data_5YXD # _entry.id 5YXD # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5YXD pdb_00005yxd 10.2210/pdb5yxd/pdb WWPDB D_1300006070 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2019-03-13 2 'Structure model' 1 1 2024-03-27 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond 3 2 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_database_2.pdbx_DOI' 2 2 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5YXD _pdbx_database_status.recvd_initial_deposition_date 2017-12-05 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Yi, L.' 1 ? 'Yong, L.' 2 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'A ligand F binding to FXR' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Yi, L.' 1 ? primary 'Yong, L.' 2 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Bile acid receptor' 26802.789 1 ? ? ? ? 2 polymer syn 'Peptide from Nuclear receptor coactivator' 1349.576 1 ? ? ? ? 3 non-polymer syn 'ethyl methyl 4-(2,3-dichlorophenyl)-2,6-dimethylpyridine-3,5-dicarboxylate' 382.238 1 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name ;Farnesoid X-activated receptor,Farnesol receptor HRR-1,Nuclear receptor subfamily 1 group H member 4,Retinoid X receptor-interacting protein 14,RXR-interacting protein 14 ; # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;ELTPDQQTLLHFIMDSYNKQRMPQEITNKILKEEFSAEENFLILTEMATNHVQVLVEFTKKLPGFQTLDHEDQIALLKGS AVEAMFLRSAEIFNKKLPSGHSDLLEERIRNSGISDEYITPMFSFYKSIGELKMTQEEYALLTAIVILSPDRQYIKDREA VEKLQEPLLDVLQKLCKIHQPENPQHFACLLGRLTELRTFNHHHAEMLMSWRVNDHKFTPLLCEIWDVQ ; ;ELTPDQQTLLHFIMDSYNKQRMPQEITNKILKEEFSAEENFLILTEMATNHVQVLVEFTKKLPGFQTLDHEDQIALLKGS AVEAMFLRSAEIFNKKLPSGHSDLLEERIRNSGISDEYITPMFSFYKSIGELKMTQEEYALLTAIVILSPDRQYIKDREA VEKLQEPLLDVLQKLCKIHQPENPQHFACLLGRLTELRTFNHHHAEMLMSWRVNDHKFTPLLCEIWDVQ ; A ? 2 'polypeptide(L)' no no NEALLRYLLDK NEALLRYLLDK B ? # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name 'ethyl methyl 4-(2,3-dichlorophenyl)-2,6-dimethylpyridine-3,5-dicarboxylate' _pdbx_entity_nonpoly.comp_id 93R # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLU n 1 2 LEU n 1 3 THR n 1 4 PRO n 1 5 ASP n 1 6 GLN n 1 7 GLN n 1 8 THR n 1 9 LEU n 1 10 LEU n 1 11 HIS n 1 12 PHE n 1 13 ILE n 1 14 MET n 1 15 ASP n 1 16 SER n 1 17 TYR n 1 18 ASN n 1 19 LYS n 1 20 GLN n 1 21 ARG n 1 22 MET n 1 23 PRO n 1 24 GLN n 1 25 GLU n 1 26 ILE n 1 27 THR n 1 28 ASN n 1 29 LYS n 1 30 ILE n 1 31 LEU n 1 32 LYS n 1 33 GLU n 1 34 GLU n 1 35 PHE n 1 36 SER n 1 37 ALA n 1 38 GLU n 1 39 GLU n 1 40 ASN n 1 41 PHE n 1 42 LEU n 1 43 ILE n 1 44 LEU n 1 45 THR n 1 46 GLU n 1 47 MET n 1 48 ALA n 1 49 THR n 1 50 ASN n 1 51 HIS n 1 52 VAL n 1 53 GLN n 1 54 VAL n 1 55 LEU n 1 56 VAL n 1 57 GLU n 1 58 PHE n 1 59 THR n 1 60 LYS n 1 61 LYS n 1 62 LEU n 1 63 PRO n 1 64 GLY n 1 65 PHE n 1 66 GLN n 1 67 THR n 1 68 LEU n 1 69 ASP n 1 70 HIS n 1 71 GLU n 1 72 ASP n 1 73 GLN n 1 74 ILE n 1 75 ALA n 1 76 LEU n 1 77 LEU n 1 78 LYS n 1 79 GLY n 1 80 SER n 1 81 ALA n 1 82 VAL n 1 83 GLU n 1 84 ALA n 1 85 MET n 1 86 PHE n 1 87 LEU n 1 88 ARG n 1 89 SER n 1 90 ALA n 1 91 GLU n 1 92 ILE n 1 93 PHE n 1 94 ASN n 1 95 LYS n 1 96 LYS n 1 97 LEU n 1 98 PRO n 1 99 SER n 1 100 GLY n 1 101 HIS n 1 102 SER n 1 103 ASP n 1 104 LEU n 1 105 LEU n 1 106 GLU n 1 107 GLU n 1 108 ARG n 1 109 ILE n 1 110 ARG n 1 111 ASN n 1 112 SER n 1 113 GLY n 1 114 ILE n 1 115 SER n 1 116 ASP n 1 117 GLU n 1 118 TYR n 1 119 ILE n 1 120 THR n 1 121 PRO n 1 122 MET n 1 123 PHE n 1 124 SER n 1 125 PHE n 1 126 TYR n 1 127 LYS n 1 128 SER n 1 129 ILE n 1 130 GLY n 1 131 GLU n 1 132 LEU n 1 133 LYS n 1 134 MET n 1 135 THR n 1 136 GLN n 1 137 GLU n 1 138 GLU n 1 139 TYR n 1 140 ALA n 1 141 LEU n 1 142 LEU n 1 143 THR n 1 144 ALA n 1 145 ILE n 1 146 VAL n 1 147 ILE n 1 148 LEU n 1 149 SER n 1 150 PRO n 1 151 ASP n 1 152 ARG n 1 153 GLN n 1 154 TYR n 1 155 ILE n 1 156 LYS n 1 157 ASP n 1 158 ARG n 1 159 GLU n 1 160 ALA n 1 161 VAL n 1 162 GLU n 1 163 LYS n 1 164 LEU n 1 165 GLN n 1 166 GLU n 1 167 PRO n 1 168 LEU n 1 169 LEU n 1 170 ASP n 1 171 VAL n 1 172 LEU n 1 173 GLN n 1 174 LYS n 1 175 LEU n 1 176 CYS n 1 177 LYS n 1 178 ILE n 1 179 HIS n 1 180 GLN n 1 181 PRO n 1 182 GLU n 1 183 ASN n 1 184 PRO n 1 185 GLN n 1 186 HIS n 1 187 PHE n 1 188 ALA n 1 189 CYS n 1 190 LEU n 1 191 LEU n 1 192 GLY n 1 193 ARG n 1 194 LEU n 1 195 THR n 1 196 GLU n 1 197 LEU n 1 198 ARG n 1 199 THR n 1 200 PHE n 1 201 ASN n 1 202 HIS n 1 203 HIS n 1 204 HIS n 1 205 ALA n 1 206 GLU n 1 207 MET n 1 208 LEU n 1 209 MET n 1 210 SER n 1 211 TRP n 1 212 ARG n 1 213 VAL n 1 214 ASN n 1 215 ASP n 1 216 HIS n 1 217 LYS n 1 218 PHE n 1 219 THR n 1 220 PRO n 1 221 LEU n 1 222 LEU n 1 223 CYS n 1 224 GLU n 1 225 ILE n 1 226 TRP n 1 227 ASP n 1 228 VAL n 1 229 GLN n 2 1 ASN n 2 2 GLU n 2 3 ALA n 2 4 LEU n 2 5 LEU n 2 6 ARG n 2 7 TYR n 2 8 LEU n 2 9 LEU n 2 10 ASP n 2 11 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 229 _entity_src_gen.gene_src_common_name Human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'NR1H4, BAR, FXR, HRR1, RIP14' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 11 _pdbx_entity_src_syn.organism_scientific 'Homo sapiens' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 93R non-polymer . 'ethyl methyl 4-(2,3-dichlorophenyl)-2,6-dimethylpyridine-3,5-dicarboxylate' ? 'C18 H17 Cl2 N O4' 382.238 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLU 1 244 244 GLU GLU A . n A 1 2 LEU 2 245 245 LEU LEU A . n A 1 3 THR 3 246 246 THR THR A . n A 1 4 PRO 4 247 247 PRO PRO A . n A 1 5 ASP 5 248 248 ASP ASP A . n A 1 6 GLN 6 249 249 GLN GLN A . n A 1 7 GLN 7 250 250 GLN GLN A . n A 1 8 THR 8 251 251 THR THR A . n A 1 9 LEU 9 252 252 LEU LEU A . n A 1 10 LEU 10 253 253 LEU LEU A . n A 1 11 HIS 11 254 254 HIS HIS A . n A 1 12 PHE 12 255 255 PHE PHE A . n A 1 13 ILE 13 256 256 ILE ILE A . n A 1 14 MET 14 257 257 MET MET A . n A 1 15 ASP 15 258 258 ASP ASP A . n A 1 16 SER 16 259 259 SER SER A . n A 1 17 TYR 17 260 260 TYR TYR A . n A 1 18 ASN 18 261 261 ASN ASN A . n A 1 19 LYS 19 262 262 LYS LYS A . n A 1 20 GLN 20 263 263 GLN GLN A . n A 1 21 ARG 21 264 264 ARG ARG A . n A 1 22 MET 22 265 265 MET MET A . n A 1 23 PRO 23 266 266 PRO PRO A . n A 1 24 GLN 24 267 267 GLN GLN A . n A 1 25 GLU 25 268 268 GLU GLU A . n A 1 26 ILE 26 269 269 ILE ILE A . n A 1 27 THR 27 270 270 THR THR A . n A 1 28 ASN 28 271 271 ASN ASN A . n A 1 29 LYS 29 272 272 LYS LYS A . n A 1 30 ILE 30 273 273 ILE ILE A . n A 1 31 LEU 31 274 274 LEU LEU A . n A 1 32 LYS 32 275 275 LYS LYS A . n A 1 33 GLU 33 276 276 GLU GLU A . n A 1 34 GLU 34 277 277 GLU GLU A . n A 1 35 PHE 35 278 278 PHE PHE A . n A 1 36 SER 36 279 279 SER SER A . n A 1 37 ALA 37 280 280 ALA ALA A . n A 1 38 GLU 38 281 281 GLU GLU A . n A 1 39 GLU 39 282 282 GLU GLU A . n A 1 40 ASN 40 283 283 ASN ASN A . n A 1 41 PHE 41 284 284 PHE PHE A . n A 1 42 LEU 42 285 285 LEU LEU A . n A 1 43 ILE 43 286 286 ILE ILE A . n A 1 44 LEU 44 287 287 LEU LEU A . n A 1 45 THR 45 288 288 THR THR A . n A 1 46 GLU 46 289 289 GLU GLU A . n A 1 47 MET 47 290 290 MET MET A . n A 1 48 ALA 48 291 291 ALA ALA A . n A 1 49 THR 49 292 292 THR THR A . n A 1 50 ASN 50 293 293 ASN ASN A . n A 1 51 HIS 51 294 294 HIS HIS A . n A 1 52 VAL 52 295 295 VAL VAL A . n A 1 53 GLN 53 296 296 GLN GLN A . n A 1 54 VAL 54 297 297 VAL VAL A . n A 1 55 LEU 55 298 298 LEU LEU A . n A 1 56 VAL 56 299 299 VAL VAL A . n A 1 57 GLU 57 300 300 GLU GLU A . n A 1 58 PHE 58 301 301 PHE PHE A . n A 1 59 THR 59 302 302 THR THR A . n A 1 60 LYS 60 303 303 LYS LYS A . n A 1 61 LYS 61 304 304 LYS LYS A . n A 1 62 LEU 62 305 305 LEU LEU A . n A 1 63 PRO 63 306 306 PRO PRO A . n A 1 64 GLY 64 307 307 GLY GLY A . n A 1 65 PHE 65 308 308 PHE PHE A . n A 1 66 GLN 66 309 309 GLN GLN A . n A 1 67 THR 67 310 310 THR THR A . n A 1 68 LEU 68 311 311 LEU LEU A . n A 1 69 ASP 69 312 312 ASP ASP A . n A 1 70 HIS 70 313 313 HIS HIS A . n A 1 71 GLU 71 314 314 GLU GLU A . n A 1 72 ASP 72 315 315 ASP ASP A . n A 1 73 GLN 73 316 316 GLN GLN A . n A 1 74 ILE 74 317 317 ILE ILE A . n A 1 75 ALA 75 318 318 ALA ALA A . n A 1 76 LEU 76 319 319 LEU LEU A . n A 1 77 LEU 77 320 320 LEU LEU A . n A 1 78 LYS 78 321 321 LYS LYS A . n A 1 79 GLY 79 322 322 GLY GLY A . n A 1 80 SER 80 323 323 SER SER A . n A 1 81 ALA 81 324 324 ALA ALA A . n A 1 82 VAL 82 325 325 VAL VAL A . n A 1 83 GLU 83 326 326 GLU GLU A . n A 1 84 ALA 84 327 327 ALA ALA A . n A 1 85 MET 85 328 328 MET MET A . n A 1 86 PHE 86 329 329 PHE PHE A . n A 1 87 LEU 87 330 330 LEU LEU A . n A 1 88 ARG 88 331 331 ARG ARG A . n A 1 89 SER 89 332 332 SER SER A . n A 1 90 ALA 90 333 333 ALA ALA A . n A 1 91 GLU 91 334 334 GLU GLU A . n A 1 92 ILE 92 335 335 ILE ILE A . n A 1 93 PHE 93 336 336 PHE PHE A . n A 1 94 ASN 94 337 337 ASN ASN A . n A 1 95 LYS 95 338 338 LYS LYS A . n A 1 96 LYS 96 339 339 LYS LYS A . n A 1 97 LEU 97 340 340 LEU LEU A . n A 1 98 PRO 98 341 341 PRO PRO A . n A 1 99 SER 99 342 342 SER SER A . n A 1 100 GLY 100 343 343 GLY GLY A . n A 1 101 HIS 101 344 344 HIS HIS A . n A 1 102 SER 102 345 345 SER SER A . n A 1 103 ASP 103 346 346 ASP ASP A . n A 1 104 LEU 104 347 347 LEU LEU A . n A 1 105 LEU 105 348 348 LEU LEU A . n A 1 106 GLU 106 349 349 GLU GLU A . n A 1 107 GLU 107 350 350 GLU GLU A . n A 1 108 ARG 108 351 351 ARG ARG A . n A 1 109 ILE 109 352 352 ILE ILE A . n A 1 110 ARG 110 353 353 ARG ARG A . n A 1 111 ASN 111 354 354 ASN ASN A . n A 1 112 SER 112 355 355 SER SER A . n A 1 113 GLY 113 356 356 GLY GLY A . n A 1 114 ILE 114 357 357 ILE ILE A . n A 1 115 SER 115 358 358 SER SER A . n A 1 116 ASP 116 359 359 ASP ASP A . n A 1 117 GLU 117 360 360 GLU GLU A . n A 1 118 TYR 118 361 361 TYR TYR A . n A 1 119 ILE 119 362 362 ILE ILE A . n A 1 120 THR 120 363 363 THR THR A . n A 1 121 PRO 121 364 364 PRO PRO A . n A 1 122 MET 122 365 365 MET MET A . n A 1 123 PHE 123 366 366 PHE PHE A . n A 1 124 SER 124 367 367 SER SER A . n A 1 125 PHE 125 368 368 PHE PHE A . n A 1 126 TYR 126 369 369 TYR TYR A . n A 1 127 LYS 127 370 370 LYS LYS A . n A 1 128 SER 128 371 371 SER SER A . n A 1 129 ILE 129 372 372 ILE ILE A . n A 1 130 GLY 130 373 373 GLY GLY A . n A 1 131 GLU 131 374 374 GLU GLU A . n A 1 132 LEU 132 375 375 LEU LEU A . n A 1 133 LYS 133 376 376 LYS LYS A . n A 1 134 MET 134 377 377 MET MET A . n A 1 135 THR 135 378 378 THR THR A . n A 1 136 GLN 136 379 379 GLN GLN A . n A 1 137 GLU 137 380 380 GLU GLU A . n A 1 138 GLU 138 381 381 GLU GLU A . n A 1 139 TYR 139 382 382 TYR TYR A . n A 1 140 ALA 140 383 383 ALA ALA A . n A 1 141 LEU 141 384 384 LEU LEU A . n A 1 142 LEU 142 385 385 LEU LEU A . n A 1 143 THR 143 386 386 THR THR A . n A 1 144 ALA 144 387 387 ALA ALA A . n A 1 145 ILE 145 388 388 ILE ILE A . n A 1 146 VAL 146 389 389 VAL VAL A . n A 1 147 ILE 147 390 390 ILE ILE A . n A 1 148 LEU 148 391 391 LEU LEU A . n A 1 149 SER 149 392 392 SER SER A . n A 1 150 PRO 150 393 393 PRO PRO A . n A 1 151 ASP 151 394 394 ASP ASP A . n A 1 152 ARG 152 395 395 ARG ARG A . n A 1 153 GLN 153 396 396 GLN GLN A . n A 1 154 TYR 154 397 397 TYR TYR A . n A 1 155 ILE 155 398 398 ILE ILE A . n A 1 156 LYS 156 399 399 LYS LYS A . n A 1 157 ASP 157 400 400 ASP ASP A . n A 1 158 ARG 158 401 401 ARG ARG A . n A 1 159 GLU 159 402 402 GLU GLU A . n A 1 160 ALA 160 403 403 ALA ALA A . n A 1 161 VAL 161 404 404 VAL VAL A . n A 1 162 GLU 162 405 405 GLU GLU A . n A 1 163 LYS 163 406 406 LYS LYS A . n A 1 164 LEU 164 407 407 LEU LEU A . n A 1 165 GLN 165 408 408 GLN GLN A . n A 1 166 GLU 166 409 409 GLU GLU A . n A 1 167 PRO 167 410 410 PRO PRO A . n A 1 168 LEU 168 411 411 LEU LEU A . n A 1 169 LEU 169 412 412 LEU LEU A . n A 1 170 ASP 170 413 413 ASP ASP A . n A 1 171 VAL 171 414 414 VAL VAL A . n A 1 172 LEU 172 415 415 LEU LEU A . n A 1 173 GLN 173 416 416 GLN GLN A . n A 1 174 LYS 174 417 417 LYS LYS A . n A 1 175 LEU 175 418 418 LEU LEU A . n A 1 176 CYS 176 419 419 CYS CYS A . n A 1 177 LYS 177 420 420 LYS LYS A . n A 1 178 ILE 178 421 421 ILE ILE A . n A 1 179 HIS 179 422 422 HIS HIS A . n A 1 180 GLN 180 423 423 GLN GLN A . n A 1 181 PRO 181 424 424 PRO PRO A . n A 1 182 GLU 182 425 425 GLU GLU A . n A 1 183 ASN 183 426 426 ASN ASN A . n A 1 184 PRO 184 427 427 PRO PRO A . n A 1 185 GLN 185 428 428 GLN GLN A . n A 1 186 HIS 186 429 429 HIS HIS A . n A 1 187 PHE 187 430 430 PHE PHE A . n A 1 188 ALA 188 431 431 ALA ALA A . n A 1 189 CYS 189 432 432 CYS CYS A . n A 1 190 LEU 190 433 433 LEU LEU A . n A 1 191 LEU 191 434 434 LEU LEU A . n A 1 192 GLY 192 435 435 GLY GLY A . n A 1 193 ARG 193 436 436 ARG ARG A . n A 1 194 LEU 194 437 437 LEU LEU A . n A 1 195 THR 195 438 438 THR THR A . n A 1 196 GLU 196 439 439 GLU GLU A . n A 1 197 LEU 197 440 440 LEU LEU A . n A 1 198 ARG 198 441 441 ARG ARG A . n A 1 199 THR 199 442 442 THR THR A . n A 1 200 PHE 200 443 443 PHE PHE A . n A 1 201 ASN 201 444 444 ASN ASN A . n A 1 202 HIS 202 445 445 HIS HIS A . n A 1 203 HIS 203 446 446 HIS HIS A . n A 1 204 HIS 204 447 447 HIS HIS A . n A 1 205 ALA 205 448 448 ALA ALA A . n A 1 206 GLU 206 449 449 GLU GLU A . n A 1 207 MET 207 450 450 MET MET A . n A 1 208 LEU 208 451 451 LEU LEU A . n A 1 209 MET 209 452 452 MET MET A . n A 1 210 SER 210 453 453 SER SER A . n A 1 211 TRP 211 454 454 TRP TRP A . n A 1 212 ARG 212 455 455 ARG ARG A . n A 1 213 VAL 213 456 456 VAL VAL A . n A 1 214 ASN 214 457 457 ASN ASN A . n A 1 215 ASP 215 458 458 ASP ASP A . n A 1 216 HIS 216 459 459 HIS HIS A . n A 1 217 LYS 217 460 460 LYS LYS A . n A 1 218 PHE 218 461 461 PHE PHE A . n A 1 219 THR 219 462 462 THR THR A . n A 1 220 PRO 220 463 463 PRO PRO A . n A 1 221 LEU 221 464 464 LEU LEU A . n A 1 222 LEU 222 465 465 LEU LEU A . n A 1 223 CYS 223 466 466 CYS CYS A . n A 1 224 GLU 224 467 467 GLU GLU A . n A 1 225 ILE 225 468 468 ILE ILE A . n A 1 226 TRP 226 469 469 TRP TRP A . n A 1 227 ASP 227 470 470 ASP ASP A . n A 1 228 VAL 228 471 471 VAL VAL A . n A 1 229 GLN 229 472 472 GLN GLN A . n B 2 1 ASN 1 745 745 ASN ASN B . n B 2 2 GLU 2 746 746 GLU GLU B . n B 2 3 ALA 3 747 747 ALA ALA B . n B 2 4 LEU 4 748 748 LEU LEU B . n B 2 5 LEU 5 749 749 LEU LEU B . n B 2 6 ARG 6 750 750 ARG ARG B . n B 2 7 TYR 7 751 751 TYR TYR B . n B 2 8 LEU 8 752 752 LEU LEU B . n B 2 9 LEU 9 753 753 LEU LEU B . n B 2 10 ASP 10 754 754 ASP ASP B . n B 2 11 LYS 11 755 755 LYS LYS B . n # _pdbx_nonpoly_scheme.asym_id C _pdbx_nonpoly_scheme.entity_id 3 _pdbx_nonpoly_scheme.mon_id 93R _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 501 _pdbx_nonpoly_scheme.auth_seq_num 1 _pdbx_nonpoly_scheme.pdb_mon_id 93R _pdbx_nonpoly_scheme.auth_mon_id FEL _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 B ASP 754 ? CG ? B ASP 10 CG 2 1 Y 1 B ASP 754 ? OD1 ? B ASP 10 OD1 3 1 Y 1 B ASP 754 ? OD2 ? B ASP 10 OD2 # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? SCALEPACK ? ? ? . 1 ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0189 2 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.24 3 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 5 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 5YXD _cell.details ? _cell.formula_units_Z ? _cell.length_a 34.755 _cell.length_a_esd ? _cell.length_b 160.725 _cell.length_b_esd ? _cell.length_c 118.349 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 8 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 5YXD _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5YXD _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.94 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 58.10 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.2M Magnesium chloride hexahydrate, 0.1M Tris pH 8.5, 25% w/v Polyethylene glycol 3350' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 293 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2015-10-07 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.05 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SSRF BEAMLINE BL17U1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.05 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL17U1 _diffrn_source.pdbx_synchrotron_site SSRF # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 5YXD _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.98 _reflns.d_resolution_low 80.36 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 7172 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.6 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 6.5 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 12.3 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 2.98 _reflns_shell.d_res_low 8.0 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.percent_possible_all ? _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] -1.9500 _refine.aniso_B[1][2] -0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][2] -0.5700 _refine.aniso_B[2][3] -0.0000 _refine.aniso_B[3][3] 2.5200 _refine.B_iso_max 95.870 _refine.B_iso_mean 35.4130 _refine.B_iso_min 16.350 _refine.correlation_coeff_Fo_to_Fc 0.8850 _refine.correlation_coeff_Fo_to_Fc_free 0.8650 _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : REFINED INDIVIDUALLY' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 5YXD _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.9800 _refine.ls_d_res_low 80.3600 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 6537 _refine.ls_number_reflns_R_free 371 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 96.3300 _refine.ls_percent_reflns_R_free 5.4000 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2410 _refine.ls_R_factor_R_free 0.2677 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2395 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free 0.4550 _refine.pdbx_solvent_vdw_probe_radii 1.2000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B 16.9430 _refine.overall_SU_ML 0.3120 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.cycle_id final _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.d_res_high 2.9800 _refine_hist.d_res_low 80.3600 _refine_hist.pdbx_number_atoms_ligand 25 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 1997 _refine_hist.pdbx_number_residues_total 240 _refine_hist.pdbx_B_iso_mean_ligand 45.74 _refine_hist.pdbx_number_atoms_protein 1972 _refine_hist.pdbx_number_atoms_nucleic_acid 0 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.016 0.019 2038 ? r_bond_refined_d ? ? 'X-RAY DIFFRACTION' ? 0.007 0.020 1907 ? r_bond_other_d ? ? 'X-RAY DIFFRACTION' ? 2.082 1.985 2753 ? r_angle_refined_deg ? ? 'X-RAY DIFFRACTION' ? 1.138 3.000 4441 ? r_angle_other_deg ? ? 'X-RAY DIFFRACTION' ? 6.610 5.000 238 ? r_dihedral_angle_1_deg ? ? 'X-RAY DIFFRACTION' ? 40.720 25.000 100 ? r_dihedral_angle_2_deg ? ? 'X-RAY DIFFRACTION' ? 20.901 15.000 384 ? r_dihedral_angle_3_deg ? ? 'X-RAY DIFFRACTION' ? 23.181 15.000 10 ? r_dihedral_angle_4_deg ? ? 'X-RAY DIFFRACTION' ? 0.098 0.200 307 ? r_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.008 0.021 2205 ? r_gen_planes_refined ? ? 'X-RAY DIFFRACTION' ? 0.002 0.020 388 ? r_gen_planes_other ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 2.9800 _refine_ls_shell.d_res_low 3.0570 _refine_ls_shell.number_reflns_all 401 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 29 _refine_ls_shell.number_reflns_R_work 372 _refine_ls_shell.percent_reflns_obs 79.7200 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free 0.3370 _refine_ls_shell.R_factor_R_free_error 0.0000 _refine_ls_shell.R_factor_R_work 0.2620 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? # _struct.entry_id 5YXD _struct.title 'A ligand F binding to FXR' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5YXD _struct_keywords.text 'complex, NUCLEAR PROTEIN' _struct_keywords.pdbx_keywords 'NUCLEAR PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP NR1H4_HUMAN Q96RI1 ? 1 ;ELTPDQQTLLHFIMDSYNKQRMPQEITNKILKEEFSAEENFLILTEMATNHVQVLVEFTKKLPGFQTLDHEDQIALLKGS AVEAMFLRSAEIFNKKLPSGHSDLLEERIRNSGISDEYITPMFSFYKSIGELKMTQEEYALLTAIVILSPDRQYIKDREA VEKLQEPLLDVLQKLCKIHQPENPQHFACLLGRLTELRTFNHHHAEMLMSWRVNDHKFTPLLCEIWDVQ ; 258 2 PDB 5YXD 5YXD ? 2 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 5YXD A 1 ? 229 ? Q96RI1 258 ? 486 ? 244 472 2 2 5YXD B 1 ? 11 ? 5YXD 745 ? 755 ? 745 755 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1080 ? 1 MORE -5 ? 1 'SSA (A^2)' 12360 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 THR A 3 ? ASN A 18 ? THR A 246 ASN A 261 1 ? 16 HELX_P HELX_P2 AA2 PRO A 23 ? LYS A 32 ? PRO A 266 LYS A 275 1 ? 10 HELX_P HELX_P3 AA3 SER A 36 ? LEU A 62 ? SER A 279 LEU A 305 1 ? 27 HELX_P HELX_P4 AA4 GLY A 64 ? LEU A 68 ? GLY A 307 LEU A 311 5 ? 5 HELX_P HELX_P5 AA5 ASP A 69 ? ALA A 90 ? ASP A 312 ALA A 333 1 ? 22 HELX_P HELX_P6 AA6 PRO A 98 ? ASN A 111 ? PRO A 341 ASN A 354 1 ? 14 HELX_P HELX_P7 AA7 SER A 115 ? GLU A 131 ? SER A 358 GLU A 374 1 ? 17 HELX_P HELX_P8 AA8 THR A 135 ? LEU A 148 ? THR A 378 LEU A 391 1 ? 14 HELX_P HELX_P9 AA9 ASP A 157 ? GLN A 180 ? ASP A 400 GLN A 423 1 ? 24 HELX_P HELX_P10 AB1 GLN A 185 ? THR A 199 ? GLN A 428 THR A 442 1 ? 15 HELX_P HELX_P11 AB2 THR A 199 ? VAL A 213 ? THR A 442 VAL A 456 1 ? 15 HELX_P HELX_P12 AB3 THR A 219 ? ASP A 227 ? THR A 462 ASP A 470 1 ? 9 HELX_P HELX_P13 AB4 GLU B 2 ? LYS B 11 ? GLU B 746 LYS B 755 1 ? 10 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id 93R _struct_site.pdbx_auth_seq_id 501 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 10 _struct_site.details 'binding site for residue 93R A 501' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 10 LEU A 44 ? LEU A 287 . ? 1_555 ? 2 AC1 10 ALA A 48 ? ALA A 291 . ? 1_555 ? 3 AC1 10 MET A 85 ? MET A 328 . ? 1_555 ? 4 AC1 10 PHE A 86 ? PHE A 329 . ? 1_555 ? 5 AC1 10 SER A 89 ? SER A 332 . ? 1_555 ? 6 AC1 10 MET A 122 ? MET A 365 . ? 1_555 ? 7 AC1 10 HIS A 204 ? HIS A 447 . ? 1_555 ? 8 AC1 10 MET A 207 ? MET A 450 . ? 1_555 ? 9 AC1 10 PHE A 218 ? PHE A 461 . ? 1_555 ? 10 AC1 10 TRP A 226 ? TRP A 469 . ? 1_555 ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 OG A SER 332 ? ? OH A TYR 369 ? ? 1.84 2 1 OE2 A GLU 467 ? ? O B GLU 746 ? ? 2.08 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CB A GLU 334 ? ? CA A GLU 334 ? ? C A GLU 334 ? ? 94.44 110.40 -15.96 2.00 N 2 1 N A ILE 335 ? ? CA A ILE 335 ? ? C A ILE 335 ? ? 89.56 111.00 -21.44 2.70 N 3 1 N A PRO 341 ? ? CA A PRO 341 ? ? C A PRO 341 ? ? 93.20 112.10 -18.90 2.60 N 4 1 CB A LEU 375 ? ? CA A LEU 375 ? ? C A LEU 375 ? ? 97.32 110.20 -12.88 1.90 N 5 1 CA A LEU 375 ? ? CB A LEU 375 ? ? CG A LEU 375 ? ? 133.94 115.30 18.64 2.30 N 6 1 N A ASP 458 ? ? CA A ASP 458 ? ? C A ASP 458 ? ? 130.94 111.00 19.94 2.70 N 7 1 CA A CYS 466 ? ? CB A CYS 466 ? ? SG A CYS 466 ? ? 122.10 114.20 7.90 1.10 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 THR A 246 ? ? -35.64 148.11 2 1 LYS A 272 ? ? -39.23 -37.57 3 1 LYS A 275 ? ? -49.78 -70.39 4 1 SER A 279 ? ? 170.92 166.66 5 1 GLU A 334 ? ? 87.41 8.26 6 1 LYS A 338 ? ? -131.41 -32.47 7 1 LEU A 375 ? ? 72.98 68.24 8 1 LYS A 376 ? ? -60.98 71.23 9 1 LEU A 391 ? ? -97.56 33.22 10 1 PHE A 430 ? ? -38.11 -39.91 11 1 VAL A 456 ? ? -50.36 175.11 12 1 ASN A 457 ? ? 48.37 12.05 13 1 ASP A 458 ? ? 37.74 40.51 14 1 LYS A 460 ? ? 54.29 74.91 15 1 PHE A 461 ? ? -47.47 159.42 16 1 ASP A 470 ? ? 71.57 32.41 17 1 GLU B 746 ? ? 87.33 31.33 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 93R O1 O N N 1 93R O2 O N N 2 93R O3 O N N 3 93R C14 C N N 4 93R C15 C N N 5 93R C6 C Y N 6 93R C5 C Y N 7 93R C16 C N N 8 93R N N Y N 9 93R C4 C Y N 10 93R C17 C N N 11 93R C7 C Y N 12 93R C3 C Y N 13 93R C2 C N N 14 93R O O N N 15 93R C1 C N N 16 93R C C N N 17 93R C8 C Y N 18 93R C13 C Y N 19 93R C12 C Y N 20 93R C11 C Y N 21 93R C10 C Y N 22 93R CL CL N N 23 93R C9 C Y N 24 93R CL1 CL N N 25 93R H1 H N N 26 93R H2 H N N 27 93R H3 H N N 28 93R H4 H N N 29 93R H5 H N N 30 93R H6 H N N 31 93R H7 H N N 32 93R H8 H N N 33 93R H9 H N N 34 93R H10 H N N 35 93R H11 H N N 36 93R H12 H N N 37 93R H13 H N N 38 93R H14 H N N 39 93R H15 H N N 40 93R H16 H N N 41 93R H17 H N N 42 ALA N N N N 43 ALA CA C N S 44 ALA C C N N 45 ALA O O N N 46 ALA CB C N N 47 ALA OXT O N N 48 ALA H H N N 49 ALA H2 H N N 50 ALA HA H N N 51 ALA HB1 H N N 52 ALA HB2 H N N 53 ALA HB3 H N N 54 ALA HXT H N N 55 ARG N N N N 56 ARG CA C N S 57 ARG C C N N 58 ARG O O N N 59 ARG CB C N N 60 ARG CG C N N 61 ARG CD C N N 62 ARG NE N N N 63 ARG CZ C N N 64 ARG NH1 N N N 65 ARG NH2 N N N 66 ARG OXT O N N 67 ARG H H N N 68 ARG H2 H N N 69 ARG HA H N N 70 ARG HB2 H N N 71 ARG HB3 H N N 72 ARG HG2 H N N 73 ARG HG3 H N N 74 ARG HD2 H N N 75 ARG HD3 H N N 76 ARG HE H N N 77 ARG HH11 H N N 78 ARG HH12 H N N 79 ARG HH21 H N N 80 ARG HH22 H N N 81 ARG HXT H N N 82 ASN N N N N 83 ASN CA C N S 84 ASN C C N N 85 ASN O O N N 86 ASN CB C N N 87 ASN CG C N N 88 ASN OD1 O N N 89 ASN ND2 N N N 90 ASN OXT O N N 91 ASN H H N N 92 ASN H2 H N N 93 ASN HA H N N 94 ASN HB2 H N N 95 ASN HB3 H N N 96 ASN HD21 H N N 97 ASN HD22 H N N 98 ASN HXT H N N 99 ASP N N N N 100 ASP CA C N S 101 ASP C C N N 102 ASP O O N N 103 ASP CB C N N 104 ASP CG C N N 105 ASP OD1 O N N 106 ASP OD2 O N N 107 ASP OXT O N N 108 ASP H H N N 109 ASP H2 H N N 110 ASP HA H N N 111 ASP HB2 H N N 112 ASP HB3 H N N 113 ASP HD2 H N N 114 ASP HXT H N N 115 CYS N N N N 116 CYS CA C N R 117 CYS C C N N 118 CYS O O N N 119 CYS CB C N N 120 CYS SG S N N 121 CYS OXT O N N 122 CYS H H N N 123 CYS H2 H N N 124 CYS HA H N N 125 CYS HB2 H N N 126 CYS HB3 H N N 127 CYS HG H N N 128 CYS HXT H N N 129 GLN N N N N 130 GLN CA C N S 131 GLN C C N N 132 GLN O O N N 133 GLN CB C N N 134 GLN CG C N N 135 GLN CD C N N 136 GLN OE1 O N N 137 GLN NE2 N N N 138 GLN OXT O N N 139 GLN H H N N 140 GLN H2 H N N 141 GLN HA H N N 142 GLN HB2 H N N 143 GLN HB3 H N N 144 GLN HG2 H N N 145 GLN HG3 H N N 146 GLN HE21 H N N 147 GLN HE22 H N N 148 GLN HXT H N N 149 GLU N N N N 150 GLU CA C N S 151 GLU C C N N 152 GLU O O N N 153 GLU CB C N N 154 GLU CG C N N 155 GLU CD C N N 156 GLU OE1 O N N 157 GLU OE2 O N N 158 GLU OXT O N N 159 GLU H H N N 160 GLU H2 H N N 161 GLU HA H N N 162 GLU HB2 H N N 163 GLU HB3 H N N 164 GLU HG2 H N N 165 GLU HG3 H N N 166 GLU HE2 H N N 167 GLU HXT H N N 168 GLY N N N N 169 GLY CA C N N 170 GLY C C N N 171 GLY O O N N 172 GLY OXT O N N 173 GLY H H N N 174 GLY H2 H N N 175 GLY HA2 H N N 176 GLY HA3 H N N 177 GLY HXT H N N 178 HIS N N N N 179 HIS CA C N S 180 HIS C C N N 181 HIS O O N N 182 HIS CB C N N 183 HIS CG C Y N 184 HIS ND1 N Y N 185 HIS CD2 C Y N 186 HIS CE1 C Y N 187 HIS NE2 N Y N 188 HIS OXT O N N 189 HIS H H N N 190 HIS H2 H N N 191 HIS HA H N N 192 HIS HB2 H N N 193 HIS HB3 H N N 194 HIS HD1 H N N 195 HIS HD2 H N N 196 HIS HE1 H N N 197 HIS HE2 H N N 198 HIS HXT H N N 199 ILE N N N N 200 ILE CA C N S 201 ILE C C N N 202 ILE O O N N 203 ILE CB C N S 204 ILE CG1 C N N 205 ILE CG2 C N N 206 ILE CD1 C N N 207 ILE OXT O N N 208 ILE H H N N 209 ILE H2 H N N 210 ILE HA H N N 211 ILE HB H N N 212 ILE HG12 H N N 213 ILE HG13 H N N 214 ILE HG21 H N N 215 ILE HG22 H N N 216 ILE HG23 H N N 217 ILE HD11 H N N 218 ILE HD12 H N N 219 ILE HD13 H N N 220 ILE HXT H N N 221 LEU N N N N 222 LEU CA C N S 223 LEU C C N N 224 LEU O O N N 225 LEU CB C N N 226 LEU CG C N N 227 LEU CD1 C N N 228 LEU CD2 C N N 229 LEU OXT O N N 230 LEU H H N N 231 LEU H2 H N N 232 LEU HA H N N 233 LEU HB2 H N N 234 LEU HB3 H N N 235 LEU HG H N N 236 LEU HD11 H N N 237 LEU HD12 H N N 238 LEU HD13 H N N 239 LEU HD21 H N N 240 LEU HD22 H N N 241 LEU HD23 H N N 242 LEU HXT H N N 243 LYS N N N N 244 LYS CA C N S 245 LYS C C N N 246 LYS O O N N 247 LYS CB C N N 248 LYS CG C N N 249 LYS CD C N N 250 LYS CE C N N 251 LYS NZ N N N 252 LYS OXT O N N 253 LYS H H N N 254 LYS H2 H N N 255 LYS HA H N N 256 LYS HB2 H N N 257 LYS HB3 H N N 258 LYS HG2 H N N 259 LYS HG3 H N N 260 LYS HD2 H N N 261 LYS HD3 H N N 262 LYS HE2 H N N 263 LYS HE3 H N N 264 LYS HZ1 H N N 265 LYS HZ2 H N N 266 LYS HZ3 H N N 267 LYS HXT H N N 268 MET N N N N 269 MET CA C N S 270 MET C C N N 271 MET O O N N 272 MET CB C N N 273 MET CG C N N 274 MET SD S N N 275 MET CE C N N 276 MET OXT O N N 277 MET H H N N 278 MET H2 H N N 279 MET HA H N N 280 MET HB2 H N N 281 MET HB3 H N N 282 MET HG2 H N N 283 MET HG3 H N N 284 MET HE1 H N N 285 MET HE2 H N N 286 MET HE3 H N N 287 MET HXT H N N 288 PHE N N N N 289 PHE CA C N S 290 PHE C C N N 291 PHE O O N N 292 PHE CB C N N 293 PHE CG C Y N 294 PHE CD1 C Y N 295 PHE CD2 C Y N 296 PHE CE1 C Y N 297 PHE CE2 C Y N 298 PHE CZ C Y N 299 PHE OXT O N N 300 PHE H H N N 301 PHE H2 H N N 302 PHE HA H N N 303 PHE HB2 H N N 304 PHE HB3 H N N 305 PHE HD1 H N N 306 PHE HD2 H N N 307 PHE HE1 H N N 308 PHE HE2 H N N 309 PHE HZ H N N 310 PHE HXT H N N 311 PRO N N N N 312 PRO CA C N S 313 PRO C C N N 314 PRO O O N N 315 PRO CB C N N 316 PRO CG C N N 317 PRO CD C N N 318 PRO OXT O N N 319 PRO H H N N 320 PRO HA H N N 321 PRO HB2 H N N 322 PRO HB3 H N N 323 PRO HG2 H N N 324 PRO HG3 H N N 325 PRO HD2 H N N 326 PRO HD3 H N N 327 PRO HXT H N N 328 SER N N N N 329 SER CA C N S 330 SER C C N N 331 SER O O N N 332 SER CB C N N 333 SER OG O N N 334 SER OXT O N N 335 SER H H N N 336 SER H2 H N N 337 SER HA H N N 338 SER HB2 H N N 339 SER HB3 H N N 340 SER HG H N N 341 SER HXT H N N 342 THR N N N N 343 THR CA C N S 344 THR C C N N 345 THR O O N N 346 THR CB C N R 347 THR OG1 O N N 348 THR CG2 C N N 349 THR OXT O N N 350 THR H H N N 351 THR H2 H N N 352 THR HA H N N 353 THR HB H N N 354 THR HG1 H N N 355 THR HG21 H N N 356 THR HG22 H N N 357 THR HG23 H N N 358 THR HXT H N N 359 TRP N N N N 360 TRP CA C N S 361 TRP C C N N 362 TRP O O N N 363 TRP CB C N N 364 TRP CG C Y N 365 TRP CD1 C Y N 366 TRP CD2 C Y N 367 TRP NE1 N Y N 368 TRP CE2 C Y N 369 TRP CE3 C Y N 370 TRP CZ2 C Y N 371 TRP CZ3 C Y N 372 TRP CH2 C Y N 373 TRP OXT O N N 374 TRP H H N N 375 TRP H2 H N N 376 TRP HA H N N 377 TRP HB2 H N N 378 TRP HB3 H N N 379 TRP HD1 H N N 380 TRP HE1 H N N 381 TRP HE3 H N N 382 TRP HZ2 H N N 383 TRP HZ3 H N N 384 TRP HH2 H N N 385 TRP HXT H N N 386 TYR N N N N 387 TYR CA C N S 388 TYR C C N N 389 TYR O O N N 390 TYR CB C N N 391 TYR CG C Y N 392 TYR CD1 C Y N 393 TYR CD2 C Y N 394 TYR CE1 C Y N 395 TYR CE2 C Y N 396 TYR CZ C Y N 397 TYR OH O N N 398 TYR OXT O N N 399 TYR H H N N 400 TYR H2 H N N 401 TYR HA H N N 402 TYR HB2 H N N 403 TYR HB3 H N N 404 TYR HD1 H N N 405 TYR HD2 H N N 406 TYR HE1 H N N 407 TYR HE2 H N N 408 TYR HH H N N 409 TYR HXT H N N 410 VAL N N N N 411 VAL CA C N S 412 VAL C C N N 413 VAL O O N N 414 VAL CB C N N 415 VAL CG1 C N N 416 VAL CG2 C N N 417 VAL OXT O N N 418 VAL H H N N 419 VAL H2 H N N 420 VAL HA H N N 421 VAL HB H N N 422 VAL HG11 H N N 423 VAL HG12 H N N 424 VAL HG13 H N N 425 VAL HG21 H N N 426 VAL HG22 H N N 427 VAL HG23 H N N 428 VAL HXT H N N 429 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 93R CL C10 sing N N 1 93R C11 C10 doub Y N 2 93R C11 C12 sing Y N 3 93R C10 C9 sing Y N 4 93R C12 C13 doub Y N 5 93R C15 O3 sing N N 6 93R O3 C14 sing N N 7 93R O2 C14 doub N N 8 93R C9 CL1 sing N N 9 93R C9 C8 doub Y N 10 93R C13 C8 sing Y N 11 93R C14 C6 sing N N 12 93R C8 C7 sing N N 13 93R C6 C7 doub Y N 14 93R C6 C5 sing Y N 15 93R C C1 sing N N 16 93R C7 C3 sing Y N 17 93R C16 C5 sing N N 18 93R C5 N doub Y N 19 93R C3 C2 sing N N 20 93R C3 C4 doub Y N 21 93R C1 O sing N N 22 93R N C4 sing Y N 23 93R C2 O1 doub N N 24 93R C2 O sing N N 25 93R C4 C17 sing N N 26 93R C15 H1 sing N N 27 93R C15 H2 sing N N 28 93R C15 H3 sing N N 29 93R C16 H4 sing N N 30 93R C16 H5 sing N N 31 93R C16 H6 sing N N 32 93R C17 H7 sing N N 33 93R C17 H8 sing N N 34 93R C17 H9 sing N N 35 93R C1 H10 sing N N 36 93R C1 H11 sing N N 37 93R C H12 sing N N 38 93R C H13 sing N N 39 93R C H14 sing N N 40 93R C13 H15 sing N N 41 93R C12 H16 sing N N 42 93R C11 H17 sing N N 43 ALA N CA sing N N 44 ALA N H sing N N 45 ALA N H2 sing N N 46 ALA CA C sing N N 47 ALA CA CB sing N N 48 ALA CA HA sing N N 49 ALA C O doub N N 50 ALA C OXT sing N N 51 ALA CB HB1 sing N N 52 ALA CB HB2 sing N N 53 ALA CB HB3 sing N N 54 ALA OXT HXT sing N N 55 ARG N CA sing N N 56 ARG N H sing N N 57 ARG N H2 sing N N 58 ARG CA C sing N N 59 ARG CA CB sing N N 60 ARG CA HA sing N N 61 ARG C O doub N N 62 ARG C OXT sing N N 63 ARG CB CG sing N N 64 ARG CB HB2 sing N N 65 ARG CB HB3 sing N N 66 ARG CG CD sing N N 67 ARG CG HG2 sing N N 68 ARG CG HG3 sing N N 69 ARG CD NE sing N N 70 ARG CD HD2 sing N N 71 ARG CD HD3 sing N N 72 ARG NE CZ sing N N 73 ARG NE HE sing N N 74 ARG CZ NH1 sing N N 75 ARG CZ NH2 doub N N 76 ARG NH1 HH11 sing N N 77 ARG NH1 HH12 sing N N 78 ARG NH2 HH21 sing N N 79 ARG NH2 HH22 sing N N 80 ARG OXT HXT sing N N 81 ASN N CA sing N N 82 ASN N H sing N N 83 ASN N H2 sing N N 84 ASN CA C sing N N 85 ASN CA CB sing N N 86 ASN CA HA sing N N 87 ASN C O doub N N 88 ASN C OXT sing N N 89 ASN CB CG sing N N 90 ASN CB HB2 sing N N 91 ASN CB HB3 sing N N 92 ASN CG OD1 doub N N 93 ASN CG ND2 sing N N 94 ASN ND2 HD21 sing N N 95 ASN ND2 HD22 sing N N 96 ASN OXT HXT sing N N 97 ASP N CA sing N N 98 ASP N H sing N N 99 ASP N H2 sing N N 100 ASP CA C sing N N 101 ASP CA CB sing N N 102 ASP CA HA sing N N 103 ASP C O doub N N 104 ASP C OXT sing N N 105 ASP CB CG sing N N 106 ASP CB HB2 sing N N 107 ASP CB HB3 sing N N 108 ASP CG OD1 doub N N 109 ASP CG OD2 sing N N 110 ASP OD2 HD2 sing N N 111 ASP OXT HXT sing N N 112 CYS N CA sing N N 113 CYS N H sing N N 114 CYS N H2 sing N N 115 CYS CA C sing N N 116 CYS CA CB sing N N 117 CYS CA HA sing N N 118 CYS C O doub N N 119 CYS C OXT sing N N 120 CYS CB SG sing N N 121 CYS CB HB2 sing N N 122 CYS CB HB3 sing N N 123 CYS SG HG sing N N 124 CYS OXT HXT sing N N 125 GLN N CA sing N N 126 GLN N H sing N N 127 GLN N H2 sing N N 128 GLN CA C sing N N 129 GLN CA CB sing N N 130 GLN CA HA sing N N 131 GLN C O doub N N 132 GLN C OXT sing N N 133 GLN CB CG sing N N 134 GLN CB HB2 sing N N 135 GLN CB HB3 sing N N 136 GLN CG CD sing N N 137 GLN CG HG2 sing N N 138 GLN CG HG3 sing N N 139 GLN CD OE1 doub N N 140 GLN CD NE2 sing N N 141 GLN NE2 HE21 sing N N 142 GLN NE2 HE22 sing N N 143 GLN OXT HXT sing N N 144 GLU N CA sing N N 145 GLU N H sing N N 146 GLU N H2 sing N N 147 GLU CA C sing N N 148 GLU CA CB sing N N 149 GLU CA HA sing N N 150 GLU C O doub N N 151 GLU C OXT sing N N 152 GLU CB CG sing N N 153 GLU CB HB2 sing N N 154 GLU CB HB3 sing N N 155 GLU CG CD sing N N 156 GLU CG HG2 sing N N 157 GLU CG HG3 sing N N 158 GLU CD OE1 doub N N 159 GLU CD OE2 sing N N 160 GLU OE2 HE2 sing N N 161 GLU OXT HXT sing N N 162 GLY N CA sing N N 163 GLY N H sing N N 164 GLY N H2 sing N N 165 GLY CA C sing N N 166 GLY CA HA2 sing N N 167 GLY CA HA3 sing N N 168 GLY C O doub N N 169 GLY C OXT sing N N 170 GLY OXT HXT sing N N 171 HIS N CA sing N N 172 HIS N H sing N N 173 HIS N H2 sing N N 174 HIS CA C sing N N 175 HIS CA CB sing N N 176 HIS CA HA sing N N 177 HIS C O doub N N 178 HIS C OXT sing N N 179 HIS CB CG sing N N 180 HIS CB HB2 sing N N 181 HIS CB HB3 sing N N 182 HIS CG ND1 sing Y N 183 HIS CG CD2 doub Y N 184 HIS ND1 CE1 doub Y N 185 HIS ND1 HD1 sing N N 186 HIS CD2 NE2 sing Y N 187 HIS CD2 HD2 sing N N 188 HIS CE1 NE2 sing Y N 189 HIS CE1 HE1 sing N N 190 HIS NE2 HE2 sing N N 191 HIS OXT HXT sing N N 192 ILE N CA sing N N 193 ILE N H sing N N 194 ILE N H2 sing N N 195 ILE CA C sing N N 196 ILE CA CB sing N N 197 ILE CA HA sing N N 198 ILE C O doub N N 199 ILE C OXT sing N N 200 ILE CB CG1 sing N N 201 ILE CB CG2 sing N N 202 ILE CB HB sing N N 203 ILE CG1 CD1 sing N N 204 ILE CG1 HG12 sing N N 205 ILE CG1 HG13 sing N N 206 ILE CG2 HG21 sing N N 207 ILE CG2 HG22 sing N N 208 ILE CG2 HG23 sing N N 209 ILE CD1 HD11 sing N N 210 ILE CD1 HD12 sing N N 211 ILE CD1 HD13 sing N N 212 ILE OXT HXT sing N N 213 LEU N CA sing N N 214 LEU N H sing N N 215 LEU N H2 sing N N 216 LEU CA C sing N N 217 LEU CA CB sing N N 218 LEU CA HA sing N N 219 LEU C O doub N N 220 LEU C OXT sing N N 221 LEU CB CG sing N N 222 LEU CB HB2 sing N N 223 LEU CB HB3 sing N N 224 LEU CG CD1 sing N N 225 LEU CG CD2 sing N N 226 LEU CG HG sing N N 227 LEU CD1 HD11 sing N N 228 LEU CD1 HD12 sing N N 229 LEU CD1 HD13 sing N N 230 LEU CD2 HD21 sing N N 231 LEU CD2 HD22 sing N N 232 LEU CD2 HD23 sing N N 233 LEU OXT HXT sing N N 234 LYS N CA sing N N 235 LYS N H sing N N 236 LYS N H2 sing N N 237 LYS CA C sing N N 238 LYS CA CB sing N N 239 LYS CA HA sing N N 240 LYS C O doub N N 241 LYS C OXT sing N N 242 LYS CB CG sing N N 243 LYS CB HB2 sing N N 244 LYS CB HB3 sing N N 245 LYS CG CD sing N N 246 LYS CG HG2 sing N N 247 LYS CG HG3 sing N N 248 LYS CD CE sing N N 249 LYS CD HD2 sing N N 250 LYS CD HD3 sing N N 251 LYS CE NZ sing N N 252 LYS CE HE2 sing N N 253 LYS CE HE3 sing N N 254 LYS NZ HZ1 sing N N 255 LYS NZ HZ2 sing N N 256 LYS NZ HZ3 sing N N 257 LYS OXT HXT sing N N 258 MET N CA sing N N 259 MET N H sing N N 260 MET N H2 sing N N 261 MET CA C sing N N 262 MET CA CB sing N N 263 MET CA HA sing N N 264 MET C O doub N N 265 MET C OXT sing N N 266 MET CB CG sing N N 267 MET CB HB2 sing N N 268 MET CB HB3 sing N N 269 MET CG SD sing N N 270 MET CG HG2 sing N N 271 MET CG HG3 sing N N 272 MET SD CE sing N N 273 MET CE HE1 sing N N 274 MET CE HE2 sing N N 275 MET CE HE3 sing N N 276 MET OXT HXT sing N N 277 PHE N CA sing N N 278 PHE N H sing N N 279 PHE N H2 sing N N 280 PHE CA C sing N N 281 PHE CA CB sing N N 282 PHE CA HA sing N N 283 PHE C O doub N N 284 PHE C OXT sing N N 285 PHE CB CG sing N N 286 PHE CB HB2 sing N N 287 PHE CB HB3 sing N N 288 PHE CG CD1 doub Y N 289 PHE CG CD2 sing Y N 290 PHE CD1 CE1 sing Y N 291 PHE CD1 HD1 sing N N 292 PHE CD2 CE2 doub Y N 293 PHE CD2 HD2 sing N N 294 PHE CE1 CZ doub Y N 295 PHE CE1 HE1 sing N N 296 PHE CE2 CZ sing Y N 297 PHE CE2 HE2 sing N N 298 PHE CZ HZ sing N N 299 PHE OXT HXT sing N N 300 PRO N CA sing N N 301 PRO N CD sing N N 302 PRO N H sing N N 303 PRO CA C sing N N 304 PRO CA CB sing N N 305 PRO CA HA sing N N 306 PRO C O doub N N 307 PRO C OXT sing N N 308 PRO CB CG sing N N 309 PRO CB HB2 sing N N 310 PRO CB HB3 sing N N 311 PRO CG CD sing N N 312 PRO CG HG2 sing N N 313 PRO CG HG3 sing N N 314 PRO CD HD2 sing N N 315 PRO CD HD3 sing N N 316 PRO OXT HXT sing N N 317 SER N CA sing N N 318 SER N H sing N N 319 SER N H2 sing N N 320 SER CA C sing N N 321 SER CA CB sing N N 322 SER CA HA sing N N 323 SER C O doub N N 324 SER C OXT sing N N 325 SER CB OG sing N N 326 SER CB HB2 sing N N 327 SER CB HB3 sing N N 328 SER OG HG sing N N 329 SER OXT HXT sing N N 330 THR N CA sing N N 331 THR N H sing N N 332 THR N H2 sing N N 333 THR CA C sing N N 334 THR CA CB sing N N 335 THR CA HA sing N N 336 THR C O doub N N 337 THR C OXT sing N N 338 THR CB OG1 sing N N 339 THR CB CG2 sing N N 340 THR CB HB sing N N 341 THR OG1 HG1 sing N N 342 THR CG2 HG21 sing N N 343 THR CG2 HG22 sing N N 344 THR CG2 HG23 sing N N 345 THR OXT HXT sing N N 346 TRP N CA sing N N 347 TRP N H sing N N 348 TRP N H2 sing N N 349 TRP CA C sing N N 350 TRP CA CB sing N N 351 TRP CA HA sing N N 352 TRP C O doub N N 353 TRP C OXT sing N N 354 TRP CB CG sing N N 355 TRP CB HB2 sing N N 356 TRP CB HB3 sing N N 357 TRP CG CD1 doub Y N 358 TRP CG CD2 sing Y N 359 TRP CD1 NE1 sing Y N 360 TRP CD1 HD1 sing N N 361 TRP CD2 CE2 doub Y N 362 TRP CD2 CE3 sing Y N 363 TRP NE1 CE2 sing Y N 364 TRP NE1 HE1 sing N N 365 TRP CE2 CZ2 sing Y N 366 TRP CE3 CZ3 doub Y N 367 TRP CE3 HE3 sing N N 368 TRP CZ2 CH2 doub Y N 369 TRP CZ2 HZ2 sing N N 370 TRP CZ3 CH2 sing Y N 371 TRP CZ3 HZ3 sing N N 372 TRP CH2 HH2 sing N N 373 TRP OXT HXT sing N N 374 TYR N CA sing N N 375 TYR N H sing N N 376 TYR N H2 sing N N 377 TYR CA C sing N N 378 TYR CA CB sing N N 379 TYR CA HA sing N N 380 TYR C O doub N N 381 TYR C OXT sing N N 382 TYR CB CG sing N N 383 TYR CB HB2 sing N N 384 TYR CB HB3 sing N N 385 TYR CG CD1 doub Y N 386 TYR CG CD2 sing Y N 387 TYR CD1 CE1 sing Y N 388 TYR CD1 HD1 sing N N 389 TYR CD2 CE2 doub Y N 390 TYR CD2 HD2 sing N N 391 TYR CE1 CZ doub Y N 392 TYR CE1 HE1 sing N N 393 TYR CE2 CZ sing Y N 394 TYR CE2 HE2 sing N N 395 TYR CZ OH sing N N 396 TYR OH HH sing N N 397 TYR OXT HXT sing N N 398 VAL N CA sing N N 399 VAL N H sing N N 400 VAL N H2 sing N N 401 VAL CA C sing N N 402 VAL CA CB sing N N 403 VAL CA HA sing N N 404 VAL C O doub N N 405 VAL C OXT sing N N 406 VAL CB CG1 sing N N 407 VAL CB CG2 sing N N 408 VAL CB HB sing N N 409 VAL CG1 HG11 sing N N 410 VAL CG1 HG12 sing N N 411 VAL CG1 HG13 sing N N 412 VAL CG2 HG21 sing N N 413 VAL CG2 HG22 sing N N 414 VAL CG2 HG23 sing N N 415 VAL OXT HXT sing N N 416 # _atom_sites.entry_id 5YXD _atom_sites.fract_transf_matrix[1][1] 0.028773 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.006222 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008450 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C CL N O S # loop_