HEADER REPLICATION 01-DEC-17 5YX5 OBSLTE 18-DEC-19 5YX5 6A4V TITLE CRYSTAL STRUCTURE OF VIRAL PARP1 INTERACTING PROTEIN IN MURINE TITLE 2 GAMMAHERPESVIRUS 68 COMPND MOL_ID: 1; COMPND 2 MOLECULE: 49 PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: VIRAL PARP1 INTERACTING PROTEIN, UNCHARACTERIZED PROTEIN COMPND 5 GAMMAHV.ORF49; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MURID HERPESVIRUS 4; SOURCE 3 ORGANISM_COMMON: MUHV-4; SOURCE 4 ORGANISM_TAXID: 33708; SOURCE 5 GENE: BNLF1, 49, GAMMAHV.ORF49; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PARP1 INTERACTING PROTEIN, HERPESVIRUS, REPLICATION EXPDTA X-RAY DIFFRACTION AUTHOR K.Y.HWANG,M.J.SONG,J.S.KIM,W.C.CHEONG REVDAT 2 18-DEC-19 5YX5 1 OBSLTE REVDAT 1 05-DEC-18 5YX5 0 JRNL AUTH K.Y.HWANG,M.J.SONG,J.S.KIM,W.C.CHEONG JRNL TITL CRYSTAL STRUCTURE OF VIRAL PARP1 INTERACTING PROTEIN IN JRNL TITL 2 MURINE GAMMAHERPESVIRUS 68 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.82 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 44540 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.685 REMARK 3 FREE R VALUE TEST SET COUNT : 1196 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.8200 - 5.6052 0.97 4969 133 0.2280 0.2509 REMARK 3 2 5.6052 - 4.4537 1.00 4933 138 0.2049 0.1938 REMARK 3 3 4.4537 - 3.8921 1.00 4914 135 0.1961 0.2222 REMARK 3 4 3.8921 - 3.5369 1.00 4877 128 0.1916 0.2218 REMARK 3 5 3.5369 - 3.2837 0.99 4846 132 0.1944 0.2067 REMARK 3 6 3.2837 - 3.0903 0.99 4809 130 0.1834 0.2014 REMARK 3 7 3.0903 - 2.9357 0.97 4699 135 0.1825 0.2226 REMARK 3 8 2.9357 - 2.8080 0.95 4581 133 0.1930 0.2511 REMARK 3 9 2.8080 - 2.7000 0.97 4716 132 0.2092 0.2455 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.235 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.511 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 51.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 61.92 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 4466 REMARK 3 ANGLE : 1.067 6054 REMARK 3 CHIRALITY : 0.051 723 REMARK 3 PLANARITY : 0.005 749 REMARK 3 DIHEDRAL : 15.711 2684 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5YX5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-DEC-17. REMARK 100 THE DEPOSITION ID IS D_1300006010. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-MAR-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-1A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 272254 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.5 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.9440 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.24 REMARK 200 COMPLETENESS FOR SHELL (%) : 75.9 REMARK 200 DATA REDUNDANCY IN SHELL : 1.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.627 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: AUTOSOL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 81.18 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS-HCL (PH 8.2), 0.33 M REMARK 280 SODIUM/POTASSIUM TARTRATE, 0.5% POLYETHYLENE GLYCOL 5000 MONO- REMARK 280 METHYL ETHER, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 104.77200 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 52.38600 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 52.38600 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 104.77200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3610 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25140 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -22.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -33 REMARK 465 GLY A -32 REMARK 465 SER A -31 REMARK 465 SER A -30 REMARK 465 HIS A -29 REMARK 465 HIS A -28 REMARK 465 HIS A -27 REMARK 465 HIS A -26 REMARK 465 HIS A -25 REMARK 465 HIS A -24 REMARK 465 SER A -23 REMARK 465 SER A -22 REMARK 465 GLY A -21 REMARK 465 LEU A -20 REMARK 465 VAL A -19 REMARK 465 PRO A -18 REMARK 465 ARG A -17 REMARK 465 GLY A -16 REMARK 465 SER A -15 REMARK 465 HIS A -14 REMARK 465 MET A -13 REMARK 465 ALA A -12 REMARK 465 SER A -11 REMARK 465 MET A -10 REMARK 465 THR A -9 REMARK 465 GLY A -8 REMARK 465 GLY A -7 REMARK 465 GLN A -6 REMARK 465 GLN A -5 REMARK 465 MET A -4 REMARK 465 GLY A -3 REMARK 465 ARG A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 ALA A 175 REMARK 465 ASP A 176 REMARK 465 THR A 231 REMARK 465 ASN A 232 REMARK 465 LEU A 233 REMARK 465 LEU A 234 REMARK 465 CYS A 235 REMARK 465 TYR A 236 REMARK 465 SER A 237 REMARK 465 LEU A 281 REMARK 465 PRO A 282 REMARK 465 THR A 283 REMARK 465 LEU A 284 REMARK 465 SER A 285 REMARK 465 ALA A 286 REMARK 465 GLU A 287 REMARK 465 GLY A 288 REMARK 465 GLU A 289 REMARK 465 SER A 290 REMARK 465 GLU A 291 REMARK 465 SER A 292 REMARK 465 GLU A 293 REMARK 465 ALA A 294 REMARK 465 ILE A 295 REMARK 465 ALA A 296 REMARK 465 ALA A 297 REMARK 465 GLU A 298 REMARK 465 ILE A 299 REMARK 465 PRO A 300 REMARK 465 SER A 301 REMARK 465 LEU A 302 REMARK 465 GLU A 303 REMARK 465 MET B -33 REMARK 465 GLY B -32 REMARK 465 SER B -31 REMARK 465 SER B -30 REMARK 465 HIS B -29 REMARK 465 HIS B -28 REMARK 465 HIS B -27 REMARK 465 HIS B -26 REMARK 465 HIS B -25 REMARK 465 HIS B -24 REMARK 465 SER B -23 REMARK 465 SER B -22 REMARK 465 GLY B -21 REMARK 465 LEU B -20 REMARK 465 VAL B -19 REMARK 465 PRO B -18 REMARK 465 ARG B -17 REMARK 465 GLY B -16 REMARK 465 SER B -15 REMARK 465 HIS B -14 REMARK 465 MET B -13 REMARK 465 ALA B -12 REMARK 465 SER B -11 REMARK 465 MET B -10 REMARK 465 THR B -9 REMARK 465 GLY B -8 REMARK 465 GLY B -7 REMARK 465 GLN B -6 REMARK 465 GLN B -5 REMARK 465 MET B -4 REMARK 465 GLY B -3 REMARK 465 ARG B -2 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 GLY B 2 REMARK 465 ALA B 175 REMARK 465 ASP B 176 REMARK 465 THR B 231 REMARK 465 ASN B 232 REMARK 465 LEU B 233 REMARK 465 LEU B 234 REMARK 465 CYS B 235 REMARK 465 TYR B 236 REMARK 465 LEU B 281 REMARK 465 PRO B 282 REMARK 465 THR B 283 REMARK 465 LEU B 284 REMARK 465 SER B 285 REMARK 465 ALA B 286 REMARK 465 GLU B 287 REMARK 465 GLY B 288 REMARK 465 GLU B 289 REMARK 465 SER B 290 REMARK 465 GLU B 291 REMARK 465 SER B 292 REMARK 465 GLU B 293 REMARK 465 ALA B 294 REMARK 465 ILE B 295 REMARK 465 ALA B 296 REMARK 465 ALA B 297 REMARK 465 GLU B 298 REMARK 465 ILE B 299 REMARK 465 PRO B 300 REMARK 465 SER B 301 REMARK 465 LEU B 302 REMARK 465 GLU B 303 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG B 81 O HOH B 401 1.34 REMARK 500 CZ ARG B 81 O HOH B 401 1.85 REMARK 500 OD1 ASP B 139 N GLU B 141 1.87 REMARK 500 OD2 ASP B 139 CD1 LEU B 143 1.89 REMARK 500 O LEU A 251 O HOH A 401 2.00 REMARK 500 OE1 GLU B 266 O HOH B 402 2.07 REMARK 500 OE1 GLU B 224 O HOH B 403 2.09 REMARK 500 OE1 GLU B 91 O HOH B 404 2.11 REMARK 500 NH2 ARG B 65 O HOH B 405 2.13 REMARK 500 OE1 GLU B 24 O HOH B 406 2.15 REMARK 500 O HOH B 491 O HOH B 493 2.19 REMARK 500 NH1 ARG B 81 O HOH B 401 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP B 139 CB - CG - OD1 ANGL. DEV. = -7.2 DEGREES REMARK 500 ASP B 139 CB - CG - OD2 ANGL. DEV. = 8.8 DEGREES REMARK 500 ASP B 139 N - CA - C ANGL. DEV. = 16.4 DEGREES REMARK 500 GLU B 141 CA - CB - CG ANGL. DEV. = 15.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 113 73.05 -172.60 REMARK 500 ASN A 152 32.16 -98.54 REMARK 500 GLU A 228 0.56 -68.87 REMARK 500 SER B 74 91.95 -57.91 REMARK 500 THR B 75 -78.97 -67.04 REMARK 500 ASN B 93 57.01 38.00 REMARK 500 ASP B 139 150.61 89.90 REMARK 500 GLU B 140 33.41 -148.02 REMARK 500 ALA B 142 14.75 151.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 VAL B 138 ASP B 139 130.98 REMARK 500 ASP B 139 GLU B 140 116.54 REMARK 500 GLU B 141 ALA B 142 -138.72 REMARK 500 ALA B 142 LEU B 143 144.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 516 DISTANCE = 5.93 ANGSTROMS REMARK 525 HOH A 517 DISTANCE = 6.28 ANGSTROMS REMARK 525 HOH A 518 DISTANCE = 7.04 ANGSTROMS REMARK 525 HOH A 519 DISTANCE = 7.52 ANGSTROMS REMARK 525 HOH A 520 DISTANCE = 8.48 ANGSTROMS DBREF 5YX5 A 1 301 UNP P88987 P88987_MHV68 1 301 DBREF 5YX5 B 1 301 UNP P88987 P88987_MHV68 1 301 SEQADV 5YX5 MET A -33 UNP P88987 EXPRESSION TAG SEQADV 5YX5 GLY A -32 UNP P88987 EXPRESSION TAG SEQADV 5YX5 SER A -31 UNP P88987 EXPRESSION TAG SEQADV 5YX5 SER A -30 UNP P88987 EXPRESSION TAG SEQADV 5YX5 HIS A -29 UNP P88987 EXPRESSION TAG SEQADV 5YX5 HIS A -28 UNP P88987 EXPRESSION TAG SEQADV 5YX5 HIS A -27 UNP P88987 EXPRESSION TAG SEQADV 5YX5 HIS A -26 UNP P88987 EXPRESSION TAG SEQADV 5YX5 HIS A -25 UNP P88987 EXPRESSION TAG SEQADV 5YX5 HIS A -24 UNP P88987 EXPRESSION TAG SEQADV 5YX5 SER A -23 UNP P88987 EXPRESSION TAG SEQADV 5YX5 SER A -22 UNP P88987 EXPRESSION TAG SEQADV 5YX5 GLY A -21 UNP P88987 EXPRESSION TAG SEQADV 5YX5 LEU A -20 UNP P88987 EXPRESSION TAG SEQADV 5YX5 VAL A -19 UNP P88987 EXPRESSION TAG SEQADV 5YX5 PRO A -18 UNP P88987 EXPRESSION TAG SEQADV 5YX5 ARG A -17 UNP P88987 EXPRESSION TAG SEQADV 5YX5 GLY A -16 UNP P88987 EXPRESSION TAG SEQADV 5YX5 SER A -15 UNP P88987 EXPRESSION TAG SEQADV 5YX5 HIS A -14 UNP P88987 EXPRESSION TAG SEQADV 5YX5 MET A -13 UNP P88987 EXPRESSION TAG SEQADV 5YX5 ALA A -12 UNP P88987 EXPRESSION TAG SEQADV 5YX5 SER A -11 UNP P88987 EXPRESSION TAG SEQADV 5YX5 MET A -10 UNP P88987 EXPRESSION TAG SEQADV 5YX5 THR A -9 UNP P88987 EXPRESSION TAG SEQADV 5YX5 GLY A -8 UNP P88987 EXPRESSION TAG SEQADV 5YX5 GLY A -7 UNP P88987 EXPRESSION TAG SEQADV 5YX5 GLN A -6 UNP P88987 EXPRESSION TAG SEQADV 5YX5 GLN A -5 UNP P88987 EXPRESSION TAG SEQADV 5YX5 MET A -4 UNP P88987 EXPRESSION TAG SEQADV 5YX5 GLY A -3 UNP P88987 EXPRESSION TAG SEQADV 5YX5 ARG A -2 UNP P88987 EXPRESSION TAG SEQADV 5YX5 GLY A -1 UNP P88987 EXPRESSION TAG SEQADV 5YX5 SER A 0 UNP P88987 EXPRESSION TAG SEQADV 5YX5 LEU A 302 UNP P88987 EXPRESSION TAG SEQADV 5YX5 GLU A 303 UNP P88987 EXPRESSION TAG SEQADV 5YX5 MET B -33 UNP P88987 EXPRESSION TAG SEQADV 5YX5 GLY B -32 UNP P88987 EXPRESSION TAG SEQADV 5YX5 SER B -31 UNP P88987 EXPRESSION TAG SEQADV 5YX5 SER B -30 UNP P88987 EXPRESSION TAG SEQADV 5YX5 HIS B -29 UNP P88987 EXPRESSION TAG SEQADV 5YX5 HIS B -28 UNP P88987 EXPRESSION TAG SEQADV 5YX5 HIS B -27 UNP P88987 EXPRESSION TAG SEQADV 5YX5 HIS B -26 UNP P88987 EXPRESSION TAG SEQADV 5YX5 HIS B -25 UNP P88987 EXPRESSION TAG SEQADV 5YX5 HIS B -24 UNP P88987 EXPRESSION TAG SEQADV 5YX5 SER B -23 UNP P88987 EXPRESSION TAG SEQADV 5YX5 SER B -22 UNP P88987 EXPRESSION TAG SEQADV 5YX5 GLY B -21 UNP P88987 EXPRESSION TAG SEQADV 5YX5 LEU B -20 UNP P88987 EXPRESSION TAG SEQADV 5YX5 VAL B -19 UNP P88987 EXPRESSION TAG SEQADV 5YX5 PRO B -18 UNP P88987 EXPRESSION TAG SEQADV 5YX5 ARG B -17 UNP P88987 EXPRESSION TAG SEQADV 5YX5 GLY B -16 UNP P88987 EXPRESSION TAG SEQADV 5YX5 SER B -15 UNP P88987 EXPRESSION TAG SEQADV 5YX5 HIS B -14 UNP P88987 EXPRESSION TAG SEQADV 5YX5 MET B -13 UNP P88987 EXPRESSION TAG SEQADV 5YX5 ALA B -12 UNP P88987 EXPRESSION TAG SEQADV 5YX5 SER B -11 UNP P88987 EXPRESSION TAG SEQADV 5YX5 MET B -10 UNP P88987 EXPRESSION TAG SEQADV 5YX5 THR B -9 UNP P88987 EXPRESSION TAG SEQADV 5YX5 GLY B -8 UNP P88987 EXPRESSION TAG SEQADV 5YX5 GLY B -7 UNP P88987 EXPRESSION TAG SEQADV 5YX5 GLN B -6 UNP P88987 EXPRESSION TAG SEQADV 5YX5 GLN B -5 UNP P88987 EXPRESSION TAG SEQADV 5YX5 MET B -4 UNP P88987 EXPRESSION TAG SEQADV 5YX5 GLY B -3 UNP P88987 EXPRESSION TAG SEQADV 5YX5 ARG B -2 UNP P88987 EXPRESSION TAG SEQADV 5YX5 GLY B -1 UNP P88987 EXPRESSION TAG SEQADV 5YX5 SER B 0 UNP P88987 EXPRESSION TAG SEQADV 5YX5 LEU B 302 UNP P88987 EXPRESSION TAG SEQADV 5YX5 GLU B 303 UNP P88987 EXPRESSION TAG SEQRES 1 A 337 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 337 LEU VAL PRO ARG GLY SER HIS MET ALA SER MET THR GLY SEQRES 3 A 337 GLY GLN GLN MET GLY ARG GLY SER MET GLY ASP GLU PHE SEQRES 4 A 337 TYR TYR PRO SER LEU GLU SER VAL VAL HIS THR PHE CYS SEQRES 5 A 337 VAL ILE ASP THR ARG GLU HIS ASN ARG VAL SER ALA CYS SEQRES 6 A 337 LEU CYS LYS LEU GLN VAL LEU CYS LYS ILE CYS GLN THR SEQRES 7 A 337 LEU ARG HIS ASN LEU ASP THR GLU PRO PHE LEU LEU PRO SEQRES 8 A 337 HIS LEU ARG GLU LEU ILE ILE ARG HIS LEU THR LEU LEU SEQRES 9 A 337 GLU ARG LEU SER THR THR SER LYS PHE GLN ARG ILE LEU SEQRES 10 A 337 ASP TYR MET LYS LEU SER LEU GLU ALA ASN ASP SER ASN SEQRES 11 A 337 LEU LEU GLN ASP LEU ALA ILE GLY THR VAL ASN LEU LEU SEQRES 12 A 337 GLY CYS GLN SER PRO GLU ILE LEU SER ILE PRO TYR ASP SEQRES 13 A 337 LYS ASP GLN PRO VAL HIS GLU TRP CYS ALA CYS PHE LEU SEQRES 14 A 337 THR SER VAL ASP GLU GLU ALA LEU ARG LYS ILE SER SER SEQRES 15 A 337 MET LEU ASP ASN LYS HIS PHE SER TYR MET TYR ASN PHE SEQRES 16 A 337 LYS THR PHE LEU LYS TYR SER LEU GLU LEU GLU THR ALA SEQRES 17 A 337 ALA ASP PHE ASP LEU SER THR GLY LEU ASN VAL LEU VAL SEQRES 18 A 337 TYR TRP VAL SER VAL PHE LYS LEU PHE SER VAL CYS VAL SEQRES 19 A 337 GLN SER GLN PHE LEU LEU ASP SER LEU VAL ALA PHE ASN SEQRES 20 A 337 ALA LEU PHE LYS ASN HIS VAL LYS GLU LEU GLU ALA ILE SEQRES 21 A 337 VAL GLU SER ASP THR ASN LEU LEU CYS TYR SER THR SER SEQRES 22 A 337 VAL VAL TRP ALA LYS LEU SER ASN LEU ASN HIS LEU LEU SEQRES 23 A 337 HIS ARG LEU GLN THR SER ASN ASN THR LEU VAL PHE ASP SEQRES 24 A 337 GLU ILE LEU ILE CYS LEU ARG GLY LEU GLN ILE TYR ILE SEQRES 25 A 337 LYS CYS LEU PRO THR LEU SER ALA GLU GLY GLU SER GLU SEQRES 26 A 337 SER GLU ALA ILE ALA ALA GLU ILE PRO SER LEU GLU SEQRES 1 B 337 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 337 LEU VAL PRO ARG GLY SER HIS MET ALA SER MET THR GLY SEQRES 3 B 337 GLY GLN GLN MET GLY ARG GLY SER MET GLY ASP GLU PHE SEQRES 4 B 337 TYR TYR PRO SER LEU GLU SER VAL VAL HIS THR PHE CYS SEQRES 5 B 337 VAL ILE ASP THR ARG GLU HIS ASN ARG VAL SER ALA CYS SEQRES 6 B 337 LEU CYS LYS LEU GLN VAL LEU CYS LYS ILE CYS GLN THR SEQRES 7 B 337 LEU ARG HIS ASN LEU ASP THR GLU PRO PHE LEU LEU PRO SEQRES 8 B 337 HIS LEU ARG GLU LEU ILE ILE ARG HIS LEU THR LEU LEU SEQRES 9 B 337 GLU ARG LEU SER THR THR SER LYS PHE GLN ARG ILE LEU SEQRES 10 B 337 ASP TYR MET LYS LEU SER LEU GLU ALA ASN ASP SER ASN SEQRES 11 B 337 LEU LEU GLN ASP LEU ALA ILE GLY THR VAL ASN LEU LEU SEQRES 12 B 337 GLY CYS GLN SER PRO GLU ILE LEU SER ILE PRO TYR ASP SEQRES 13 B 337 LYS ASP GLN PRO VAL HIS GLU TRP CYS ALA CYS PHE LEU SEQRES 14 B 337 THR SER VAL ASP GLU GLU ALA LEU ARG LYS ILE SER SER SEQRES 15 B 337 MET LEU ASP ASN LYS HIS PHE SER TYR MET TYR ASN PHE SEQRES 16 B 337 LYS THR PHE LEU LYS TYR SER LEU GLU LEU GLU THR ALA SEQRES 17 B 337 ALA ASP PHE ASP LEU SER THR GLY LEU ASN VAL LEU VAL SEQRES 18 B 337 TYR TRP VAL SER VAL PHE LYS LEU PHE SER VAL CYS VAL SEQRES 19 B 337 GLN SER GLN PHE LEU LEU ASP SER LEU VAL ALA PHE ASN SEQRES 20 B 337 ALA LEU PHE LYS ASN HIS VAL LYS GLU LEU GLU ALA ILE SEQRES 21 B 337 VAL GLU SER ASP THR ASN LEU LEU CYS TYR SER THR SER SEQRES 22 B 337 VAL VAL TRP ALA LYS LEU SER ASN LEU ASN HIS LEU LEU SEQRES 23 B 337 HIS ARG LEU GLN THR SER ASN ASN THR LEU VAL PHE ASP SEQRES 24 B 337 GLU ILE LEU ILE CYS LEU ARG GLY LEU GLN ILE TYR ILE SEQRES 25 B 337 LYS CYS LEU PRO THR LEU SER ALA GLU GLY GLU SER GLU SEQRES 26 B 337 SER GLU ALA ILE ALA ALA GLU ILE PRO SER LEU GLU FORMUL 3 HOH *229(H2 O) HELIX 1 AA1 SER A 9 GLU A 24 1 16 HELIX 2 AA2 ASN A 26 ARG A 72 1 47 HELIX 3 AA3 THR A 76 GLU A 91 1 16 HELIX 4 AA4 ASN A 96 CYS A 111 1 16 HELIX 5 AA5 GLN A 112 ILE A 119 5 8 HELIX 6 AA6 PRO A 126 LEU A 135 1 10 HELIX 7 AA7 ASP A 139 ASP A 151 1 13 HELIX 8 AA8 ASN A 160 LEU A 171 1 12 HELIX 9 AA9 ASP A 178 SER A 202 1 25 HELIX 10 AB1 GLN A 203 GLU A 228 1 26 HELIX 11 AB2 SER A 239 SER A 258 1 20 HELIX 12 AB3 ASN A 260 LYS A 279 1 20 HELIX 13 AB4 SER B 9 GLU B 24 1 16 HELIX 14 AB5 ASN B 26 GLU B 52 1 27 HELIX 15 AB6 PHE B 54 ARG B 72 1 19 HELIX 16 AB7 THR B 76 ASN B 93 1 18 HELIX 17 AB8 ASN B 96 SER B 113 1 18 HELIX 18 AB9 PRO B 114 ILE B 119 5 6 HELIX 19 AC1 PRO B 126 LEU B 135 1 10 HELIX 20 AC2 ALA B 142 ASP B 151 1 10 HELIX 21 AC3 ASN B 160 LEU B 171 1 12 HELIX 22 AC4 ASP B 178 SER B 202 1 25 HELIX 23 AC5 GLN B 203 ASP B 230 1 28 HELIX 24 AC6 SER B 239 GLN B 256 1 18 HELIX 25 AC7 ASN B 260 LYS B 279 1 20 SHEET 1 AA1 2 PHE A 5 TYR A 7 0 SHEET 2 AA1 2 MET A 158 TYR A 159 -1 O MET A 158 N TYR A 6 SHEET 1 AA2 2 PHE B 5 TYR B 7 0 SHEET 2 AA2 2 MET B 158 TYR B 159 -1 O MET B 158 N TYR B 7 CRYST1 134.179 134.179 157.158 90.00 90.00 120.00 P 32 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007453 0.004303 0.000000 0.00000 SCALE2 0.000000 0.008606 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006363 0.00000