 3 L33: 0.0899 L12: 2.6238 REMARK 3 L13: -0.5566 L23: -0.4446 REMARK 3 S TENSOR REMARK 3 S11: -0.7473 S12: 0.2062 S13: 0.9481 REMARK 3 S21: -1.4062 S22: 0.4834 S23: 0.5006 REMARK 3 S31: 1.1196 S32: 1.0663 S33: 0.2938 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 77 THROUGH 81 ) REMARK 3 ORIGIN FOR THE GROUP (A): 184.0714 13.5883 117.4722 REMARK 3 T TENSOR REMARK 3 T11: 3.3171 T22: 1.5186 REMARK 3 T33: 1.3083 T12: 0.1803 REMARK 3 T13: -0.3237 T23: 0.1803 REMARK 3 L TENSOR REMARK 3 L11: 6.0733 L22: 7.4453 REMARK 3 L33: 3.1156 L12: 6.7092 REMARK 3 L13: 4.3152 L23: 4.8102 REMARK 3 S TENSOR REMARK 3 S11: 3.0967 S12: -2.1719 S13: -1.6223 REMARK 3 S21: 1.9772 S22: -2.4884 S23: 0.2342 REMARK 3 S31: 2.0818 S32: -0.6397 S33: -0.9527 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 82 THROUGH 86 ) REMARK 3 ORIGIN FOR THE GROUP (A): 187.3172 12.8571 122.1372 REMARK 3 T TENSOR REMARK 3 T11: 2.1890 T22: 1.7760 REMARK 3 T33: 1.6846 T12: -0.8733 REMARK 3 T13: -0.1644 T23: 0.0099 REMARK 3 L TENSOR REMARK 3 L11: 2.0001 L22: 9.8205 REMARK 3 L33: 2.5916 L12: -8.9076 REMARK 3 L13: 1.4941 L23: 1.2631 REMARK 3 S TENSOR REMARK 3 S11: 0.7675 S12: 1.1230 S13: 1.3515 REMARK 3 S21: -1.5242 S22: -0.6125 S23: 1.1688 REMARK 3 S31: 1.4828 S32: -1.4280 S33: 0.0729 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 87 THROUGH 87 ) REMARK 3 ORIGIN FOR THE GROUP (A): 195.8448 16.1285 121.9780 REMARK 3 T TENSOR REMARK 3 T11: 1.3151 T22: 1.3193 REMARK 3 T33: 0.7654 T12: -0.5202 REMARK 3 T13: -0.1677 T23: 0.3485 REMARK 3 L TENSOR REMARK 3 L11: 2.0000 L22: 1.9999 REMARK 3 L33: 2.0000 L12: 2.0002 REMARK 3 L13: 4.6950 L23: 1.9998 REMARK 3 S TENSOR REMARK 3 S11: -2.4384 S12: -3.0858 S13: -2.4380 REMARK 3 S21: 2.6172 S22: 4.9692 S23: 11.0757 REMARK 3 S31: -6.8476 S32: -12.1649 S33: -2.5423 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 24 THROUGH 191 ) REMARK 3 ORIGIN FOR THE GROUP (A): 169.8924 18.4049 125.7647 REMARK 3 T TENSOR REMARK 3 T11: 1.1768 T22: 1.0612 REMARK 3 T33: 0.9787 T12: -0.1396 REMARK 3 T13: -0.1182 T23: -0.0218 REMARK 3 L TENSOR REMARK 3 L11: 2.8213 L22: 0.7922 REMARK 3 L33: 4.9742 L12: -2.1127 REMARK 3 L13: 3.4792 L23: -2.1520 REMARK 3 S TENSOR REMARK 3 S11: -0.5544 S12: -0.8678 S13: 0.3565 REMARK 3 S21: 0.4808 S22: 0.0949 S23: -0.2770 REMARK 3 S31: -0.3413 S32: -0.3450 S33: 0.3295 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 192 THROUGH 324 ) REMARK 3 ORIGIN FOR THE GROUP (A): 142.9000 20.4373 98.6863 REMARK 3 T TENSOR REMARK 3 T11: 0.3311 T22: 0.4481 REMARK 3 T33: 0.4886 T12: -0.0153 REMARK 3 T13: 0.0274 T23: -0.0341 REMARK 3 L TENSOR REMARK 3 L11: 5.9156 L22: 6.3526 REMARK 3 L33: 7.3260 L12: 0.8593 REMARK 3 L13: -1.4900 L23: 0.8460 REMARK 3 S TENSOR REMARK 3 S11: 0.3370 S12: -0.5175 S13: 0.0639 REMARK 3 S21: 0.5034 S22: -0.4496 S23: 0.5902 REMARK 3 S31: -0.0906 S32: -0.5330 S33: 0.0798 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 325 THROUGH 618 ) REMARK 3 ORIGIN FOR THE GROUP (A): 155.1493 8.2877 83.2876 REMARK 3 T TENSOR REMARK 3 T11: 0.3625 T22: 0.4311 REMARK 3 T33: 0.5045 T12: -0.0845 REMARK 3 T13: 0.0711 T23: 0.0502 REMARK 3 L TENSOR REMARK 3 L11: 3.9290 L22: 2.4767 REMARK 3 L33: 4.6301 L12: 0.3995 REMARK 3 L13: 2.4971 L23: 1.1394 REMARK 3 S TENSOR REMARK 3 S11: 0.2986 S12: -0.3687 S13: -0.4161 REMARK 3 S21: -0.1215 S22: -0.1173 S23: -0.0158 REMARK 3 S31: 0.2139 S32: -0.4025 S33: -0.2058 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5YVY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-NOV-17. REMARK 100 THE DEPOSITION ID IS D_1300005992. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-JUL-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10645 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.200 REMARK 200 RESOLUTION RANGE LOW (A) : 81.200 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 84.8 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.12300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.46 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.79300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MES PH 6.4, 10% PEG 6000, PH REMARK 280 6.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 44.38500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2560 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29630 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 49 REMARK 465 ASP A 50 REMARK 465 LEU A 51 REMARK 465 ASP A 88 REMARK 465 VAL A 89 REMARK 465 GLU A 90 REMARK 465 GLU A 91 REMARK 465 THR A 92 REMARK 465 ASN A 93 REMARK 465 MET A 94 REMARK 465 ILE A 95 REMARK 465 VAL A 96 REMARK 465 LYS A 97 REMARK 465 THR A 98 REMARK 465 GLN A 99 REMARK 465 ARG A 100 REMARK 465 SER B 1 REMARK 465 GLY B 2 REMARK 465 ALA B 3 REMARK 465 LEU B 4 REMARK 465 TRP B 5 REMARK 465 ASP B 6 REMARK 465 VAL B 7 REMARK 465 PRO B 8 REMARK 465 SER B 9 REMARK 465 PRO B 10 REMARK 465 ALA B 11 REMARK 465 ALA B 12 REMARK 465 THR B 13 REMARK 465 GLN B 14 REMARK 465 LYS B 15 REMARK 465 ALA B 16 REMARK 465 THR B 17 REMARK 465 LEU B 18 REMARK 465 SER B 19 REMARK 465 GLU B 20 REMARK 465 GLY B 21 REMARK 465 VAL B 22 REMARK 465 TYR B 23 REMARK 465 GLY B 29 REMARK 465 SER B 30 REMARK 465 SER B 31 REMARK 465 GLY B 32 REMARK 465 LYS B 33 REMARK 465 THR B 34 REMARK 465 ASN B 141 REMARK 465 LYS B 142 REMARK 465 LYS B 143 REMARK 465 GLY B 144 REMARK 465 GLY B 172 REMARK 465 GLU B 173 REMARK 465 PRO B 174 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 53 CG CD1 CD2 REMARK 470 GLU A 54 CG CD OE1 OE2 REMARK 470 LYS A 55 CG CD CE NZ REMARK 470 ASP A 66 CG OD1 OD2 REMARK 470 ILE A 67 CG1 CG2 CD1 REMARK 470 THR A 68 OG1 CG2 REMARK 470 ILE A 73 CG1 CG2 CD1 REMARK 470 GLU A 75 CG CD OE1 OE2 REMARK 470 LYS A 77 CG CD CE NZ REMARK 470 GLU A 80 CG CD OE1 OE2 REMARK 470 ARG A 87 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 24 CG CD NE CZ NH1 NH2 REMARK 470 ILE B 25 CG1 CG2 CD1 REMARK 470 MET B 26 CG SD CE REMARK 470 GLN B 27 CG CD OE1 NE2 REMARK 470 ARG B 28 CG CD NE CZ NH1 NH2 REMARK 470 MET B 42 CG SD CE REMARK 470 VAL B 45 CG1 CG2 REMARK 470 HIS B 60 CG ND1 CD2 CE1 NE2 REMARK 470 GLU B 61 CG CD OE1 OE2 REMARK 470 ARG B 64 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 65 CG CD1 CD2 REMARK 470 GLU B 66 CG CD OE1 OE2 REMARK 470 SER B 68 OG REMARK 470 ARG B 73 CG CD NE CZ NH1 NH2 REMARK 470 MET B 76 CG SD CE REMARK 470 ARG B 84 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 88 CG CD CE NZ REMARK 470 LYS B 91 CG CD CE NZ REMARK 470 GLU B 101 CG CD OE1 OE2 REMARK 470 GLN B 110 CG CD OE1 NE2 REMARK 470 LYS B 112 CG CD CE NZ REMARK 470 PHE B 116 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS B 117 CG CD CE NZ REMARK 470 THR B 118 OG1 CG2 REMARK 470 LEU B 119 CG CD1 CD2 REMARK 470 GLU B 122 CG CD OE1 OE2 REMARK 470 THR B 127 OG1 CG2 REMARK 470 LYS B 131 CG CD CE NZ REMARK 470 ILE B 140 CG1 CG2 CD1 REMARK 470 LYS B 145 CG CD CE NZ REMARK 470 TYR B 161 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG B 170 CG CD NE CZ NH1 NH2 REMARK 470 ILE B 171 CG1 CG2 CD1 REMARK 470 ASP B 175 CG OD1 OD2 REMARK 470 TYR B 176 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU B 177 CG CD OE1 OE2 REMARK 470 ASP B 181 CG OD1 OD2 REMARK 470 ARG B 236 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 254 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 514 CG CD OE1 OE2 REMARK 470 LYS B 531 CG CD CE NZ REMARK 470 ARG B 568 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 589 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER A 71 O LYS B 112 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 68 -162.37 -109.30 REMARK 500 THR B 62 -160.61 -76.47 REMARK 500 GLU B 66 136.99 -175.55 REMARK 500 SER B 68 -45.06 -143.06 REMARK 500 LYS B 88 25.11 -161.19 REMARK 500 LYS B 91 2.85 59.40 REMARK 500 VAL B 109 -163.91 -124.90 REMARK 500 GLU B 177 -152.55 -133.41 REMARK 500 ILE B 256 -160.18 -102.81 REMARK 500 PRO B 319 -0.86 -58.20 REMARK 500 ARG B 342 -162.79 -128.62 REMARK 500 ASN B 345 -71.89 -88.80 REMARK 500 ARG B 463 -33.31 -134.09 REMARK 500 PRO B 501 102.98 -54.88 REMARK 500 PRO B 506 99.62 -68.59 REMARK 500 PRO B 511 1.94 -64.10 REMARK 500 THR B 565 50.58 -105.22 REMARK 500 TYR B 601 21.79 -141.52 REMARK 500 REMARK 500 REMARK: NULL DBREF 5YVY A 49 95 UNP F8J1V3 F8J1V3_9FLAV 1393 1439 DBREF 5YVY B 1 618 UNP F8TEL4 F8TEL4_9FLAV 1475 2092 SEQADV 5YVY VAL A 96 UNP F8J1V3 EXPRESSION TAG SEQADV 5YVY LYS A 97 UNP F8J1V3 EXPRESSION TAG SEQADV 5YVY THR A 98 UNP F8J1V3 EXPRESSION TAG SEQADV 5YVY GLN A 99 UNP F8J1V3 EXPRESSION TAG SEQADV 5YVY ARG A 100 UNP F8J1V3 EXPRESSION TAG SEQADV 5YVY SER B 30 UNP F8TEL4 LEU 1504 ENGINEERED MUTATION SEQADV 5YVY SER B 31 UNP F8TEL4 PHE 1505 ENGINEERED MUTATION SEQRES 1 A 52 ALA ASP LEU SER LEU GLU LYS ALA ALA ASN VAL GLN TRP SEQRES 2 A 52 ASP GLU MET ALA ASP ILE THR GLY SER SER PRO ILE ILE SEQRES 3 A 52 GLU VAL LYS GLN ASP GLU ASP GLY SER PHE SER ILE ARG SEQRES 4 A 52 ASP VAL GLU GLU THR ASN MET ILE VAL LYS THR GLN ARG SEQRES 1 B 618 SER GLY ALA LEU TRP ASP VAL PRO SER PRO ALA ALA THR SEQRES 2 B 618 GLN LYS ALA THR LEU SER GLU GLY VAL TYR ARG ILE MET SEQRES 3 B 618 GLN ARG GLY SER SER GLY LYS THR GLN VAL GLY VAL GLY SEQRES 4 B 618 ILE HIS MET GLU GLY VAL PHE HIS THR MET TRP HIS VAL SEQRES 5 B 618 THR ARG GLY SER VAL ILE CYS HIS GLU THR GLY ARG LEU SEQRES 6 B 618 GLU PRO SER TRP ALA ASP VAL ARG ASN ASP MET ILE SER SEQRES 7 B 618 TYR GLY GLY GLY TRP ARG LEU GLY ASP LYS TRP ASP LYS SEQRES 8 B 618 GLU GLU ASP VAL GLN VAL LEU ALA ILE GLU PRO GLY LYS SEQRES 9 B 618 ASN PRO LYS HIS VAL GLN THR LYS PRO GLY LEU PHE LYS SEQRES 10 B 618 THR LEU THR GLY GLU ILE GLY ALA VAL THR LEU ASP PHE SEQRES 11 B 618 LYS PRO GLY THR SER GLY SER PRO ILE ILE ASN LYS LYS SEQRES 12 B 618 GLY LYS VAL ILE GLY LEU TYR GLY ASN GLY VAL VAL THR SEQRES 13 B 618 LYS SER GLY ASP TYR VAL SER ALA ILE THR GLN ALA GLU SEQRES 14 B 618 ARG ILE GLY GLU PRO ASP TYR GLU VAL ASP GLU ASP ILE SEQRES 15 B 618 PHE ARG LYS LYS ARG LEU THR ILE MET ASP LEU HIS PRO SEQRES 16 B 618 GLY ALA GLY LYS THR LYS ARG ILE LEU PRO SER ILE VAL SEQRES 17 B 618 ARG GLU ALA LEU LYS ARG ARG LEU ARG THR LEU ILE LEU SEQRES 18 B 618 ALA PRO THR ARG VAL VAL ALA ALA GLU MET GLU GLU ALA SEQRES 19 B 618 LEU ARG GLY LEU PRO ILE ARG TYR GLN THR PRO ALA VAL SEQRES 20 B 618 LYS SER GLU HIS THR GLY ARG GLU ILE VAL ASP LEU MET SEQRES 21 B 618 CYS HIS ALA THR PHE THR THR ARG LEU LEU SER SER THR SEQRES 22 B 618 ARG VAL PRO ASN TYR ASN LEU ILE VAL MET ASP GLU ALA SEQRES 23 B 618 HIS PHE THR ASP PRO CYS SER VAL ALA ALA ARG GLY TYR SEQRES 24 B 618 ILE SER THR ARG VAL GLU MET GLY GLU ALA ALA ALA ILE SEQRES 25 B 618 PHE MET THR ALA THR PRO PRO GLY SER ILE ASP PRO PHE SEQRES 26 B 618 PRO GLN SER ASN SER PRO ILE GLU ASP ILE GLU ARG GLU SEQRES 27 B 618 ILE PRO GLU ARG SER TRP ASN THR GLY PHE ASP TRP ILE SEQRES 28 B 618 THR ASP TYR GLN GLY LYS THR VAL TRP PHE VAL PRO SER SEQRES 29 B 618 ILE LYS ALA GLY ASN ASP ILE ALA ASN CYS LEU ARG LYS SEQRES 30 B 618 SER GLY LYS LYS VAL ILE GLN LEU SER ARG LYS THR PHE SEQRES 31 B 618 ASP THR GLU TYR PRO LYS THR LYS LEU THR ASP TRP ASP SEQRES 32 B 618 PHE VAL VAL THR THR ASP ILE SER GLU MET GLY ALA ASN SEQRES 33 B 618 PHE ARG ALA GLY ARG VAL ILE ASP PRO ARG ARG CYS LEU SEQRES 34 B 618 LYS PRO VAL ILE LEU THR ASP GLY PRO GLU ARG VAL ILE SEQRES 35 B 618 LEU ALA GLY PRO ILE PRO VAL THR PRO ALA SER ALA ALA SEQRES 36 B 618 GLN ARG ARG GLY ARG ILE GLY ARG ASN PRO ALA GLN GLU SEQRES 37 B 618 ASP ASP GLN TYR VAL PHE SER GLY ASP PRO LEU LYS ASN SEQRES 38 B 618 ASP GLU ASP HIS ALA HIS TRP THR GLU ALA LYS MET LEU SEQRES 39 B 618 LEU ASP ASN ILE TYR THR PRO GLU GLY ILE ILE PRO THR SEQRES 40 B 618 LEU PHE GLY PRO GLU ARG GLU LYS THR GLN ALA ILE ASP SEQRES 41 B 618 GLY GLU PHE ARG LEU ARG GLY GLU GLN ARG LYS THR PHE SEQRES 42 B 618 VAL GLU LEU MET ARG ARG GLY ASP LEU PRO VAL TRP LEU SEQRES 43 B 618 SER TYR LYS VAL ALA SER ALA GLY ILE SER TYR LYS ASP SEQRES 44 B 618 ARG GLU TRP CYS PHE THR GLY GLU ARG ASN ASN GLN ILE SEQRES 45 B 618 LEU GLU GLU ASN MET GLU VAL GLU ILE TRP THR ARG GLU SEQRES 46 B 618 GLY GLU LYS LYS LYS LEU ARG PRO LYS TRP LEU ASP ALA SEQRES 47 B 618 ARG VAL TYR ALA ASP PRO MET ALA LEU LYS ASP PHE LYS SEQRES 48 B 618 GLU PHE ALA SER GLY ARG LYS HELIX 1 AA1 ARG B 202 ARG B 214 1 13 HELIX 2 AA2 THR B 224 LEU B 235 1 12 HELIX 3 AA3 HIS B 262 SER B 272 1 11 HELIX 4 AA4 ASP B 290 MET B 306 1 17 HELIX 5 AA5 PHE B 348 TYR B 354 1 7 HELIX 6 AA6 SER B 364 LYS B 377 1 14 HELIX 7 AA7 THR B 389 TYR B 394 1 6 HELIX 8 AA8 PRO B 395 THR B 400 1 6 HELIX 9 AA9 ASP B 409 MET B 413 5 5 HELIX 10 AB1 THR B 450 GLY B 459 1 10 HELIX 11 AB2 HIS B 485 ASP B 496 1 12 HELIX 12 AB3 PHE B 509 THR B 516 5 8 HELIX 13 AB4 GLY B 527 ARG B 539 1 13 HELIX 14 AB5 PRO B 543 SER B 552 1 10 HELIX 15 AB6 ARG B 560 PHE B 564 5 5 HELIX 16 AB7 GLU B 567 GLN B 571 5 5 HELIX 17 AB8 ASP B 597 TYR B 601 5 5 HELIX 18 AB9 ASP B 603 SER B 615 1 13 SHEET 1 AA1 2 ASP A 66 ILE A 67 0 SHEET 2 AA1 2 VAL B 109 GLN B 110 1 N GLN B 110 O ASP A 66 SHEET 1 AA2 5 ILE A 74 GLU A 75 0 SHEET 2 AA2 5 GLY B 114 LYS B 117 1 O LYS B 117 N ILE A 74 SHEET 3 AA2 5 GLU B 122 VAL B 126 -1 O ALA B 125 N GLY B 114 SHEET 4 AA2 5 TYR B 161 ALA B 164 -1 O SER B 163 N VAL B 126 SHEET 5 AA2 5 GLY B 153 VAL B 155 -1 N VAL B 154 O VAL B 162 SHEET 1 AA3 4 ILE B 40 MET B 42 0 SHEET 2 AA3 4 VAL B 45 MET B 49 -1 O HIS B 47 N ILE B 40 SHEET 3 AA3 4 MET B 76 TYR B 79 -1 O ILE B 77 N THR B 48 SHEET 4 AA3 4 PRO B 67 ASP B 71 -1 N TRP B 69 O SER B 78 SHEET 1 AA4 3 GLN B 96 VAL B 97 0 SHEET 2 AA4 3 SER B 137 ILE B 140 -1 O ILE B 140 N GLN B 96 SHEET 3 AA4 3 LEU B 149 TYR B 150 -1 O TYR B 150 N SER B 137 SHEET 1 AA5 6 ARG B 187 MET B 191 0 SHEET 2 AA5 6 ALA B 310 MET B 314 1 O PHE B 313 N MET B 191 SHEET 3 AA5 6 LEU B 280 ASP B 284 1 N MET B 283 O MET B 314 SHEET 4 AA5 6 THR B 218 ALA B 222 1 N LEU B 219 O VAL B 282 SHEET 5 AA5 6 VAL B 257 CYS B 261 1 O ASP B 258 N ILE B 220 SHEET 6 AA5 6 ILE B 240 TYR B 242 1 N ARG B 241 O VAL B 257 SHEET 1 AA6 6 ILE B 332 GLU B 336 0 SHEET 2 AA6 6 ASP B 470 PHE B 474 1 O ASP B 470 N GLU B 333 SHEET 3 AA6 6 ARG B 421 ASP B 424 1 N ASP B 424 O VAL B 473 SHEET 4 AA6 6 THR B 358 PHE B 361 1 N VAL B 359 O ILE B 423 SHEET 5 AA6 6 PHE B 404 THR B 407 1 O VAL B 405 N TRP B 360 SHEET 6 AA6 6 VAL B 382 LEU B 385 1 N LEU B 385 O VAL B 406 SHEET 1 AA7 2 ARG B 427 LEU B 434 0 SHEET 2 AA7 2 ARG B 440 PRO B 448 -1 O ALA B 444 N LYS B 430 SHEET 1 AA8 2 GLU B 580 TRP B 582 0 SHEET 2 AA8 2 LYS B 588 LYS B 590 -1 O LYS B 589 N ILE B 581 CISPEP 1 PRO B 195 GLY B 196 0 -1.26 CISPEP 2 GLY B 445 PRO B 446 0 -1.20 CISPEP 3 GLU B 502 GLY B 503 0 -10.50 CRYST1 52.900 88.770 81.450 90.00 93.85 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018904 0.000000 0.001272 0.00000 SCALE2 0.000000 0.011265 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012305 0.00000