HEADER DNA BINDING PROTEIN/DNA 30-NOV-17 5YWV TITLE CRYSTAL STRUCTURE OF TREX1 IN COMPLEX WITH A INOSINE CONTAINED SSDNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: THREE-PRIME REPAIR EXONUCLEASE 1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: 3'-5' EXONUCLEASE TREX1,DNASE III; COMPND 5 EC: 3.1.11.2; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: INOSINE CONTAINED SSDNA; COMPND 9 CHAIN: C, D; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: TREX1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-CODONPLUS(DE3)-RIPL; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28A; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_TAXID: 9606 KEYWDS EXONUCLEASE, DEDDH FAMILY, PROTEIN-DNA COMPLEX, DNA BINDING PROTEIN- KEYWDS 2 DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Y.Y.HSIAO REVDAT 2 22-NOV-23 5YWV 1 LINK REVDAT 1 23-MAY-18 5YWV 0 JRNL AUTH K.W.HUANG,T.C.LIU,R.Y.LIANG,L.Y.CHU,H.L.CHENG,J.W.CHU, JRNL AUTH 2 Y.Y.HSIAO JRNL TITL STRUCTURAL BASIS FOR OVERHANG EXCISION AND TERMINAL JRNL TITL 2 UNWINDING OF DNA DUPLEXES BY TREX1 JRNL REF PLOS BIOL. V. 16 05653 2018 JRNL REFN ESSN 1545-7885 JRNL PMID 29734329 JRNL DOI 10.1371/JOURNAL.PBIO.2005653 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.31 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 20526 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.164 REMARK 3 R VALUE (WORKING SET) : 0.159 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.770 REMARK 3 FREE R VALUE TEST SET COUNT : 1594 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.3074 - 5.1072 0.98 1823 144 0.1537 0.2070 REMARK 3 2 5.1072 - 4.0571 0.99 1756 131 0.1266 0.1747 REMARK 3 3 4.0571 - 3.5453 1.00 1731 167 0.1444 0.1882 REMARK 3 4 3.5453 - 3.2216 1.00 1730 136 0.1579 0.2439 REMARK 3 5 3.2216 - 2.9909 1.00 1705 139 0.1798 0.2401 REMARK 3 6 2.9909 - 2.8147 1.00 1706 148 0.1807 0.2469 REMARK 3 7 2.8147 - 2.6739 1.00 1714 143 0.1799 0.2402 REMARK 3 8 2.6739 - 2.5575 1.00 1705 135 0.1702 0.2556 REMARK 3 9 2.5575 - 2.4591 1.00 1714 142 0.1800 0.2528 REMARK 3 10 2.4591 - 2.3743 1.00 1656 164 0.1744 0.2190 REMARK 3 11 2.3743 - 2.3001 1.00 1692 145 0.1878 0.2775 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.130 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 3776 REMARK 3 ANGLE : 0.965 5174 REMARK 3 CHIRALITY : 0.038 589 REMARK 3 PLANARITY : 0.004 642 REMARK 3 DIHEDRAL : 15.978 1408 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -26.1873 7.7346 -21.9613 REMARK 3 T TENSOR REMARK 3 T11: 0.1830 T22: 0.1337 REMARK 3 T33: 0.1464 T12: 0.0066 REMARK 3 T13: -0.0042 T23: -0.0109 REMARK 3 L TENSOR REMARK 3 L11: 1.3632 L22: 0.6738 REMARK 3 L33: 0.7219 L12: -0.0208 REMARK 3 L13: -0.1489 L23: -0.1683 REMARK 3 S TENSOR REMARK 3 S11: -0.0331 S12: -0.0357 S13: -0.0215 REMARK 3 S21: 0.0086 S22: 0.0496 S23: 0.0271 REMARK 3 S31: -0.0029 S32: -0.0217 S33: -0.0180 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5YWV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 07-DEC-17. REMARK 100 THE DEPOSITION ID IS D_1300006035. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-NOV-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : BL13B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20577 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : 0.10700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.70 REMARK 200 R MERGE FOR SHELL (I) : 0.49500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.250 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3MXM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 33.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.86 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M MES MONOHYDRATE PH 6.0, 20%(W/V) REMARK 280 POLYETHYLENE GLYCOL MONOMETHYL ETHER 2,000, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 32.59600 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 42.62350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.35650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 42.62350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 32.59600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.35650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1760 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11390 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -30.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1980 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10860 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -55.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -16 REMARK 465 SER A -15 REMARK 465 HIS A -14 REMARK 465 MET A -13 REMARK 465 ALA A -12 REMARK 465 SER A -11 REMARK 465 MET A -10 REMARK 465 THR A -9 REMARK 465 GLY A -8 REMARK 465 GLY A -7 REMARK 465 GLN A -6 REMARK 465 GLN A -5 REMARK 465 MET A -4 REMARK 465 GLY A -3 REMARK 465 ARG A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 SER A 3 REMARK 465 SER A 167 REMARK 465 PRO A 168 REMARK 465 SER A 169 REMARK 465 GLY A 170 REMARK 465 ASN A 171 REMARK 465 GLY A 172 REMARK 465 SER A 173 REMARK 465 ALA A 237 REMARK 465 THR A 238 REMARK 465 THR A 239 REMARK 465 GLY A 240 REMARK 465 THR A 241 REMARK 465 THR A 242 REMARK 465 GLY B -16 REMARK 465 SER B -15 REMARK 465 HIS B -14 REMARK 465 MET B -13 REMARK 465 ALA B -12 REMARK 465 SER B -11 REMARK 465 MET B -10 REMARK 465 THR B -9 REMARK 465 GLY B -8 REMARK 465 GLY B -7 REMARK 465 GLN B -6 REMARK 465 GLN B -5 REMARK 465 MET B -4 REMARK 465 GLY B -3 REMARK 465 ARG B -2 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 GLY B 2 REMARK 465 SER B 3 REMARK 465 GLN B 4 REMARK 465 THR B 5 REMARK 465 PRO B 168 REMARK 465 SER B 169 REMARK 465 GLY B 170 REMARK 465 ASN B 171 REMARK 465 GLY B 172 REMARK 465 THR B 235 REMARK 465 PRO B 236 REMARK 465 ALA B 237 REMARK 465 THR B 238 REMARK 465 THR B 239 REMARK 465 GLY B 240 REMARK 465 THR B 241 REMARK 465 THR B 242 REMARK 465 DT C 1 REMARK 465 DT C 2 REMARK 465 DA C 3 REMARK 465 DT D 1 REMARK 465 DT D 2 REMARK 465 DA D 3 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DI C 6 C3' DI C 6 C2' -0.166 REMARK 500 DI C 6 C6 DI C 6 O6 0.127 REMARK 500 DI D 6 C3' DI D 6 C2' -0.170 REMARK 500 DI D 6 C6 DI D 6 O6 0.131 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 129 -76.87 -126.77 REMARK 500 HIS B 53 116.73 -162.91 REMARK 500 TYR B 129 -75.22 -133.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 18 OD2 REMARK 620 2 GLU A 20 OE1 77.2 REMARK 620 3 ASP A 200 OD2 108.0 123.6 REMARK 620 4 DG C 7 OP1 124.9 110.3 110.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 304 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 18 OD1 REMARK 620 2 HOH A 418 O 103.9 REMARK 620 3 HOH A 438 O 78.0 90.1 REMARK 620 4 DI C 6 O3' 147.7 104.5 87.0 REMARK 620 5 DG C 7 OP1 96.4 159.5 91.6 55.2 REMARK 620 6 HOH C 210 O 102.3 89.7 179.7 92.8 88.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 18 OD2 REMARK 620 2 GLU B 20 OE1 69.9 REMARK 620 3 ASP B 200 OD2 107.7 127.8 REMARK 620 4 DG D 7 OP1 117.5 117.7 109.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 306 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 18 OD1 REMARK 620 2 HOH B 418 O 89.9 REMARK 620 3 HOH B 437 O 91.1 91.3 REMARK 620 4 DI D 6 O3' 149.3 89.0 119.6 REMARK 620 5 DG D 7 OP1 94.9 99.3 167.8 55.2 REMARK 620 6 HOH D 204 O 88.2 178.1 88.5 92.8 81.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MES B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 306 DBREF 5YWV A 1 242 UNP Q91XB0 TREX1_MOUSE 1 242 DBREF 5YWV B 1 242 UNP Q91XB0 TREX1_MOUSE 1 242 DBREF 5YWV C 1 7 PDB 5YWV 5YWV 1 7 DBREF 5YWV D 1 7 PDB 5YWV 5YWV 1 7 SEQADV 5YWV GLY A -16 UNP Q91XB0 EXPRESSION TAG SEQADV 5YWV SER A -15 UNP Q91XB0 EXPRESSION TAG SEQADV 5YWV HIS A -14 UNP Q91XB0 EXPRESSION TAG SEQADV 5YWV MET A -13 UNP Q91XB0 EXPRESSION TAG SEQADV 5YWV ALA A -12 UNP Q91XB0 EXPRESSION TAG SEQADV 5YWV SER A -11 UNP Q91XB0 EXPRESSION TAG SEQADV 5YWV MET A -10 UNP Q91XB0 EXPRESSION TAG SEQADV 5YWV THR A -9 UNP Q91XB0 EXPRESSION TAG SEQADV 5YWV GLY A -8 UNP Q91XB0 EXPRESSION TAG SEQADV 5YWV GLY A -7 UNP Q91XB0 EXPRESSION TAG SEQADV 5YWV GLN A -6 UNP Q91XB0 EXPRESSION TAG SEQADV 5YWV GLN A -5 UNP Q91XB0 EXPRESSION TAG SEQADV 5YWV MET A -4 UNP Q91XB0 EXPRESSION TAG SEQADV 5YWV GLY A -3 UNP Q91XB0 EXPRESSION TAG SEQADV 5YWV ARG A -2 UNP Q91XB0 EXPRESSION TAG SEQADV 5YWV GLY A -1 UNP Q91XB0 EXPRESSION TAG SEQADV 5YWV SER A 0 UNP Q91XB0 EXPRESSION TAG SEQADV 5YWV GLY B -16 UNP Q91XB0 EXPRESSION TAG SEQADV 5YWV SER B -15 UNP Q91XB0 EXPRESSION TAG SEQADV 5YWV HIS B -14 UNP Q91XB0 EXPRESSION TAG SEQADV 5YWV MET B -13 UNP Q91XB0 EXPRESSION TAG SEQADV 5YWV ALA B -12 UNP Q91XB0 EXPRESSION TAG SEQADV 5YWV SER B -11 UNP Q91XB0 EXPRESSION TAG SEQADV 5YWV MET B -10 UNP Q91XB0 EXPRESSION TAG SEQADV 5YWV THR B -9 UNP Q91XB0 EXPRESSION TAG SEQADV 5YWV GLY B -8 UNP Q91XB0 EXPRESSION TAG SEQADV 5YWV GLY B -7 UNP Q91XB0 EXPRESSION TAG SEQADV 5YWV GLN B -6 UNP Q91XB0 EXPRESSION TAG SEQADV 5YWV GLN B -5 UNP Q91XB0 EXPRESSION TAG SEQADV 5YWV MET B -4 UNP Q91XB0 EXPRESSION TAG SEQADV 5YWV GLY B -3 UNP Q91XB0 EXPRESSION TAG SEQADV 5YWV ARG B -2 UNP Q91XB0 EXPRESSION TAG SEQADV 5YWV GLY B -1 UNP Q91XB0 EXPRESSION TAG SEQADV 5YWV SER B 0 UNP Q91XB0 EXPRESSION TAG SEQRES 1 A 259 GLY SER HIS MET ALA SER MET THR GLY GLY GLN GLN MET SEQRES 2 A 259 GLY ARG GLY SER MET GLY SER GLN THR LEU PRO HIS GLY SEQRES 3 A 259 HIS MET GLN THR LEU ILE PHE LEU ASP LEU GLU ALA THR SEQRES 4 A 259 GLY LEU PRO SER SER ARG PRO GLU VAL THR GLU LEU CYS SEQRES 5 A 259 LEU LEU ALA VAL HIS ARG ARG ALA LEU GLU ASN THR SER SEQRES 6 A 259 ILE SER GLN GLY HIS PRO PRO PRO VAL PRO ARG PRO PRO SEQRES 7 A 259 ARG VAL VAL ASP LYS LEU SER LEU CYS ILE ALA PRO GLY SEQRES 8 A 259 LYS ALA CYS SER PRO GLY ALA SER GLU ILE THR GLY LEU SEQRES 9 A 259 SER LYS ALA GLU LEU GLU VAL GLN GLY ARG GLN ARG PHE SEQRES 10 A 259 ASP ASP ASN LEU ALA ILE LEU LEU ARG ALA PHE LEU GLN SEQRES 11 A 259 ARG GLN PRO GLN PRO CYS CYS LEU VAL ALA HIS ASN GLY SEQRES 12 A 259 ASP ARG TYR ASP PHE PRO LEU LEU GLN THR GLU LEU ALA SEQRES 13 A 259 ARG LEU SER THR PRO SER PRO LEU ASP GLY THR PHE CYS SEQRES 14 A 259 VAL ASP SER ILE ALA ALA LEU LYS ALA LEU GLU GLN ALA SEQRES 15 A 259 SER SER PRO SER GLY ASN GLY SER ARG LYS SER TYR SER SEQRES 16 A 259 LEU GLY SER ILE TYR THR ARG LEU TYR TRP GLN ALA PRO SEQRES 17 A 259 THR ASP SER HIS THR ALA GLU GLY ASP VAL LEU THR LEU SEQRES 18 A 259 LEU SER ILE CYS GLN TRP LYS PRO GLN ALA LEU LEU GLN SEQRES 19 A 259 TRP VAL ASP GLU HIS ALA ARG PRO PHE SER THR VAL LYS SEQRES 20 A 259 PRO MET TYR GLY THR PRO ALA THR THR GLY THR THR SEQRES 1 B 259 GLY SER HIS MET ALA SER MET THR GLY GLY GLN GLN MET SEQRES 2 B 259 GLY ARG GLY SER MET GLY SER GLN THR LEU PRO HIS GLY SEQRES 3 B 259 HIS MET GLN THR LEU ILE PHE LEU ASP LEU GLU ALA THR SEQRES 4 B 259 GLY LEU PRO SER SER ARG PRO GLU VAL THR GLU LEU CYS SEQRES 5 B 259 LEU LEU ALA VAL HIS ARG ARG ALA LEU GLU ASN THR SER SEQRES 6 B 259 ILE SER GLN GLY HIS PRO PRO PRO VAL PRO ARG PRO PRO SEQRES 7 B 259 ARG VAL VAL ASP LYS LEU SER LEU CYS ILE ALA PRO GLY SEQRES 8 B 259 LYS ALA CYS SER PRO GLY ALA SER GLU ILE THR GLY LEU SEQRES 9 B 259 SER LYS ALA GLU LEU GLU VAL GLN GLY ARG GLN ARG PHE SEQRES 10 B 259 ASP ASP ASN LEU ALA ILE LEU LEU ARG ALA PHE LEU GLN SEQRES 11 B 259 ARG GLN PRO GLN PRO CYS CYS LEU VAL ALA HIS ASN GLY SEQRES 12 B 259 ASP ARG TYR ASP PHE PRO LEU LEU GLN THR GLU LEU ALA SEQRES 13 B 259 ARG LEU SER THR PRO SER PRO LEU ASP GLY THR PHE CYS SEQRES 14 B 259 VAL ASP SER ILE ALA ALA LEU LYS ALA LEU GLU GLN ALA SEQRES 15 B 259 SER SER PRO SER GLY ASN GLY SER ARG LYS SER TYR SER SEQRES 16 B 259 LEU GLY SER ILE TYR THR ARG LEU TYR TRP GLN ALA PRO SEQRES 17 B 259 THR ASP SER HIS THR ALA GLU GLY ASP VAL LEU THR LEU SEQRES 18 B 259 LEU SER ILE CYS GLN TRP LYS PRO GLN ALA LEU LEU GLN SEQRES 19 B 259 TRP VAL ASP GLU HIS ALA ARG PRO PHE SER THR VAL LYS SEQRES 20 B 259 PRO MET TYR GLY THR PRO ALA THR THR GLY THR THR SEQRES 1 C 7 DT DT DA DT DA DI DG SEQRES 1 D 7 DT DT DA DT DA DI DG HET MG A 301 1 HET NA A 302 1 HET EDO A 303 10 HET MG A 304 1 HET MG B 301 1 HET MES B 302 12 HET NA B 303 1 HET NA B 304 1 HET NA B 305 1 HET MG B 306 1 HETNAM MG MAGNESIUM ION HETNAM NA SODIUM ION HETNAM EDO 1,2-ETHANEDIOL HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID HETSYN EDO ETHYLENE GLYCOL FORMUL 5 MG 4(MG 2+) FORMUL 6 NA 4(NA 1+) FORMUL 7 EDO C2 H6 O2 FORMUL 10 MES C6 H13 N O4 S FORMUL 15 HOH *174(H2 O) HELIX 1 AA1 LEU A 24 ARG A 28 5 5 HELIX 2 AA2 ARG A 41 ASN A 46 1 6 HELIX 3 AA3 SER A 78 GLY A 86 1 9 HELIX 4 AA4 SER A 88 GLN A 95 1 8 HELIX 5 AA5 ASP A 101 ARG A 114 1 14 HELIX 6 AA6 TYR A 129 ARG A 140 1 12 HELIX 7 AA7 SER A 155 ALA A 165 1 11 HELIX 8 AA8 SER A 178 TRP A 188 1 11 HELIX 9 AA9 THR A 196 GLN A 209 1 14 HELIX 10 AB1 LYS A 211 ALA A 223 1 13 HELIX 11 AB2 SER A 227 VAL A 229 5 3 HELIX 12 AB3 LEU B 24 ARG B 28 5 5 HELIX 13 AB4 ARG B 41 ASN B 46 1 6 HELIX 14 AB5 SER B 78 GLY B 86 1 9 HELIX 15 AB6 SER B 88 GLN B 95 1 8 HELIX 16 AB7 ASP B 101 GLN B 113 1 13 HELIX 17 AB8 TYR B 129 ARG B 140 1 12 HELIX 18 AB9 SER B 155 SER B 167 1 13 HELIX 19 AC1 SER B 178 TRP B 188 1 11 HELIX 20 AC2 THR B 196 GLN B 209 1 14 HELIX 21 AC3 LYS B 211 ALA B 223 1 13 HELIX 22 AC4 SER B 227 VAL B 229 5 3 SHEET 1 AA112 ARG A 224 PRO A 225 0 SHEET 2 AA112 PHE A 151 ASP A 154 -1 N CYS A 152 O ARG A 224 SHEET 3 AA112 CYS A 119 ALA A 123 1 N LEU A 121 O PHE A 151 SHEET 4 AA112 THR A 13 ALA A 21 1 N LEU A 17 O VAL A 122 SHEET 5 AA112 VAL A 31 HIS A 40 -1 O VAL A 39 N LEU A 14 SHEET 6 AA112 ASP A 65 CYS A 70 -1 O LEU A 69 N LEU A 34 SHEET 7 AA112 ASP B 65 CYS B 70 -1 O SER B 68 N LYS A 66 SHEET 8 AA112 VAL B 31 HIS B 40 -1 N LEU B 36 O LEU B 67 SHEET 9 AA112 THR B 13 ALA B 21 -1 N LEU B 14 O VAL B 39 SHEET 10 AA112 CYS B 119 ALA B 123 1 O CYS B 120 N ILE B 15 SHEET 11 AA112 PHE B 151 ASP B 154 1 O PHE B 151 N LEU B 121 SHEET 12 AA112 ARG B 224 PRO B 225 -1 O ARG B 224 N CYS B 152 LINK OD2 ASP A 18 MG MG A 301 1555 1555 2.66 LINK OD1 ASP A 18 MG MG A 304 1555 1555 2.62 LINK OE1 GLU A 20 MG MG A 301 1555 1555 2.39 LINK OD2 ASP A 200 MG MG A 301 1555 1555 2.31 LINK MG MG A 301 OP1 DG C 7 1555 1555 2.56 LINK MG MG A 304 O HOH A 418 1555 1555 2.17 LINK MG MG A 304 O HOH A 438 1555 1555 2.19 LINK MG MG A 304 O3' DI C 6 1555 1555 2.74 LINK MG MG A 304 OP1 DG C 7 1555 1555 2.69 LINK MG MG A 304 O HOH C 210 1555 1555 2.19 LINK OD2 ASP B 18 MG MG B 301 1555 1555 2.96 LINK OD1 ASP B 18 MG MG B 306 1555 1555 2.64 LINK OE1 GLU B 20 MG MG B 301 1555 1555 2.38 LINK OD2 ASP B 200 MG MG B 301 1555 1555 2.58 LINK MG MG B 301 OP1 DG D 7 1555 1555 2.52 LINK MG MG B 306 O HOH B 418 1555 1555 2.19 LINK MG MG B 306 O HOH B 437 1555 1555 2.18 LINK MG MG B 306 O3' DI D 6 1555 1555 2.75 LINK MG MG B 306 OP1 DG D 7 1555 1555 2.72 LINK MG MG B 306 O HOH D 204 1555 1555 2.19 CISPEP 1 GLN A 4 THR A 5 0 6.06 CISPEP 2 HIS A 53 PRO A 54 0 2.62 CISPEP 3 GLN A 117 PRO A 118 0 -2.96 CISPEP 4 HIS B 53 PRO B 54 0 -1.91 CISPEP 5 GLN B 117 PRO B 118 0 -5.11 SITE 1 AC1 4 ASP A 18 GLU A 20 ASP A 200 DG C 7 SITE 1 AC2 3 LYS A 211 GLN A 213 ALA A 214 SITE 1 AC3 2 THR A 184 TRP A 188 SITE 1 AC4 6 ASP A 18 HOH A 418 HOH A 438 DI C 6 SITE 2 AC4 6 DG C 7 HOH C 210 SITE 1 AC5 5 ASP B 18 GLU B 20 HIS B 195 ASP B 200 SITE 2 AC5 5 DG D 7 SITE 1 AC6 7 PRO A 56 VAL A 57 GLN A 189 ASP B 148 SITE 2 AC6 7 GLY B 149 PRO B 225 SER B 227 SITE 1 AC7 3 GLY B 23 LEU B 24 DG D 7 SITE 1 AC8 4 LYS B 211 PRO B 212 GLN B 213 ALA B 214 SITE 1 AC9 3 LEU B 24 PRO B 25 SER B 26 SITE 1 AD1 6 ASP B 18 HOH B 418 HOH B 437 DI D 6 SITE 2 AD1 6 DG D 7 HOH D 204 CRYST1 65.192 80.713 85.247 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015339 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012390 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011731 0.00000