HEADER CELL ADHESION 05-DEC-17 5YXG TITLE CRYSTAL STRUCTURE OF C-TERMINAL FRAGMENT OF SPAD FROM LACTOBACILLUS TITLE 2 RHAMNOSUS GG GENERATED BY LIMITED PROTEOLYSIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PILUS ASSEMBLY PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: SPAD; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: THE SME 244 AND SME 275 IN CHAIN A ARE RADIATION COMPND 7 INDUCED MODIFICATION OF METHIONINE; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: PILUS ASSEMBLY PROTEIN; COMPND 10 CHAIN: B; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LACTOBACILLUS RHAMNOSUS GG; SOURCE 3 ORGANISM_TAXID: 568703; SOURCE 4 STRAIN: GG; SOURCE 5 GENE: CCE29_10230, PY66_09460; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VARIANT: PLYSS; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: LACTOBACILLUS RHAMNOSUS GG; SOURCE 12 ORGANISM_TAXID: 568703; SOURCE 13 STRAIN: GG; SOURCE 14 GENE: CCE29_10230, PY66_09460; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 16 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 17 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 18 EXPRESSION_SYSTEM_VARIANT: PLYSS KEYWDS PILIN, SPAD, PROBIOTIC, ISOPEPTIDE, SPAFED PILI, ADHESIN, CELL KEYWDS 2 ADHESION EXPDTA X-RAY DIFFRACTION AUTHOR P.CHAURASIA,S.PRATAP,A.PALVA,I.VON OSSOWSKI,V.KRISHNAN REVDAT 4 22-NOV-23 5YXG 1 REMARK REVDAT 3 17-OCT-18 5YXG 1 JRNL REVDAT 2 01-AUG-18 5YXG 1 JRNL REVDAT 1 20-JUN-18 5YXG 0 JRNL AUTH P.CHAURASIA,S.PRATAP,A.PALVA,I.VON OSSOWSKI,V.KRISHNAN JRNL TITL BENT CONFORMATION OF A BACKBONE PILIN N-TERMINAL DOMAIN JRNL TITL 2 SUPPORTS A THREE-STAGE PILUS ASSEMBLY MECHANISM. JRNL REF COMMUN BIOL V. 1 94 2018 JRNL REFN ESSN 2399-3642 JRNL PMID 30271975 JRNL DOI 10.1038/S42003-018-0100-0 REMARK 2 REMARK 2 RESOLUTION. 1.48 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0189 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.48 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 72.66 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 99221 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.195 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5220 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.48 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.52 REMARK 3 REFLECTION IN BIN (WORKING SET) : 7213 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.06 REMARK 3 BIN R VALUE (WORKING SET) : 0.2930 REMARK 3 BIN FREE R VALUE SET COUNT : 395 REMARK 3 BIN FREE R VALUE : 0.3180 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4580 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 781 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.61 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.01000 REMARK 3 B22 (A**2) : 0.05000 REMARK 3 B33 (A**2) : 0.96000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.070 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.069 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.052 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.747 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.958 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4710 ; 0.012 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 4306 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6408 ; 1.201 ; 1.951 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10007 ; 0.624 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 601 ; 6.996 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 203 ;33.231 ;25.369 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 767 ;10.402 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ; 9.084 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 752 ; 0.081 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5277 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 911 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2404 ; 1.059 ; 1.397 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2403 ; 1.057 ; 1.397 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3005 ; 1.701 ; 2.089 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3006 ; 1.701 ; 2.089 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2306 ; 1.765 ; 1.617 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2306 ; 1.764 ; 1.617 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3403 ; 2.705 ; 2.347 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5289 ; 5.260 ;19.058 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 5050 ; 4.906 ;17.677 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 184 480 B 184 480 17346 0.11 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 184 A 358 REMARK 3 RESIDUE RANGE : A 359 A 481 REMARK 3 ORIGIN FOR THE GROUP (A): -19.1210 -8.1170 8.5740 REMARK 3 T TENSOR REMARK 3 T11: 0.0257 T22: 0.0240 REMARK 3 T33: 0.0061 T12: 0.0107 REMARK 3 T13: -0.0035 T23: -0.0002 REMARK 3 L TENSOR REMARK 3 L11: 0.2984 L22: 0.1485 REMARK 3 L33: 0.1963 L12: -0.1792 REMARK 3 L13: 0.2253 L23: -0.1436 REMARK 3 S TENSOR REMARK 3 S11: -0.0163 S12: -0.0073 S13: 0.0252 REMARK 3 S21: 0.0059 S22: -0.0126 S23: -0.0199 REMARK 3 S31: -0.0232 S32: -0.0077 S33: 0.0289 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 177 B 358 REMARK 3 RESIDUE RANGE : B 359 B 486 REMARK 3 ORIGIN FOR THE GROUP (A): -9.2280 -15.7970 45.6980 REMARK 3 T TENSOR REMARK 3 T11: 0.0217 T22: 0.0335 REMARK 3 T33: 0.0097 T12: -0.0185 REMARK 3 T13: -0.0054 T23: -0.0065 REMARK 3 L TENSOR REMARK 3 L11: 0.3221 L22: 0.3302 REMARK 3 L33: 0.0324 L12: 0.3199 REMARK 3 L13: 0.0964 L23: 0.1002 REMARK 3 S TENSOR REMARK 3 S11: 0.0079 S12: -0.0005 S13: -0.0256 REMARK 3 S21: 0.0181 S22: 0.0024 S23: -0.0346 REMARK 3 S31: 0.0109 S32: -0.0066 S33: -0.0103 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.00 REMARK 3 ION PROBE RADIUS : 0.70 REMARK 3 SHRINKAGE RADIUS : 0.70 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5YXG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-MAR-18. REMARK 100 THE DEPOSITION ID IS D_1300006043. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-APR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95371 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 104530 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.480 REMARK 200 RESOLUTION RANGE LOW (A) : 72.660 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 5.300 REMARK 200 R MERGE (I) : 0.06300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.48 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.62 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 5.20 REMARK 200 R MERGE FOR SHELL (I) : 0.53600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: AUTOSHARP REMARK 200 STARTING MODEL: 5YU5 REMARK 200 REMARK 200 REMARK: THREE DIMENSION RODS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM CHLORIDE 20% W/V PEG REMARK 280 3350, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.05300 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 74.70150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.58000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 74.70150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.05300 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.58000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13920 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 140 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15700 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 177 REMARK 465 TYR A 178 REMARK 465 PRO A 179 REMARK 465 LYS A 180 REMARK 465 ASP A 181 REMARK 465 SER A 182 REMARK 465 LEU A 183 REMARK 465 ASP A 227 REMARK 465 HIS A 228 REMARK 465 SER A 229 REMARK 465 GLN A 230 REMARK 465 ASP A 231 REMARK 465 PRO A 345 REMARK 465 ASP A 346 REMARK 465 SER A 347 REMARK 465 GLN A 482 REMARK 465 LEU A 483 REMARK 465 LEU A 484 REMARK 465 PRO A 485 REMARK 465 LEU A 486 REMARK 465 GLU A 487 REMARK 465 HIS A 488 REMARK 465 HIS A 489 REMARK 465 HIS A 490 REMARK 465 HIS A 491 REMARK 465 HIS A 492 REMARK 465 HIS A 493 REMARK 465 ASP B 344 REMARK 465 PRO B 345 REMARK 465 ASP B 346 REMARK 465 SER B 347 REMARK 465 GLU B 487 REMARK 465 HIS B 488 REMARK 465 HIS B 489 REMARK 465 HIS B 490 REMARK 465 HIS B 491 REMARK 465 HIS B 492 REMARK 465 HIS B 493 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS B 239 CG CD CE NZ REMARK 470 GLN B 283 CG CD OE1 NE2 REMARK 470 ASP B 456 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 252 -68.60 -107.15 REMARK 500 PHE B 238 89.97 -155.11 REMARK 500 LYS B 252 -68.95 -107.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 973 DISTANCE = 6.06 ANGSTROMS REMARK 525 HOH A 974 DISTANCE = 6.16 ANGSTROMS REMARK 525 HOH A 975 DISTANCE = 6.21 ANGSTROMS REMARK 525 HOH B1003 DISTANCE = 6.22 ANGSTROMS REMARK 525 HOH B1004 DISTANCE = 6.24 ANGSTROMS REMARK 525 HOH B1005 DISTANCE = 6.29 ANGSTROMS REMARK 525 HOH B1006 DISTANCE = 6.38 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 503 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5YU5 RELATED DB: PDB REMARK 900 FULL-LENGTH STRUCTURE OF GG-SPAD PROTEIN DBREF1 5YXG A 177 485 UNP A0A179XFF5_LACRH DBREF2 5YXG A A0A179XFF5 177 485 DBREF1 5YXG B 177 485 UNP A0A179XFF5_LACRH DBREF2 5YXG B A0A179XFF5 177 485 SEQADV 5YXG LEU A 486 UNP A0A179XFF EXPRESSION TAG SEQADV 5YXG GLU A 487 UNP A0A179XFF EXPRESSION TAG SEQADV 5YXG HIS A 488 UNP A0A179XFF EXPRESSION TAG SEQADV 5YXG HIS A 489 UNP A0A179XFF EXPRESSION TAG SEQADV 5YXG HIS A 490 UNP A0A179XFF EXPRESSION TAG SEQADV 5YXG HIS A 491 UNP A0A179XFF EXPRESSION TAG SEQADV 5YXG HIS A 492 UNP A0A179XFF EXPRESSION TAG SEQADV 5YXG HIS A 493 UNP A0A179XFF EXPRESSION TAG SEQADV 5YXG LEU B 486 UNP A0A179XFF EXPRESSION TAG SEQADV 5YXG GLU B 487 UNP A0A179XFF EXPRESSION TAG SEQADV 5YXG HIS B 488 UNP A0A179XFF EXPRESSION TAG SEQADV 5YXG HIS B 489 UNP A0A179XFF EXPRESSION TAG SEQADV 5YXG HIS B 490 UNP A0A179XFF EXPRESSION TAG SEQADV 5YXG HIS B 491 UNP A0A179XFF EXPRESSION TAG SEQADV 5YXG HIS B 492 UNP A0A179XFF EXPRESSION TAG SEQADV 5YXG HIS B 493 UNP A0A179XFF EXPRESSION TAG SEQRES 1 A 317 LEU TYR PRO LYS ASP SER LEU VAL THR LYS ASN LEU THR SEQRES 2 A 317 GLU ILE ASN GLU GLN ALA VAL ALA THR LYS ASP LEU HIS SEQRES 3 A 317 ASP VAL ALA VAL GLY ASP VAL LEU THR TYR GLN VAL GLN SEQRES 4 A 317 PHE GLN ILE PRO HIS ASP ILE GLY ALA LEU ALA ASP HIS SEQRES 5 A 317 SER GLN ASP THR PHE LYS TYR ASN GLN PHE LYS VAL LEU SEQRES 6 A 317 ASP TYR SME THR LYS GLU GLY LEU THR PHE LYS ALA LEU SEQRES 7 A 317 THR ALA ILE THR VAL ASP GLY GLN ASP ILE LEU LYS ALA SEQRES 8 A 317 LEU THR GLY LYS MET ALA PHE SME SER SER ASN ASP ALA SEQRES 9 A 317 ALA TRP GLN GLN THR HIS ASN TYR PRO PHE GLY PHE GLU SEQRES 10 A 317 LEU ASP PHE LEU GLY GLY THR ASP PRO ASP ALA VAL ARG SEQRES 11 A 317 ASN LEU LEU THR GLN TYR ALA GLY LYS ARG VAL THR VAL SEQRES 12 A 317 ALA TYR THR GLY ILE VAL ASN GLU LYS MET ILE PRO ASP SEQRES 13 A 317 GLN LYS VAL GLY ASN THR ALA GLU VAL SER PHE ASP PRO SEQRES 14 A 317 ASP SER LYS ILE THR VAL ASN GLY PRO GLU ILE GLN THR SEQRES 15 A 317 GLY GLY ILE ARG PHE PHE LYS HIS GLU ALA GLY SER SER SEQRES 16 A 317 LYS SER LEU ALA ASN ALA THR PHE ILE LEU GLN ARG MET SEQRES 17 A 317 ASN GLY ASN VAL ARG GLU TYR ALA VAL LEU GLU GLY VAL SEQRES 18 A 317 ASN GLY MET ALA GLY THR TYR GLN PRO THR LYS ILE THR SEQRES 19 A 317 TRP THR THR ASN GLN ASP ALA ALA THR ARG LEU LYS THR SEQRES 20 A 317 SER GLY ALA GLU THR ALA ASN LEU THR ILE GLN GLY LEU SEQRES 21 A 317 LEU PRO GLY ARG TYR THR LEU VAL GLU THR ALA ALA PRO SEQRES 22 A 317 GLU GLY TYR GLU ILE LEU ASP PRO THR THR ASP PHE GLU SEQRES 23 A 317 VAL ILE ALA GLY THR TRP GLY THR LYS THR ILE ARG ILE SEQRES 24 A 317 ALA ASN THR PRO VAL ASN GLN LEU LEU PRO LEU GLU HIS SEQRES 25 A 317 HIS HIS HIS HIS HIS SEQRES 1 B 317 LEU TYR PRO LYS ASP SER LEU VAL THR LYS ASN LEU THR SEQRES 2 B 317 GLU ILE ASN GLU GLN ALA VAL ALA THR LYS ASP LEU HIS SEQRES 3 B 317 ASP VAL ALA VAL GLY ASP VAL LEU THR TYR GLN VAL GLN SEQRES 4 B 317 PHE GLN ILE PRO HIS ASP ILE GLY ALA LEU ALA ASP HIS SEQRES 5 B 317 SER GLN ASP THR PHE LYS TYR ASN GLN PHE LYS VAL LEU SEQRES 6 B 317 ASP TYR MET THR LYS GLU GLY LEU THR PHE LYS ALA LEU SEQRES 7 B 317 THR ALA ILE THR VAL ASP GLY GLN ASP ILE LEU LYS ALA SEQRES 8 B 317 LEU THR GLY LYS MET ALA PHE MET SER SER ASN ASP ALA SEQRES 9 B 317 ALA TRP GLN GLN THR HIS ASN TYR PRO PHE GLY PHE GLU SEQRES 10 B 317 LEU ASP PHE LEU GLY GLY THR ASP PRO ASP ALA VAL ARG SEQRES 11 B 317 ASN LEU LEU THR GLN TYR ALA GLY LYS ARG VAL THR VAL SEQRES 12 B 317 ALA TYR THR GLY ILE VAL ASN GLU LYS MET ILE PRO ASP SEQRES 13 B 317 GLN LYS VAL GLY ASN THR ALA GLU VAL SER PHE ASP PRO SEQRES 14 B 317 ASP SER LYS ILE THR VAL ASN GLY PRO GLU ILE GLN THR SEQRES 15 B 317 GLY GLY ILE ARG PHE PHE LYS HIS GLU ALA GLY SER SER SEQRES 16 B 317 LYS SER LEU ALA ASN ALA THR PHE ILE LEU GLN ARG MET SEQRES 17 B 317 ASN GLY ASN VAL ARG GLU TYR ALA VAL LEU GLU GLY VAL SEQRES 18 B 317 ASN GLY MET ALA GLY THR TYR GLN PRO THR LYS ILE THR SEQRES 19 B 317 TRP THR THR ASN GLN ASP ALA ALA THR ARG LEU LYS THR SEQRES 20 B 317 SER GLY ALA GLU THR ALA ASN LEU THR ILE GLN GLY LEU SEQRES 21 B 317 LEU PRO GLY ARG TYR THR LEU VAL GLU THR ALA ALA PRO SEQRES 22 B 317 GLU GLY TYR GLU ILE LEU ASP PRO THR THR ASP PHE GLU SEQRES 23 B 317 VAL ILE ALA GLY THR TRP GLY THR LYS THR ILE ARG ILE SEQRES 24 B 317 ALA ASN THR PRO VAL ASN GLN LEU LEU PRO LEU GLU HIS SEQRES 25 B 317 HIS HIS HIS HIS HIS MODRES 5YXG SME A 244 MET MODIFIED RESIDUE MODRES 5YXG SME A 275 MET MODIFIED RESIDUE HET SME A 244 9 HET SME A 275 9 HET CL A 501 1 HET CL B 501 1 HET CL B 502 1 HET CL B 503 1 HETNAM SME METHIONINE SULFOXIDE HETNAM CL CHLORIDE ION FORMUL 1 SME 2(C5 H11 N O3 S) FORMUL 3 CL 4(CL 1-) FORMUL 7 HOH *781(H2 O) HELIX 1 AA1 ILE A 264 THR A 269 1 6 HELIX 2 AA2 ALA A 281 HIS A 286 1 6 HELIX 3 AA3 ASP A 301 GLN A 311 1 11 HELIX 4 AA4 ASN A 414 ALA A 418 5 5 HELIX 5 AA5 ILE B 264 THR B 269 1 6 HELIX 6 AA6 ALA B 281 HIS B 286 1 6 HELIX 7 AA7 ASP B 301 GLN B 311 1 11 HELIX 8 AA8 ASN B 414 ALA B 418 5 5 HELIX 9 AA9 ASN B 481 LEU B 483 5 3 SHEET 1 AA1 6 GLN A 194 ALA A 195 0 SHEET 2 AA1 6 THR A 185 ILE A 191 -1 N ILE A 191 O GLN A 194 SHEET 3 AA1 6 VAL A 209 GLN A 217 -1 O THR A 211 N GLU A 190 SHEET 4 AA1 6 ARG A 316 VAL A 325 -1 O GLY A 323 N LEU A 210 SHEET 5 AA1 6 LEU A 249 VAL A 259 -1 N ALA A 256 O ALA A 320 SHEET 6 AA1 6 GLN A 262 ASP A 263 -1 O GLN A 262 N VAL A 259 SHEET 1 AA2 2 LEU A 201 ASP A 203 0 SHEET 2 AA2 2 GLU A 355 GLN A 357 1 O GLU A 355 N HIS A 202 SHEET 1 AA3 5 ALA A 273 SER A 276 0 SHEET 2 AA3 5 PHE A 290 ASP A 295 -1 O ASP A 295 N ALA A 273 SHEET 3 AA3 5 LYS A 239 SME A 244 -1 N VAL A 240 O LEU A 294 SHEET 4 AA3 5 THR A 338 SER A 342 -1 O GLU A 340 N LEU A 241 SHEET 5 AA3 5 ILE A 349 ASN A 352 -1 O VAL A 351 N ALA A 339 SHEET 1 AA4 5 THR A 403 TYR A 404 0 SHEET 2 AA4 5 LEU A 431 LEU A 436 1 O THR A 432 N TYR A 404 SHEET 3 AA4 5 GLY A 359 GLU A 367 -1 N PHE A 363 O LEU A 431 SHEET 4 AA4 5 ILE A 473 PRO A 479 1 O ILE A 473 N ARG A 362 SHEET 5 AA4 5 TYR A 452 ILE A 454 -1 N GLU A 453 O THR A 478 SHEET 1 AA5 4 LYS A 408 THR A 412 0 SHEET 2 AA5 4 VAL A 388 GLU A 395 -1 N VAL A 393 O THR A 410 SHEET 3 AA5 4 THR A 378 ASN A 385 -1 N ASN A 385 O VAL A 388 SHEET 4 AA5 4 LEU A 421 LYS A 422 -1 O LEU A 421 N PHE A 379 SHEET 1 AA6 5 LYS A 408 THR A 412 0 SHEET 2 AA6 5 VAL A 388 GLU A 395 -1 N VAL A 393 O THR A 410 SHEET 3 AA6 5 THR A 378 ASN A 385 -1 N ASN A 385 O VAL A 388 SHEET 4 AA6 5 GLY A 439 ALA A 447 -1 O ALA A 447 N THR A 378 SHEET 5 AA6 5 THR A 458 VAL A 463 -1 O THR A 459 N LEU A 443 SHEET 1 AA7 6 GLN B 194 ALA B 195 0 SHEET 2 AA7 6 VAL B 184 ILE B 191 -1 N ILE B 191 O GLN B 194 SHEET 3 AA7 6 VAL B 209 GLN B 217 -1 O THR B 211 N GLU B 190 SHEET 4 AA7 6 ARG B 316 VAL B 325 -1 O VAL B 317 N PHE B 216 SHEET 5 AA7 6 LEU B 249 VAL B 259 -1 N ALA B 256 O ALA B 320 SHEET 6 AA7 6 GLN B 262 ASP B 263 -1 O GLN B 262 N VAL B 259 SHEET 1 AA8 2 LEU B 201 ASP B 203 0 SHEET 2 AA8 2 GLU B 355 GLN B 357 1 O GLU B 355 N HIS B 202 SHEET 1 AA9 5 ALA B 273 SER B 276 0 SHEET 2 AA9 5 PHE B 290 ASP B 295 -1 O GLU B 293 N MET B 275 SHEET 3 AA9 5 LYS B 239 MET B 244 -1 N VAL B 240 O LEU B 294 SHEET 4 AA9 5 THR B 338 SER B 342 -1 O GLU B 340 N LEU B 241 SHEET 5 AA9 5 ILE B 349 ASN B 352 -1 O VAL B 351 N ALA B 339 SHEET 1 AB1 5 THR B 403 TYR B 404 0 SHEET 2 AB1 5 LEU B 431 LEU B 436 1 O THR B 432 N TYR B 404 SHEET 3 AB1 5 GLY B 359 GLU B 367 -1 N PHE B 363 O LEU B 431 SHEET 4 AB1 5 ILE B 473 PRO B 479 1 O ILE B 473 N ARG B 362 SHEET 5 AB1 5 TYR B 452 GLU B 453 -1 N GLU B 453 O THR B 478 SHEET 1 AB2 4 LYS B 408 THR B 412 0 SHEET 2 AB2 4 VAL B 388 GLU B 395 -1 N VAL B 393 O THR B 410 SHEET 3 AB2 4 THR B 378 ASN B 385 -1 N ASN B 385 O VAL B 388 SHEET 4 AB2 4 LEU B 421 LYS B 422 -1 O LEU B 421 N PHE B 379 SHEET 1 AB3 5 LYS B 408 THR B 412 0 SHEET 2 AB3 5 VAL B 388 GLU B 395 -1 N VAL B 393 O THR B 410 SHEET 3 AB3 5 THR B 378 ASN B 385 -1 N ASN B 385 O VAL B 388 SHEET 4 AB3 5 GLY B 439 ALA B 447 -1 O VAL B 444 N ILE B 380 SHEET 5 AB3 5 THR B 458 VAL B 463 -1 O THR B 459 N LEU B 443 LINK NZ LYS A 186 CG ASN A 337 1555 1555 1.33 LINK C TYR A 243 N SME A 244 1555 1555 1.33 LINK C SME A 244 N THR A 245 1555 1555 1.32 LINK C PHE A 274 N SME A 275 1555 1555 1.33 LINK C SME A 275 N SER A 276 1555 1555 1.33 LINK NZ LYS A 365 CG ASN A 477 1555 1555 1.34 LINK NZ LYS B 186 CG ASN B 337 1555 1555 1.30 LINK NZ LYS B 365 CG ASN B 477 1555 1555 1.33 SITE 1 AC1 5 GLN A 382 ARG A 383 THR A 442 HOH A 910 SITE 2 AC1 5 HOH B 606 SITE 1 AC2 4 GLN B 382 ARG B 383 MET B 384 THR B 442 SITE 1 AC3 4 LYS A 334 PRO B 302 ASP B 303 HOH B 859 SITE 1 AC4 6 GLN B 237 PHE B 238 ASP B 295 LEU B 297 SITE 2 AC4 6 GLY B 298 HOH B 840 CRYST1 50.106 83.160 149.403 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019958 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012025 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006693 0.00000