HEADER DE NOVO PROTEIN 05-DEC-17 5YXI TITLE DESIGNED PROTEIN DRAFX6 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DESIGNED PROTEIN DRAFX6; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 3 ORGANISM_TAXID: 32630; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DESIGNED PROTEIN, DE NOVO PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR R.LIU REVDAT 3 14-JUN-23 5YXI 1 REMARK REVDAT 2 23-FEB-22 5YXI 1 COMPND JRNL REMARK REVDAT 1 05-DEC-18 5YXI 0 JRNL AUTH R.LIU,J.WANG,P.XIONG,Q.CHEN,H.LIU JRNL TITL DE NOVO SEQUENCE REDESIGN OF A FUNCTIONAL RAS-BINDING DOMAIN JRNL TITL 2 GLOBALLY INVERTED THE SURFACE CHARGE DISTRIBUTION AND LED TO JRNL TITL 3 EXTREME THERMOSTABILITY. JRNL REF BIOTECHNOL.BIOENG. V. 118 2031 2021 JRNL REFN ESSN 1097-0290 JRNL PMID 33590881 JRNL DOI 10.1002/BIT.27716 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA REMARK 3 AUTHORS : GUNTERT P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5YXI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-DEC-17. REMARK 100 THE DEPOSITION ID IS D_1300006039. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 0.05 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.02 MM SODIUM PHOSPHATE, 0.01 REMARK 210 MM EDTA, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D 1H-15N TOCSY; REMARK 210 3D CBCA(CO)NH; 3D C(CO)NH; 3D REMARK 210 HNCACB; 3D HBHA(CO)NH; 3D HN(CO) REMARK 210 CA; 3D H(CCO)NH; 3D 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : DMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA, SPARKY REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 1000 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 5560 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 2 -77.06 69.09 REMARK 500 1 ARG A 4 53.62 -104.55 REMARK 500 1 ASN A 12 31.92 87.44 REMARK 500 1 LEU A 50 -74.66 -126.98 REMARK 500 1 SER A 51 -74.59 -179.59 REMARK 500 1 ALA A 56 101.34 61.46 REMARK 500 1 GLU A 57 93.95 62.84 REMARK 500 1 LEU A 69 39.59 -146.45 REMARK 500 2 ASN A 12 31.23 86.43 REMARK 500 2 LEU A 50 -72.55 -111.50 REMARK 500 2 SER A 51 -61.08 -179.51 REMARK 500 2 ASP A 53 -64.49 -99.43 REMARK 500 2 GLU A 57 100.30 -176.74 REMARK 500 2 LEU A 69 56.55 -143.06 REMARK 500 3 ASN A 12 31.43 85.21 REMARK 500 3 PRO A 22 88.60 -69.77 REMARK 500 3 SER A 51 25.30 -153.66 REMARK 500 3 ASP A 53 39.24 -179.16 REMARK 500 3 ALA A 56 112.65 65.09 REMARK 500 3 GLU A 57 92.24 58.35 REMARK 500 3 LEU A 69 54.58 -144.18 REMARK 500 4 ALA A 2 -175.10 63.11 REMARK 500 4 ASN A 12 30.45 87.82 REMARK 500 4 LEU A 50 -73.87 -122.07 REMARK 500 4 SER A 51 -72.44 -179.35 REMARK 500 4 ALA A 56 102.80 62.20 REMARK 500 4 GLU A 57 93.87 63.30 REMARK 500 4 LEU A 69 44.41 -154.01 REMARK 500 5 ASP A 3 -178.71 63.26 REMARK 500 5 ASN A 12 31.80 86.67 REMARK 500 5 LYS A 43 11.48 -140.25 REMARK 500 5 SER A 51 178.03 58.05 REMARK 500 5 ALA A 56 -169.22 51.56 REMARK 500 5 GLU A 57 94.46 57.59 REMARK 500 5 LEU A 69 54.35 -145.88 REMARK 500 6 ASP A 3 108.76 -59.46 REMARK 500 6 ARG A 4 57.60 -103.11 REMARK 500 6 ASN A 12 31.52 86.71 REMARK 500 6 PRO A 22 91.39 -69.78 REMARK 500 6 SER A 51 -75.46 69.72 REMARK 500 6 ASP A 53 53.47 -176.56 REMARK 500 7 ASP A 3 140.66 -170.85 REMARK 500 7 ASN A 12 30.62 85.83 REMARK 500 7 SER A 51 95.53 65.63 REMARK 500 7 ASP A 53 -63.56 -129.20 REMARK 500 7 ALA A 56 156.31 63.41 REMARK 500 7 GLU A 57 84.86 -178.67 REMARK 500 7 LEU A 69 27.93 -164.39 REMARK 500 8 ARG A 4 61.15 -116.04 REMARK 500 8 ASN A 12 31.68 85.23 REMARK 500 REMARK 500 THIS ENTRY HAS 139 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 36136 RELATED DB: BMRB REMARK 900 DESIGNED PROTEIN DRAFX6 DBREF 5YXI A 1 79 PDB 5YXI 5YXI 1 79 SEQRES 1 A 79 MET ALA ASP ARG THR ILE GLU VAL GLU LEU PRO ASN LYS SEQRES 2 A 79 GLN ARG THR VAL ILE ASN VAL ARG PRO GLY LEU THR LEU SEQRES 3 A 79 LYS GLU ALA LEU LYS LYS ALA LEU LYS VAL ARG GLY ILE SEQRES 4 A 79 ASP PRO ASN LYS VAL GLN VAL TYR LEU LEU LEU SER GLY SEQRES 5 A 79 ASP ASP GLY ALA GLU GLN PRO LEU SER LEU ASN HIS PRO SEQRES 6 A 79 ALA GLU ARG LEU ILE GLY LYS LYS LEU LYS VAL VAL PRO SEQRES 7 A 79 LEU HELIX 1 AA1 THR A 25 GLY A 38 1 14 HELIX 2 AA2 PRO A 65 ILE A 70 5 6 SHEET 1 AA1 5 GLN A 14 ASN A 19 0 SHEET 2 AA1 5 THR A 5 LEU A 10 -1 N ILE A 6 O ILE A 18 SHEET 3 AA1 5 LYS A 73 PRO A 78 1 O LEU A 74 N GLU A 9 SHEET 4 AA1 5 VAL A 44 LEU A 48 -1 N TYR A 47 O LYS A 75 SHEET 5 AA1 5 GLN A 58 PRO A 59 -1 O GLN A 58 N LEU A 48 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1