HEADER TRANSFERASE 28-NOV-17 5YW5 TITLE CRYSTAL STRUCTURE OF ADENINE PHOSPHORIBOSYLTRANSFERASE FROM TITLE 2 FRANCISELLA TULARENSIS IN COMPLEX WITH ADENINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADENINE PHOSPHORIBOSYLTRANSFERASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: APRT; COMPND 5 EC: 2.4.2.7; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: FRANCISELLA TULARENSIS; SOURCE 3 ORGANISM_TAXID: 263; SOURCE 4 GENE: APT; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_PLASMID: LIC-PET30A KEYWDS TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR G.C.PAVITHRA,U.A.RAMAGOPAL REVDAT 4 22-NOV-23 5YW5 1 REMARK REVDAT 3 04-JUL-18 5YW5 1 JRNL REVDAT 2 09-MAY-18 5YW5 1 JRNL REVDAT 1 03-JAN-18 5YW5 0 JRNL AUTH G.C.PAVITHRA,U.A.RAMAGOPAL JRNL TITL CRYSTAL STRUCTURES OF APRT FROM FRANCISELLA TULARENSIS - AN JRNL TITL 2 N-H···N HYDROGEN BOND IMPARTS ADENINE JRNL TITL 3 SPECIFICITY IN ADENINE PHOSPORIBOSYLTRANSFERASES. JRNL REF FEBS J. V. 285 2306 2018 JRNL REFN ISSN 1742-4658 JRNL PMID 29694705 JRNL DOI 10.1111/FEBS.14481 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.40 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 53991 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.232 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2774 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3886 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.42 REMARK 3 BIN R VALUE (WORKING SET) : 0.2360 REMARK 3 BIN FREE R VALUE SET COUNT : 174 REMARK 3 BIN FREE R VALUE : 0.2490 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5253 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 40 REMARK 3 SOLVENT ATOMS : 216 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.21 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.58000 REMARK 3 B22 (A**2) : 1.79000 REMARK 3 B33 (A**2) : -0.21000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.147 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.145 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.106 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.384 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.940 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5478 ; 0.026 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5417 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7429 ; 2.367 ; 2.008 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12553 ; 1.164 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 718 ; 6.918 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 203 ;34.471 ;24.926 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 968 ;16.387 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 25 ;16.443 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 872 ; 0.142 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6082 ; 0.012 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1043 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -2 A 201 REMARK 3 ORIGIN FOR THE GROUP (A): 12.9952 -3.4324 12.6352 REMARK 3 T TENSOR REMARK 3 T11: 0.0349 T22: 0.0519 REMARK 3 T33: 0.0117 T12: -0.0302 REMARK 3 T13: 0.0151 T23: -0.0180 REMARK 3 L TENSOR REMARK 3 L11: 0.2931 L22: 0.2201 REMARK 3 L33: 0.3530 L12: -0.1126 REMARK 3 L13: -0.2013 L23: -0.0933 REMARK 3 S TENSOR REMARK 3 S11: 0.0017 S12: 0.0236 S13: 0.0250 REMARK 3 S21: -0.0138 S22: 0.0021 S23: -0.0014 REMARK 3 S31: 0.0447 S32: -0.0763 S33: -0.0038 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B -2 B 201 REMARK 3 ORIGIN FOR THE GROUP (A): 15.6284 -2.5015 58.0115 REMARK 3 T TENSOR REMARK 3 T11: 0.0298 T22: 0.0388 REMARK 3 T33: 0.0310 T12: 0.0196 REMARK 3 T13: -0.0100 T23: -0.0308 REMARK 3 L TENSOR REMARK 3 L11: 0.3293 L22: 0.1570 REMARK 3 L33: 0.5423 L12: -0.0364 REMARK 3 L13: -0.1441 L23: 0.1625 REMARK 3 S TENSOR REMARK 3 S11: 0.0042 S12: 0.0153 S13: 0.0229 REMARK 3 S21: 0.0341 S22: 0.0742 S23: -0.0684 REMARK 3 S31: 0.0334 S32: 0.0547 S33: -0.0785 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 201 REMARK 3 ORIGIN FOR THE GROUP (A): -5.5510 1.4210 52.8950 REMARK 3 T TENSOR REMARK 3 T11: 0.0269 T22: 0.0303 REMARK 3 T33: 0.0219 T12: 0.0209 REMARK 3 T13: -0.0134 T23: -0.0077 REMARK 3 L TENSOR REMARK 3 L11: 0.4236 L22: 0.4607 REMARK 3 L33: 0.4438 L12: -0.2421 REMARK 3 L13: 0.0298 L23: 0.0877 REMARK 3 S TENSOR REMARK 3 S11: 0.0312 S12: 0.0502 S13: 0.0043 REMARK 3 S21: 0.0032 S22: -0.0252 S23: 0.0424 REMARK 3 S31: -0.0061 S32: -0.0691 S33: -0.0060 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 1 D 201 REMARK 3 ORIGIN FOR THE GROUP (A): 34.1800 1.2614 16.8094 REMARK 3 T TENSOR REMARK 3 T11: 0.0313 T22: 0.0308 REMARK 3 T33: 0.0270 T12: -0.0093 REMARK 3 T13: 0.0067 T23: 0.0011 REMARK 3 L TENSOR REMARK 3 L11: 0.5569 L22: 0.2343 REMARK 3 L33: 0.4726 L12: 0.0538 REMARK 3 L13: -0.1752 L23: -0.0403 REMARK 3 S TENSOR REMARK 3 S11: 0.0528 S12: -0.0952 S13: 0.0786 REMARK 3 S21: -0.0349 S22: -0.0468 S23: -0.0391 REMARK 3 S31: 0.0195 S32: 0.0690 S33: -0.0060 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 5YW5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 06-DEC-17. REMARK 100 THE DEPOSITION ID IS D_1300006018. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-MAY-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.075 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 56827 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 44.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 8.400 REMARK 200 R MERGE (I) : 0.12100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.80 REMARK 200 R MERGE FOR SHELL (I) : 0.79500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 5YW2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.65 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M SODIUM ACETATE, 0.1M TRIS PH 8.5, REMARK 280 30% PEG 4000, SOAKED WITH 5MM ADENINE, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.50750 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 85.99950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.60350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 85.99950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.50750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.60350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3410 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15120 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3380 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14780 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A -3 REMARK 465 ASP B -3 REMARK 465 TYR B 97 REMARK 465 ASP B 98 REMARK 465 LEU B 99 REMARK 465 GLU B 100 REMARK 465 TYR B 101 REMARK 465 GLY B 102 REMARK 465 SER B 103 REMARK 465 ASP C -3 REMARK 465 ASP C -2 REMARK 465 ASP C -1 REMARK 465 LYS C 0 REMARK 465 ASP D -3 REMARK 465 ASP D -2 REMARK 465 ASP D -1 REMARK 465 LYS D 0 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A -2 CG OD1 OD2 REMARK 470 LYS A 0 CG CD CE NZ REMARK 470 ASP B -2 CG OD1 OD2 REMARK 470 ARG B 63 NE CZ NH1 NH2 REMARK 470 LYS B 96 CD CE NZ REMARK 470 LYS C 18 NZ REMARK 470 TYR C 101 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 MET D 1 CG SD CE REMARK 470 GLN D 45 OE1 NE2 REMARK 470 LYS D 145 CE NZ REMARK 470 LYS D 174 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU C 41 CD GLU C 41 OE1 0.087 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 32 CB - CG - OD1 ANGL. DEV. = 5.6 DEGREES REMARK 500 ARG A 63 NE - CZ - NH1 ANGL. DEV. = 6.2 DEGREES REMARK 500 ARG A 63 NE - CZ - NH2 ANGL. DEV. = -5.5 DEGREES REMARK 500 ASP A 124 CB - CG - OD1 ANGL. DEV. = 6.5 DEGREES REMARK 500 ASP B 32 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ARG B 37 NE - CZ - NH1 ANGL. DEV. = -4.2 DEGREES REMARK 500 ARG B 37 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 ASP B 124 CB - CG - OD1 ANGL. DEV. = 5.9 DEGREES REMARK 500 ASP C 25 CB - CG - OD1 ANGL. DEV. = 6.8 DEGREES REMARK 500 ASP C 25 CB - CG - OD2 ANGL. DEV. = -7.5 DEGREES REMARK 500 LYS C 38 CD - CE - NZ ANGL. DEV. = -13.9 DEGREES REMARK 500 GLU C 73 OE1 - CD - OE2 ANGL. DEV. = 7.8 DEGREES REMARK 500 ASP C 124 CB - CG - OD1 ANGL. DEV. = 8.5 DEGREES REMARK 500 ARG D 37 NE - CZ - NH2 ANGL. DEV. = 4.5 DEGREES REMARK 500 ASP D 98 CB - CG - OD2 ANGL. DEV. = -5.5 DEGREES REMARK 500 ASP D 124 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 LEU D 125 CB - CG - CD2 ANGL. DEV. = -10.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 90 -164.56 -111.73 REMARK 500 ALA A 127 -102.39 -120.40 REMARK 500 GLN A 143 -3.25 85.51 REMARK 500 ALA B 127 -100.24 -114.19 REMARK 500 ALA C 127 -101.55 -115.51 REMARK 500 ASP D 15 34.47 72.42 REMARK 500 ALA D 127 -102.85 -112.67 REMARK 500 GLN D 143 -7.85 80.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADE A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADE B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADE C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADE D 201 DBREF1 5YW5 A 1 175 UNP A0A0E2ZLA9_FRATU DBREF2 5YW5 A A0A0E2ZLA9 1 175 DBREF1 5YW5 B 1 175 UNP A0A0E2ZLA9_FRATU DBREF2 5YW5 B A0A0E2ZLA9 1 175 DBREF1 5YW5 C 1 175 UNP A0A0E2ZLA9_FRATU DBREF2 5YW5 C A0A0E2ZLA9 1 175 DBREF1 5YW5 D 1 175 UNP A0A0E2ZLA9_FRATU DBREF2 5YW5 D A0A0E2ZLA9 1 175 SEQADV 5YW5 ASP A -3 UNP A0A0E2ZLA EXPRESSION TAG SEQADV 5YW5 ASP A -2 UNP A0A0E2ZLA EXPRESSION TAG SEQADV 5YW5 ASP A -1 UNP A0A0E2ZLA EXPRESSION TAG SEQADV 5YW5 LYS A 0 UNP A0A0E2ZLA EXPRESSION TAG SEQADV 5YW5 ASP B -3 UNP A0A0E2ZLA EXPRESSION TAG SEQADV 5YW5 ASP B -2 UNP A0A0E2ZLA EXPRESSION TAG SEQADV 5YW5 ASP B -1 UNP A0A0E2ZLA EXPRESSION TAG SEQADV 5YW5 LYS B 0 UNP A0A0E2ZLA EXPRESSION TAG SEQADV 5YW5 ASP C -3 UNP A0A0E2ZLA EXPRESSION TAG SEQADV 5YW5 ASP C -2 UNP A0A0E2ZLA EXPRESSION TAG SEQADV 5YW5 ASP C -1 UNP A0A0E2ZLA EXPRESSION TAG SEQADV 5YW5 LYS C 0 UNP A0A0E2ZLA EXPRESSION TAG SEQADV 5YW5 ASP D -3 UNP A0A0E2ZLA EXPRESSION TAG SEQADV 5YW5 ASP D -2 UNP A0A0E2ZLA EXPRESSION TAG SEQADV 5YW5 ASP D -1 UNP A0A0E2ZLA EXPRESSION TAG SEQADV 5YW5 LYS D 0 UNP A0A0E2ZLA EXPRESSION TAG SEQRES 1 A 179 ASP ASP ASP LYS MET ASN LEU ASP PHE ILE LYS SER LYS SEQRES 2 A 179 ILE ALA ALA VAL PRO ASP PHE PRO LYS PRO GLY ILE MET SEQRES 3 A 179 PHE ARG ASP ILE THR PRO LEU LEU ALA ASP PRO GLN GLY SEQRES 4 A 179 LEU ARG LYS THR ALA GLU ALA MET ALA GLN GLU LEU LYS SEQRES 5 A 179 ASN LYS GLY ILE GLN PRO THR ILE VAL ALA GLY THR GLU SEQRES 6 A 179 SER ARG GLY PHE ILE PHE GLY VAL ALA LEU ALA GLU VAL SEQRES 7 A 179 LEU GLY LEU GLY PHE VAL PRO VAL ARG LYS PRO GLY LYS SEQRES 8 A 179 LEU PRO ARG ALA THR TYR SER VAL LYS TYR ASP LEU GLU SEQRES 9 A 179 TYR GLY SER ASP SER LEU GLU ILE HIS GLN ASP ALA PHE SEQRES 10 A 179 LYS VAL THR ASP GLU VAL LEU VAL VAL ASP ASP LEU LEU SEQRES 11 A 179 ALA THR GLY GLY THR ALA LYS ALA THR VAL ASP LEU ILE SEQRES 12 A 179 GLU LYS THR GLN ALA LYS VAL ALA GLY LEU ILE PHE VAL SEQRES 13 A 179 MET GLU LEU ASP GLY LEU GLY GLY ARG GLU VAL LEU ALA SEQRES 14 A 179 GLY TYR ASN VAL SER ALA LEU ILE LYS PHE SEQRES 1 B 179 ASP ASP ASP LYS MET ASN LEU ASP PHE ILE LYS SER LYS SEQRES 2 B 179 ILE ALA ALA VAL PRO ASP PHE PRO LYS PRO GLY ILE MET SEQRES 3 B 179 PHE ARG ASP ILE THR PRO LEU LEU ALA ASP PRO GLN GLY SEQRES 4 B 179 LEU ARG LYS THR ALA GLU ALA MET ALA GLN GLU LEU LYS SEQRES 5 B 179 ASN LYS GLY ILE GLN PRO THR ILE VAL ALA GLY THR GLU SEQRES 6 B 179 SER ARG GLY PHE ILE PHE GLY VAL ALA LEU ALA GLU VAL SEQRES 7 B 179 LEU GLY LEU GLY PHE VAL PRO VAL ARG LYS PRO GLY LYS SEQRES 8 B 179 LEU PRO ARG ALA THR TYR SER VAL LYS TYR ASP LEU GLU SEQRES 9 B 179 TYR GLY SER ASP SER LEU GLU ILE HIS GLN ASP ALA PHE SEQRES 10 B 179 LYS VAL THR ASP GLU VAL LEU VAL VAL ASP ASP LEU LEU SEQRES 11 B 179 ALA THR GLY GLY THR ALA LYS ALA THR VAL ASP LEU ILE SEQRES 12 B 179 GLU LYS THR GLN ALA LYS VAL ALA GLY LEU ILE PHE VAL SEQRES 13 B 179 MET GLU LEU ASP GLY LEU GLY GLY ARG GLU VAL LEU ALA SEQRES 14 B 179 GLY TYR ASN VAL SER ALA LEU ILE LYS PHE SEQRES 1 C 179 ASP ASP ASP LYS MET ASN LEU ASP PHE ILE LYS SER LYS SEQRES 2 C 179 ILE ALA ALA VAL PRO ASP PHE PRO LYS PRO GLY ILE MET SEQRES 3 C 179 PHE ARG ASP ILE THR PRO LEU LEU ALA ASP PRO GLN GLY SEQRES 4 C 179 LEU ARG LYS THR ALA GLU ALA MET ALA GLN GLU LEU LYS SEQRES 5 C 179 ASN LYS GLY ILE GLN PRO THR ILE VAL ALA GLY THR GLU SEQRES 6 C 179 SER ARG GLY PHE ILE PHE GLY VAL ALA LEU ALA GLU VAL SEQRES 7 C 179 LEU GLY LEU GLY PHE VAL PRO VAL ARG LYS PRO GLY LYS SEQRES 8 C 179 LEU PRO ARG ALA THR TYR SER VAL LYS TYR ASP LEU GLU SEQRES 9 C 179 TYR GLY SER ASP SER LEU GLU ILE HIS GLN ASP ALA PHE SEQRES 10 C 179 LYS VAL THR ASP GLU VAL LEU VAL VAL ASP ASP LEU LEU SEQRES 11 C 179 ALA THR GLY GLY THR ALA LYS ALA THR VAL ASP LEU ILE SEQRES 12 C 179 GLU LYS THR GLN ALA LYS VAL ALA GLY LEU ILE PHE VAL SEQRES 13 C 179 MET GLU LEU ASP GLY LEU GLY GLY ARG GLU VAL LEU ALA SEQRES 14 C 179 GLY TYR ASN VAL SER ALA LEU ILE LYS PHE SEQRES 1 D 179 ASP ASP ASP LYS MET ASN LEU ASP PHE ILE LYS SER LYS SEQRES 2 D 179 ILE ALA ALA VAL PRO ASP PHE PRO LYS PRO GLY ILE MET SEQRES 3 D 179 PHE ARG ASP ILE THR PRO LEU LEU ALA ASP PRO GLN GLY SEQRES 4 D 179 LEU ARG LYS THR ALA GLU ALA MET ALA GLN GLU LEU LYS SEQRES 5 D 179 ASN LYS GLY ILE GLN PRO THR ILE VAL ALA GLY THR GLU SEQRES 6 D 179 SER ARG GLY PHE ILE PHE GLY VAL ALA LEU ALA GLU VAL SEQRES 7 D 179 LEU GLY LEU GLY PHE VAL PRO VAL ARG LYS PRO GLY LYS SEQRES 8 D 179 LEU PRO ARG ALA THR TYR SER VAL LYS TYR ASP LEU GLU SEQRES 9 D 179 TYR GLY SER ASP SER LEU GLU ILE HIS GLN ASP ALA PHE SEQRES 10 D 179 LYS VAL THR ASP GLU VAL LEU VAL VAL ASP ASP LEU LEU SEQRES 11 D 179 ALA THR GLY GLY THR ALA LYS ALA THR VAL ASP LEU ILE SEQRES 12 D 179 GLU LYS THR GLN ALA LYS VAL ALA GLY LEU ILE PHE VAL SEQRES 13 D 179 MET GLU LEU ASP GLY LEU GLY GLY ARG GLU VAL LEU ALA SEQRES 14 D 179 GLY TYR ASN VAL SER ALA LEU ILE LYS PHE HET ADE A 201 10 HET ADE B 201 10 HET ADE C 201 10 HET ADE D 201 10 HETNAM ADE ADENINE FORMUL 5 ADE 4(C5 H5 N5) FORMUL 9 HOH *216(H2 O) HELIX 1 AA1 ASP A -2 SER A 8 1 11 HELIX 2 AA2 ILE A 26 ASP A 32 1 7 HELIX 3 AA3 GLN A 34 LYS A 50 1 17 HELIX 4 AA4 SER A 62 GLY A 76 1 15 HELIX 5 AA5 GLY A 129 THR A 142 1 14 HELIX 6 AA6 GLY A 159 LEU A 164 1 6 HELIX 7 AA7 ASP B -1 LYS B 9 1 11 HELIX 8 AA8 ILE B 26 ASP B 32 1 7 HELIX 9 AA9 GLN B 34 LYS B 50 1 17 HELIX 10 AB1 SER B 62 GLY B 76 1 15 HELIX 11 AB2 GLY B 129 LYS B 141 1 13 HELIX 12 AB3 GLY B 159 LEU B 164 1 6 HELIX 13 AB4 ASN C 2 LYS C 9 1 8 HELIX 14 AB5 ILE C 26 ASP C 32 1 7 HELIX 15 AB6 GLN C 34 GLY C 51 1 18 HELIX 16 AB7 SER C 62 GLY C 76 1 15 HELIX 17 AB8 GLY C 129 LYS C 141 1 13 HELIX 18 AB9 GLY C 159 LEU C 164 1 6 HELIX 19 AC1 ASN D 2 LYS D 9 1 8 HELIX 20 AC2 ILE D 26 ASP D 32 1 7 HELIX 21 AC3 GLN D 34 LYS D 50 1 17 HELIX 22 AC4 SER D 62 GLY D 76 1 15 HELIX 23 AC5 GLY D 129 THR D 142 1 14 HELIX 24 AC6 GLY D 159 LEU D 164 1 6 SHEET 1 AA1 2 ALA A 11 VAL A 13 0 SHEET 2 AA1 2 PHE A 23 ASP A 25 -1 O ASP A 25 N ALA A 11 SHEET 1 AA2 5 GLY A 78 VAL A 82 0 SHEET 2 AA2 5 ILE A 56 THR A 60 1 N GLY A 59 O VAL A 80 SHEET 3 AA2 5 GLU A 118 LEU A 126 1 O LEU A 120 N ALA A 58 SHEET 4 AA2 5 LYS A 145 LEU A 155 1 O LYS A 145 N VAL A 119 SHEET 5 AA2 5 VAL A 169 PHE A 175 1 O PHE A 175 N GLU A 154 SHEET 1 AA3 2 THR A 92 ASP A 98 0 SHEET 2 AA3 2 SER A 103 HIS A 109 -1 O ASP A 104 N TYR A 97 SHEET 1 AA4 2 ALA B 11 VAL B 13 0 SHEET 2 AA4 2 PHE B 23 ASP B 25 -1 O PHE B 23 N VAL B 13 SHEET 1 AA5 5 PHE B 79 VAL B 82 0 SHEET 2 AA5 5 ILE B 56 THR B 60 1 N GLY B 59 O VAL B 82 SHEET 3 AA5 5 GLU B 118 LEU B 126 1 O LEU B 120 N ALA B 58 SHEET 4 AA5 5 LYS B 145 LEU B 155 1 O LEU B 155 N LEU B 126 SHEET 5 AA5 5 VAL B 169 PHE B 175 1 O PHE B 175 N GLU B 154 SHEET 1 AA6 2 THR B 92 VAL B 95 0 SHEET 2 AA6 2 LEU B 106 HIS B 109 -1 O ILE B 108 N TYR B 93 SHEET 1 AA7 2 ALA C 11 VAL C 13 0 SHEET 2 AA7 2 PHE C 23 ASP C 25 -1 O ASP C 25 N ALA C 11 SHEET 1 AA8 5 PHE C 79 VAL C 82 0 SHEET 2 AA8 5 ILE C 56 THR C 60 1 N GLY C 59 O VAL C 82 SHEET 3 AA8 5 GLU C 118 LEU C 126 1 O LEU C 120 N ALA C 58 SHEET 4 AA8 5 LYS C 145 LEU C 155 1 O LYS C 145 N VAL C 119 SHEET 5 AA8 5 VAL C 169 PHE C 175 1 O PHE C 175 N GLU C 154 SHEET 1 AA9 2 THR C 92 ASP C 98 0 SHEET 2 AA9 2 SER C 103 HIS C 109 -1 O ILE C 108 N TYR C 93 SHEET 1 AB1 2 ALA D 11 PRO D 14 0 SHEET 2 AB1 2 MET D 22 ASP D 25 -1 O ASP D 25 N ALA D 11 SHEET 1 AB2 5 PHE D 79 VAL D 82 0 SHEET 2 AB2 5 ILE D 56 THR D 60 1 N GLY D 59 O VAL D 82 SHEET 3 AB2 5 GLU D 118 LEU D 126 1 O LEU D 120 N ALA D 58 SHEET 4 AB2 5 LYS D 145 LEU D 155 1 O LYS D 145 N VAL D 119 SHEET 5 AB2 5 VAL D 169 PHE D 175 1 O SER D 170 N LEU D 149 SHEET 1 AB3 2 THR D 92 ASP D 98 0 SHEET 2 AB3 2 SER D 103 HIS D 109 -1 O ILE D 108 N TYR D 93 CISPEP 1 PHE A 16 PRO A 17 0 5.91 CISPEP 2 GLU A 61 SER A 62 0 -16.37 CISPEP 3 PHE B 16 PRO B 17 0 5.55 CISPEP 4 GLU B 61 SER B 62 0 4.45 CISPEP 5 PHE C 16 PRO C 17 0 -0.23 CISPEP 6 GLU C 61 SER C 62 0 -7.99 CISPEP 7 PHE D 16 PRO D 17 0 4.85 CISPEP 8 GLU D 61 SER D 62 0 -0.21 SITE 1 AC1 4 MET A 22 PHE A 23 ARG A 24 LEU A 155 SITE 1 AC2 3 MET B 22 PHE B 23 ARG B 24 SITE 1 AC3 4 MET C 22 PHE C 23 ARG C 24 LEU C 125 SITE 1 AC4 4 MET D 22 PHE D 23 ARG D 24 LEU D 125 CRYST1 55.015 75.207 171.999 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018177 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013297 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005814 0.00000