HEADER VIRAL PROTEIN 28-NOV-17 5YW1 TITLE CRYSTAL STRUCTURE OF FULL LENGTH NS3 PROTEIN (ED4NS2BNS3) IN COMPLEX TITLE 2 WITH BOVINE PANCREATIC TRYPSIN INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEPTIDASE S7; COMPND 3 CHAIN: B; COMPND 4 FRAGMENT: UNP RESIDUES 1475-2092; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: FLAVIVIRUS_NS2B; COMPND 8 CHAIN: A; COMPND 9 FRAGMENT: UNP RESIDUES 1393-1439; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: PTI PROTEIN; COMPND 13 CHAIN: I; COMPND 14 FRAGMENT: UNP RESIDUES 36-90; COMPND 15 SYNONYM: PANCREATIC TRYPSIN INHIBITOR; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DENGUE VIRUS 4; SOURCE 3 ORGANISM_TAXID: 11070; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: DENGUE VIRUS 4; SOURCE 8 ORGANISM_TAXID: 11070; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 11 MOL_ID: 3; SOURCE 12 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 13 ORGANISM_COMMON: BOVINE; SOURCE 14 ORGANISM_TAXID: 9913; SOURCE 15 GENE: PTI; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SERINE PROTEASE, NON-STRUCTURAL PROTEIN 3, DEAH HELICASE, ATPASE, KEYWDS 2 DENGUE VIRUS, FLAVIVIRUS, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR W.W.PHOO,A.EL SAHILI REVDAT 3 16-OCT-24 5YW1 1 REMARK REVDAT 2 22-NOV-23 5YW1 1 REMARK REVDAT 1 02-JAN-19 5YW1 0 JRNL AUTH W.W.PHOO,A.E.SAHILI,Z.Z.ZHANG,M.W.CHEN,J.LESCAR,S.VASUDEVAN, JRNL AUTH 2 D.LUO JRNL TITL CRYSTAL STRUCTURES OF UNLINKED FULL LENGTH NS3 FROM DENGUE JRNL TITL 2 VIRUS PROVIDE INSIGHTS INTO DYNAMICS OF PROTEASE DOMAIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.14_3260: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 24103 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.222 REMARK 3 R VALUE (WORKING SET) : 0.221 REMARK 3 FREE R VALUE : 0.240 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.870 REMARK 3 FREE R VALUE TEST SET COUNT : 1175 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.0045 - 5.1977 0.99 2915 153 0.1888 0.2065 REMARK 3 2 5.1977 - 4.1265 1.00 2850 159 0.1789 0.1979 REMARK 3 3 4.1265 - 3.6051 1.00 2876 146 0.2077 0.2387 REMARK 3 4 3.6051 - 3.2756 1.00 2862 151 0.2349 0.2867 REMARK 3 5 3.2756 - 3.0409 1.00 2888 127 0.2752 0.2721 REMARK 3 6 3.0409 - 2.8616 1.00 2833 153 0.2813 0.3086 REMARK 3 7 2.8616 - 2.7183 0.99 2859 145 0.2966 0.2898 REMARK 3 8 2.7183 - 2.6000 1.00 2845 141 0.3329 0.3496 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.390 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.870 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 54.01 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 5395 REMARK 3 ANGLE : 0.684 7327 REMARK 3 CHIRALITY : 0.046 808 REMARK 3 PLANARITY : 0.005 959 REMARK 3 DIHEDRAL : 16.074 3253 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 4 THROUGH 163 ) REMARK 3 ORIGIN FOR THE GROUP (A): 63.3057 -1.0800 51.8750 REMARK 3 T TENSOR REMARK 3 T11: 0.6724 T22: 1.1936 REMARK 3 T33: 0.5272 T12: 0.0083 REMARK 3 T13: 0.0169 T23: 0.1257 REMARK 3 L TENSOR REMARK 3 L11: 1.9339 L22: 2.1043 REMARK 3 L33: 3.7134 L12: 0.2839 REMARK 3 L13: -0.5997 L23: -1.9620 REMARK 3 S TENSOR REMARK 3 S11: -0.0371 S12: 0.4578 S13: -0.1145 REMARK 3 S21: 0.0577 S22: 0.2304 S23: -0.0952 REMARK 3 S31: -0.4841 S32: -1.8408 S33: -0.1418 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 164 THROUGH 429 ) REMARK 3 ORIGIN FOR THE GROUP (A): 52.4088 4.2163 17.1485 REMARK 3 T TENSOR REMARK 3 T11: 0.3595 T22: 0.3576 REMARK 3 T33: 0.4033 T12: -0.0478 REMARK 3 T13: -0.0122 T23: 0.0591 REMARK 3 L TENSOR REMARK 3 L11: 2.2973 L22: 1.2587 REMARK 3 L33: 0.9734 L12: -0.7743 REMARK 3 L13: 0.0478 L23: 0.7379 REMARK 3 S TENSOR REMARK 3 S11: 0.0888 S12: -0.2877 S13: -0.3385 REMARK 3 S21: 0.1441 S22: -0.0599 S23: 0.0498 REMARK 3 S31: 0.1011 S32: -0.1138 S33: -0.0452 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 430 THROUGH 618 ) REMARK 3 ORIGIN FOR THE GROUP (A): 48.4080 1.0281 -3.8818 REMARK 3 T TENSOR REMARK 3 T11: 0.3824 T22: 0.3098 REMARK 3 T33: 0.3757 T12: 0.0472 REMARK 3 T13: -0.0045 T23: 0.0158 REMARK 3 L TENSOR REMARK 3 L11: 1.2226 L22: 2.3670 REMARK 3 L33: 2.1694 L12: 0.0526 REMARK 3 L13: 0.4093 L23: 1.3681 REMARK 3 S TENSOR REMARK 3 S11: 0.1314 S12: 0.0410 S13: -0.2169 REMARK 3 S21: -0.4524 S22: -0.2654 S23: 0.2761 REMARK 3 S31: -0.1946 S32: -0.2329 S33: 0.0969 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 50 THROUGH 54 ) REMARK 3 ORIGIN FOR THE GROUP (A): 64.2817 -13.4469 42.8208 REMARK 3 T TENSOR REMARK 3 T11: 0.9099 T22: 1.2179 REMARK 3 T33: 0.8788 T12: -0.4769 REMARK 3 T13: 0.0682 T23: -0.1053 REMARK 3 L TENSOR REMARK 3 L11: 0.0068 L22: 0.0618 REMARK 3 L33: 0.0796 L12: -0.0026 REMARK 3 L13: 0.0144 L23: -0.0621 REMARK 3 S TENSOR REMARK 3 S11: 0.3235 S12: 0.4569 S13: 0.2900 REMARK 3 S21: -0.2562 S22: 0.0245 S23: 0.1879 REMARK 3 S31: -0.0464 S32: -0.2285 S33: -0.3332 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 55 THROUGH 59 ) REMARK 3 ORIGIN FOR THE GROUP (A): 55.9377 -11.1245 55.6850 REMARK 3 T TENSOR REMARK 3 T11: 0.8568 T22: 1.6165 REMARK 3 T33: 0.9039 T12: -0.4509 REMARK 3 T13: -0.0733 T23: 0.0303 REMARK 3 L TENSOR REMARK 3 L11: 1.7256 L22: 4.2612 REMARK 3 L33: 1.4637 L12: 1.5168 REMARK 3 L13: 0.9284 L23: -0.8665 REMARK 3 S TENSOR REMARK 3 S11: -0.5885 S12: -0.1580 S13: -0.2102 REMARK 3 S21: 0.0573 S22: -0.3191 S23: 0.3390 REMARK 3 S31: 0.3071 S32: -0.4851 S33: 0.3640 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 60 THROUGH 64 ) REMARK 3 ORIGIN FOR THE GROUP (A): 55.2136 -6.3046 67.9539 REMARK 3 T TENSOR REMARK 3 T11: 1.3260 T22: 1.2975 REMARK 3 T33: 1.0536 T12: -0.0694 REMARK 3 T13: -0.0125 T23: 0.1094 REMARK 3 L TENSOR REMARK 3 L11: 1.5630 L22: 0.1172 REMARK 3 L33: 1.0280 L12: 0.0082 REMARK 3 L13: -1.2239 L23: 0.0798 REMARK 3 S TENSOR REMARK 3 S11: 0.0066 S12: -0.0067 S13: -0.2192 REMARK 3 S21: -0.1309 S22: -0.2280 S23: -0.0716 REMARK 3 S31: 0.5453 S32: 0.2376 S33: 0.1613 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 65 THROUGH 74 ) REMARK 3 ORIGIN FOR THE GROUP (A): 68.3047 3.8969 68.6725 REMARK 3 T TENSOR REMARK 3 T11: 1.1645 T22: 1.1256 REMARK 3 T33: 0.6492 T12: -0.1279 REMARK 3 T13: 0.0507 T23: -0.0022 REMARK 3 L TENSOR REMARK 3 L11: 2.0938 L22: 2.1747 REMARK 3 L33: 3.0646 L12: -0.2972 REMARK 3 L13: -0.6081 L23: -0.9952 REMARK 3 S TENSOR REMARK 3 S11: 0.4245 S12: 0.0383 S13: -0.1075 REMARK 3 S21: 0.0803 S22: 0.0947 S23: -0.0890 REMARK 3 S31: -0.1649 S32: -0.1988 S33: -0.1865 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 75 THROUGH 86 ) REMARK 3 ORIGIN FOR THE GROUP (A): 73.9871 12.4517 50.9158 REMARK 3 T TENSOR REMARK 3 T11: 1.4475 T22: 0.8523 REMARK 3 T33: 0.6085 T12: -0.0545 REMARK 3 T13: 0.2955 T23: 0.2105 REMARK 3 L TENSOR REMARK 3 L11: 5.0078 L22: 2.2504 REMARK 3 L33: 0.2919 L12: -0.4264 REMARK 3 L13: 0.1725 L23: -0.7064 REMARK 3 S TENSOR REMARK 3 S11: -0.0459 S12: -0.0898 S13: -0.2957 REMARK 3 S21: -0.1181 S22: 0.0107 S23: -0.5009 REMARK 3 S31: 0.1081 S32: 0.8064 S33: 0.0051 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'I' AND (RESID 1 THROUGH 17 ) REMARK 3 ORIGIN FOR THE GROUP (A): 86.5766 -0.2532 47.0147 REMARK 3 T TENSOR REMARK 3 T11: 0.8493 T22: 1.3349 REMARK 3 T33: 0.7749 T12: -0.2404 REMARK 3 T13: -0.0619 T23: 0.5286 REMARK 3 L TENSOR REMARK 3 L11: 0.7124 L22: 0.9531 REMARK 3 L33: 2.1610 L12: -0.5019 REMARK 3 L13: -1.1038 L23: 0.6523 REMARK 3 S TENSOR REMARK 3 S11: -0.0826 S12: -0.1697 S13: 0.3676 REMARK 3 S21: 0.4653 S22: -0.4492 S23: -0.1524 REMARK 3 S31: -0.4556 S32: 1.0770 S33: 0.3158 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'I' AND (RESID 18 THROUGH 31 ) REMARK 3 ORIGIN FOR THE GROUP (A): 89.2384 -8.0969 44.1449 REMARK 3 T TENSOR REMARK 3 T11: 0.7405 T22: 1.4115 REMARK 3 T33: 0.7440 T12: -0.2953 REMARK 3 T13: 0.3584 T23: 0.4532 REMARK 3 L TENSOR REMARK 3 L11: 0.5305 L22: 1.0037 REMARK 3 L33: 1.4174 L12: -0.1865 REMARK 3 L13: -0.7050 L23: 0.9280 REMARK 3 S TENSOR REMARK 3 S11: -0.6036 S12: 0.4715 S13: -0.1165 REMARK 3 S21: -0.2444 S22: -0.4989 S23: -0.5799 REMARK 3 S31: 0.7820 S32: 0.4601 S33: -0.2144 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'I' AND (RESID 32 THROUGH 55 ) REMARK 3 ORIGIN FOR THE GROUP (A): 85.2994 -3.5548 40.9650 REMARK 3 T TENSOR REMARK 3 T11: 0.7612 T22: 1.1363 REMARK 3 T33: 0.8095 T12: -0.0202 REMARK 3 T13: 0.2036 T23: 0.2798 REMARK 3 L TENSOR REMARK 3 L11: 2.6940 L22: 1.2864 REMARK 3 L33: 1.9261 L12: 0.7766 REMARK 3 L13: -0.1447 L23: -1.0157 REMARK 3 S TENSOR REMARK 3 S11: -0.0824 S12: 0.3577 S13: -0.5167 REMARK 3 S21: -0.7141 S22: -0.4104 S23: -0.6333 REMARK 3 S31: -0.1149 S32: 0.6083 S33: 0.4137 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5YW1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-DEC-17. REMARK 100 THE DEPOSITION ID IS D_1300005993. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-NOV-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0-7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24153 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 45.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.08200 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.73 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.80300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2VBC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M MES PH 6.0, 12% PEG4000, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 43.74650 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4800 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31560 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -31.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A, I REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER B 1 REMARK 465 GLY B 2 REMARK 465 ALA B 3 REMARK 465 PRO B 10 REMARK 465 ALA B 11 REMARK 465 ALA B 12 REMARK 465 THR B 13 REMARK 465 GLN B 14 REMARK 465 LYS B 15 REMARK 465 ALA B 16 REMARK 465 LEU B 30 REMARK 465 PHE B 31 REMARK 465 GLY B 32 REMARK 465 ILE B 171 REMARK 465 GLY B 172 REMARK 465 GLU B 173 REMARK 465 PRO B 174 REMARK 465 GLY A 48 REMARK 465 ALA A 49 REMARK 465 ARG A 87 REMARK 465 ASP A 88 REMARK 465 VAL A 89 REMARK 465 GLU A 90 REMARK 465 GLU A 91 REMARK 465 THR A 92 REMARK 465 ASN A 93 REMARK 465 MET A 94 REMARK 465 ILE A 95 REMARK 465 GLY A 96 REMARK 465 VAL A 97 REMARK 465 LYS A 98 REMARK 465 THR A 99 REMARK 465 GLN A 100 REMARK 465 ARG A 101 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU B 4 CG CD1 CD2 REMARK 470 TRP B 5 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP B 5 CZ3 CH2 REMARK 470 VAL B 7 CG1 CG2 REMARK 470 THR B 17 OG1 CG2 REMARK 470 LEU B 18 CG CD1 CD2 REMARK 470 ARG B 28 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 33 CG CD CE NZ REMARK 470 MET B 42 CG SD CE REMARK 470 HIS B 60 CG ND1 CD2 CE1 NE2 REMARK 470 GLU B 61 CG CD OE1 OE2 REMARK 470 THR B 62 OG1 CG2 REMARK 470 ARG B 64 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 65 CG CD1 CD2 REMARK 470 GLU B 66 CG CD OE1 OE2 REMARK 470 ARG B 73 CG CD NE CZ NH1 NH2 REMARK 470 ASN B 74 CG OD1 ND2 REMARK 470 ARG B 84 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 88 CG CD CE NZ REMARK 470 LYS B 91 CG CD CE NZ REMARK 470 GLU B 92 CG CD OE1 OE2 REMARK 470 ASN B 105 CG OD1 ND2 REMARK 470 LYS B 112 CG CD CE NZ REMARK 470 LEU B 115 CG CD1 CD2 REMARK 470 LYS B 117 CG CD CE NZ REMARK 470 THR B 118 OG1 CG2 REMARK 470 LEU B 119 CG CD1 CD2 REMARK 470 THR B 120 OG1 CG2 REMARK 470 GLU B 122 CG CD OE1 OE2 REMARK 470 SER B 135 OG REMARK 470 LYS B 145 CG CD CE NZ REMARK 470 ARG B 170 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 184 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 202 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 213 CG CD CE NZ REMARK 470 GLU B 233 CG CD OE1 OE2 REMARK 470 LYS B 377 CG CD CE NZ REMARK 470 GLU B 468 CG CD OE1 OE2 REMARK 470 LYS B 480 CG CD CE NZ REMARK 470 ASN B 481 CG OD1 ND2 REMARK 470 TYR B 499 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ILE B 504 CG1 CG2 CD1 REMARK 470 LYS B 515 CG CD CE NZ REMARK 470 GLN B 517 CG CD OE1 NE2 REMARK 470 ARG B 526 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 50 CG OD1 OD2 REMARK 470 GLU A 54 CG CD OE1 OE2 REMARK 470 LYS A 55 CG CD CE NZ REMARK 470 ILE A 73 CG1 CG2 CD1 REMARK 470 GLU A 75 CG CD OE1 OE2 REMARK 470 LYS A 77 CG CD CE NZ REMARK 470 ASP A 79 CG OD1 OD2 REMARK 470 GLU A 80 CG CD OE1 OE2 REMARK 470 ASP A 81 CG OD1 OD2 REMARK 470 PHE I 22 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASN I 24 CG OD1 ND2 REMARK 470 LYS I 26 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASN B 497 NH1 ARG B 530 2.08 REMARK 500 O ASP I 50 OG1 THR I 54 2.17 REMARK 500 NE1 TRP B 89 O GLU B 93 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP B 5 -120.78 -113.64 REMARK 500 ASP B 6 72.14 -166.58 REMARK 500 LEU B 18 44.24 -163.59 REMARK 500 SER B 19 -171.07 -69.91 REMARK 500 GLU B 43 -124.07 60.54 REMARK 500 SER B 68 -73.21 -109.62 REMARK 500 GLU B 92 -52.08 -144.72 REMARK 500 LYS B 117 70.08 42.40 REMARK 500 LEU B 119 -17.50 74.62 REMARK 500 THR B 127 62.58 -101.15 REMARK 500 LYS B 199 -70.85 -62.00 REMARK 500 ARG B 202 -51.38 -136.33 REMARK 500 ALA B 286 6.46 -67.72 REMARK 500 PHE B 348 46.22 -140.82 REMARK 500 ARG B 418 75.33 -114.67 REMARK 500 ASP B 436 92.24 -62.83 REMARK 500 ILE B 504 -175.44 -67.39 REMARK 500 ALA A 56 -60.96 -129.81 REMARK 500 MET A 64 55.57 -96.89 REMARK 500 GLU A 80 -62.51 18.59 REMARK 500 PRO I 13 25.58 -79.19 REMARK 500 ARG I 39 71.31 29.15 REMARK 500 REMARK 500 REMARK: NULL DBREF 5YW1 B 1 618 UNP F8TEL4 F8TEL4_9FLAV 1475 2092 DBREF 5YW1 A 49 95 UNP W0LLP9 W0LLP9_9FLAV 1393 1439 DBREF 5YW1 I 1 55 UNP A6QPK7 A6QPK7_BOVIN 36 90 SEQADV 5YW1 GLY A 48 UNP W0LLP9 EXPRESSION TAG SEQADV 5YW1 GLY A 96 UNP W0LLP9 EXPRESSION TAG SEQADV 5YW1 VAL A 97 UNP W0LLP9 EXPRESSION TAG SEQADV 5YW1 LYS A 98 UNP W0LLP9 EXPRESSION TAG SEQADV 5YW1 THR A 99 UNP W0LLP9 EXPRESSION TAG SEQADV 5YW1 GLN A 100 UNP W0LLP9 EXPRESSION TAG SEQADV 5YW1 ARG A 101 UNP W0LLP9 EXPRESSION TAG SEQRES 1 B 618 SER GLY ALA LEU TRP ASP VAL PRO SER PRO ALA ALA THR SEQRES 2 B 618 GLN LYS ALA THR LEU SER GLU GLY VAL TYR ARG ILE MET SEQRES 3 B 618 GLN ARG GLY LEU PHE GLY LYS THR GLN VAL GLY VAL GLY SEQRES 4 B 618 ILE HIS MET GLU GLY VAL PHE HIS THR MET TRP HIS VAL SEQRES 5 B 618 THR ARG GLY SER VAL ILE CYS HIS GLU THR GLY ARG LEU SEQRES 6 B 618 GLU PRO SER TRP ALA ASP VAL ARG ASN ASP MET ILE SER SEQRES 7 B 618 TYR GLY GLY GLY TRP ARG LEU GLY ASP LYS TRP ASP LYS SEQRES 8 B 618 GLU GLU ASP VAL GLN VAL LEU ALA ILE GLU PRO GLY LYS SEQRES 9 B 618 ASN PRO LYS HIS VAL GLN THR LYS PRO GLY LEU PHE LYS SEQRES 10 B 618 THR LEU THR GLY GLU ILE GLY ALA VAL THR LEU ASP PHE SEQRES 11 B 618 LYS PRO GLY THR SER GLY SER PRO ILE ILE ASN LYS LYS SEQRES 12 B 618 GLY LYS VAL ILE GLY LEU TYR GLY ASN GLY VAL VAL THR SEQRES 13 B 618 LYS SER GLY ASP TYR VAL SER ALA ILE THR GLN ALA GLU SEQRES 14 B 618 ARG ILE GLY GLU PRO ASP TYR GLU VAL ASP GLU ASP ILE SEQRES 15 B 618 PHE ARG LYS LYS ARG LEU THR ILE MET ASP LEU HIS PRO SEQRES 16 B 618 GLY ALA GLY LYS THR LYS ARG ILE LEU PRO SER ILE VAL SEQRES 17 B 618 ARG GLU ALA LEU LYS ARG ARG LEU ARG THR LEU ILE LEU SEQRES 18 B 618 ALA PRO THR ARG VAL VAL ALA ALA GLU MET GLU GLU ALA SEQRES 19 B 618 LEU ARG GLY LEU PRO ILE ARG TYR GLN THR PRO ALA VAL SEQRES 20 B 618 LYS SER GLU HIS THR GLY ARG GLU ILE VAL ASP LEU MET SEQRES 21 B 618 CYS HIS ALA THR PHE THR THR ARG LEU LEU SER SER THR SEQRES 22 B 618 ARG VAL PRO ASN TYR ASN LEU ILE VAL MET ASP GLU ALA SEQRES 23 B 618 HIS PHE THR ASP PRO CYS SER VAL ALA ALA ARG GLY TYR SEQRES 24 B 618 ILE SER THR ARG VAL GLU MET GLY GLU ALA ALA ALA ILE SEQRES 25 B 618 PHE MET THR ALA THR PRO PRO GLY SER ILE ASP PRO PHE SEQRES 26 B 618 PRO GLN SER ASN SER PRO ILE GLU ASP ILE GLU ARG GLU SEQRES 27 B 618 ILE PRO GLU ARG SER TRP ASN THR GLY PHE ASP TRP ILE SEQRES 28 B 618 THR ASP TYR GLN GLY LYS THR VAL TRP PHE VAL PRO SER SEQRES 29 B 618 ILE LYS ALA GLY ASN ASP ILE ALA ASN CYS LEU ARG LYS SEQRES 30 B 618 SER GLY LYS LYS VAL ILE GLN LEU SER ARG LYS THR PHE SEQRES 31 B 618 ASP THR GLU TYR PRO LYS THR LYS LEU THR ASP TRP ASP SEQRES 32 B 618 PHE VAL VAL THR THR ASP ILE SER GLU MET GLY ALA ASN SEQRES 33 B 618 PHE ARG ALA GLY ARG VAL ILE ASP PRO ARG ARG CYS LEU SEQRES 34 B 618 LYS PRO VAL ILE LEU THR ASP GLY PRO GLU ARG VAL ILE SEQRES 35 B 618 LEU ALA GLY PRO ILE PRO VAL THR PRO ALA SER ALA ALA SEQRES 36 B 618 GLN ARG ARG GLY ARG ILE GLY ARG ASN PRO ALA GLN GLU SEQRES 37 B 618 ASP ASP GLN TYR VAL PHE SER GLY ASP PRO LEU LYS ASN SEQRES 38 B 618 ASP GLU ASP HIS ALA HIS TRP THR GLU ALA LYS MET LEU SEQRES 39 B 618 LEU ASP ASN ILE TYR THR PRO GLU GLY ILE ILE PRO THR SEQRES 40 B 618 LEU PHE GLY PRO GLU ARG GLU LYS THR GLN ALA ILE ASP SEQRES 41 B 618 GLY GLU PHE ARG LEU ARG GLY GLU GLN ARG LYS THR PHE SEQRES 42 B 618 VAL GLU LEU MET ARG ARG GLY ASP LEU PRO VAL TRP LEU SEQRES 43 B 618 SER TYR LYS VAL ALA SER ALA GLY ILE SER TYR LYS ASP SEQRES 44 B 618 ARG GLU TRP CYS PHE THR GLY GLU ARG ASN ASN GLN ILE SEQRES 45 B 618 LEU GLU GLU ASN MET GLU VAL GLU ILE TRP THR ARG GLU SEQRES 46 B 618 GLY GLU LYS LYS LYS LEU ARG PRO LYS TRP LEU ASP ALA SEQRES 47 B 618 ARG VAL TYR ALA ASP PRO MET ALA LEU LYS ASP PHE LYS SEQRES 48 B 618 GLU PHE ALA SER GLY ARG LYS SEQRES 1 A 54 GLY ALA ASP LEU SER LEU GLU LYS ALA ALA ASN VAL GLN SEQRES 2 A 54 TRP ASP GLU MET ALA ASP ILE THR GLY SER SER PRO ILE SEQRES 3 A 54 ILE GLU VAL LYS GLN ASP GLU ASP GLY SER PHE SER ILE SEQRES 4 A 54 ARG ASP VAL GLU GLU THR ASN MET ILE GLY VAL LYS THR SEQRES 5 A 54 GLN ARG SEQRES 1 I 55 ARG PRO ASP PHE CYS LEU GLU PRO PRO TYR THR GLY PRO SEQRES 2 I 55 CYS LYS ALA ARG MET ILE ARG TYR PHE TYR ASN ALA LYS SEQRES 3 I 55 ALA GLY LEU CYS GLN PRO PHE VAL TYR GLY GLY CYS ARG SEQRES 4 I 55 ALA LYS ARG ASN ASN PHE LYS SER SER GLU ASP CYS MET SEQRES 5 I 55 ARG THR CYS FORMUL 4 HOH *2(H2 O) HELIX 1 AA1 MET B 49 ARG B 54 1 6 HELIX 2 AA2 VAL B 72 ASP B 75 5 4 HELIX 3 AA3 ASP B 179 ARG B 184 5 6 HELIX 4 AA4 ARG B 202 ARG B 214 1 13 HELIX 5 AA5 THR B 224 LEU B 235 1 12 HELIX 6 AA6 HIS B 262 SER B 272 1 11 HELIX 7 AA7 ASP B 290 MET B 306 1 17 HELIX 8 AA8 PHE B 348 TYR B 354 1 7 HELIX 9 AA9 SER B 364 SER B 378 1 15 HELIX 10 AB1 THR B 389 THR B 400 1 12 HELIX 11 AB2 ASP B 409 MET B 413 5 5 HELIX 12 AB3 THR B 450 GLY B 459 1 10 HELIX 13 AB4 HIS B 485 ASP B 496 1 12 HELIX 14 AB5 PHE B 509 GLU B 514 1 6 HELIX 15 AB6 GLY B 527 ARG B 539 1 13 HELIX 16 AB7 PRO B 543 ALA B 553 1 11 HELIX 17 AB8 ARG B 560 PHE B 564 5 5 HELIX 18 AB9 GLU B 567 GLN B 571 5 5 HELIX 19 AC1 ASP B 597 TYR B 601 5 5 HELIX 20 AC2 ASP B 603 SER B 615 1 13 HELIX 21 AC3 PRO I 2 LEU I 6 5 5 HELIX 22 AC4 SER I 47 CYS I 55 1 9 SHEET 1 AA1 6 PRO B 67 ASP B 71 0 SHEET 2 AA1 6 MET B 76 TYR B 79 -1 O MET B 76 N ASP B 71 SHEET 3 AA1 6 VAL B 45 THR B 48 -1 N THR B 48 O ILE B 77 SHEET 4 AA1 6 THR B 34 MET B 42 -1 N ILE B 40 O HIS B 47 SHEET 5 AA1 6 GLY B 21 GLN B 27 -1 N ILE B 25 O GLY B 37 SHEET 6 AA1 6 LYS A 55 ALA A 57 -1 O ALA A 57 N VAL B 22 SHEET 1 AA2 2 ILE B 58 HIS B 60 0 SHEET 2 AA2 2 GLY B 63 LEU B 65 -1 O LEU B 65 N ILE B 58 SHEET 1 AA3 5 VAL B 146 TYR B 150 0 SHEET 2 AA3 5 SER B 137 ILE B 140 -1 N SER B 137 O TYR B 150 SHEET 3 AA3 5 VAL B 95 ALA B 99 -1 N LEU B 98 O PRO B 138 SHEET 4 AA3 5 LYS B 107 THR B 111 -1 O VAL B 109 N VAL B 97 SHEET 5 AA3 5 ASP A 66 ILE A 67 1 O ASP A 66 N GLN B 110 SHEET 1 AA4 4 GLY B 114 LEU B 115 0 SHEET 2 AA4 4 GLY B 124 VAL B 126 -1 O ALA B 125 N GLY B 114 SHEET 3 AA4 4 TYR B 161 ALA B 164 -1 O SER B 163 N VAL B 126 SHEET 4 AA4 4 GLY B 153 VAL B 155 -1 N VAL B 154 O VAL B 162 SHEET 1 AA5 6 LEU B 188 MET B 191 0 SHEET 2 AA5 6 ALA B 310 MET B 314 1 O PHE B 313 N MET B 191 SHEET 3 AA5 6 LEU B 280 ASP B 284 1 N MET B 283 O ILE B 312 SHEET 4 AA5 6 THR B 218 ALA B 222 1 N LEU B 221 O ASP B 284 SHEET 5 AA5 6 VAL B 257 CYS B 261 1 O MET B 260 N ILE B 220 SHEET 6 AA5 6 ILE B 240 TYR B 242 1 N ARG B 241 O VAL B 257 SHEET 1 AA6 6 ILE B 332 GLU B 336 0 SHEET 2 AA6 6 ASP B 470 PHE B 474 1 O TYR B 472 N GLU B 333 SHEET 3 AA6 6 ARG B 421 ASP B 424 1 N ASP B 424 O VAL B 473 SHEET 4 AA6 6 THR B 358 PHE B 361 1 N PHE B 361 O ILE B 423 SHEET 5 AA6 6 PHE B 404 THR B 407 1 O THR B 407 N TRP B 360 SHEET 6 AA6 6 VAL B 382 LEU B 385 1 N ILE B 383 O PHE B 404 SHEET 1 AA7 2 ARG B 427 LEU B 434 0 SHEET 2 AA7 2 ARG B 440 PRO B 448 -1 O ILE B 442 N VAL B 432 SHEET 1 AA8 2 LEU B 573 GLU B 574 0 SHEET 2 AA8 2 MET B 577 GLU B 578 -1 O MET B 577 N GLU B 574 SHEET 1 AA9 2 GLU B 580 TRP B 582 0 SHEET 2 AA9 2 LYS B 588 LYS B 590 -1 O LYS B 589 N ILE B 581 SHEET 1 AB1 2 MET I 18 ASN I 24 0 SHEET 2 AB1 2 LEU I 29 TYR I 35 -1 O TYR I 35 N MET I 18 SSBOND 1 CYS I 5 CYS I 55 1555 1555 2.02 SSBOND 2 CYS I 14 CYS I 38 1555 1555 2.02 SSBOND 3 CYS I 30 CYS I 51 1555 1555 2.02 CISPEP 1 GLY B 445 PRO B 446 0 0.42 CRYST1 53.018 87.493 86.455 90.00 98.25 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018862 0.000000 0.002736 0.00000 SCALE2 0.000000 0.011429 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011688 0.00000