HEADER IMMUNE SYSTEM 06-DEC-17 5YXN TITLE A T CELL RECEPTOR IN COMPLEX WITH HLA-A0201 RESTRICTED HEPATITIS C TITLE 2 VIRUS NS3 PEPTIDE (KLVALGINAV) COMPND MOL_ID: 1; COMPND 2 MOLECULE: T CELL RECEPTOR ALPHA CHAIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: T CELL RECEPTOR BETA CHAIN; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, A-2 ALPHA CHAIN; COMPND 11 CHAIN: C; COMPND 12 SYNONYM: MHC CLASS I ANTIGEN A*2; COMPND 13 ENGINEERED: YES; COMPND 14 MOL_ID: 4; COMPND 15 MOLECULE: BETA-2-MICROGLOBULIN; COMPND 16 CHAIN: D; COMPND 17 ENGINEERED: YES; COMPND 18 MOL_ID: 5; COMPND 19 MOLECULE: NS3 PEPTIDE; COMPND 20 CHAIN: I; COMPND 21 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 8 ORGANISM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 11 MOL_ID: 3; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 GENE: HLA-A, HLAA; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 18 MOL_ID: 4; SOURCE 19 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 20 ORGANISM_TAXID: 9606; SOURCE 21 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 22 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 23 MOL_ID: 5; SOURCE 24 ORGANISM_SCIENTIFIC: HEPATITIS C VIRUS; SOURCE 25 ORGANISM_TAXID: 11103; SOURCE 26 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 27 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TCR-PEPTIDE-HLA COMPLEX, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR F.HUI REVDAT 1 12-DEC-18 5YXN 0 JRNL AUTH F.HUI JRNL TITL CAPTURING HCV IMMUNE ESCAPE BY TARGETING STRUCTURAL BASED JRNL TITL 2 MECHANISM JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.03 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.03 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 58468 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3060 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.03 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.08 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4273 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.51 REMARK 3 BIN R VALUE (WORKING SET) : 0.2010 REMARK 3 BIN FREE R VALUE SET COUNT : 227 REMARK 3 BIN FREE R VALUE : 0.2630 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6573 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 585 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.05 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.74000 REMARK 3 B22 (A**2) : 0.11000 REMARK 3 B33 (A**2) : -0.83000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.01000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.196 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.161 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.114 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.098 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.940 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.923 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6765 ; 0.010 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 6075 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9188 ; 1.398 ; 1.928 REMARK 3 BOND ANGLES OTHERS (DEGREES): 13985 ; 2.750 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 814 ; 7.541 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 348 ;34.132 ;23.851 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1095 ;15.379 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 47 ;21.116 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 961 ; 0.060 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7764 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1665 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 5YXN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-DEC-17. REMARK 100 THE DEPOSITION ID IS D_1300006101. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-APR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9779 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 61621 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.030 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 4.250 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.03 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.08 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.56 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 21% PEG 3350, 0.18 M AMMONIUM TARTRATE REMARK 280 DIBASIC, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z+1/2 REMARK 290 4555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 29.66284 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 26.82500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 112.01499 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 29.66284 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 26.82500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 112.01499 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: PENTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: PENTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11230 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 35950 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -49.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, I REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU C 178 CB CG CD OE1 OE2 REMARK 470 LYS C 269 CG CD CE NZ REMARK 470 ARG C 274 CG CD NE CZ NH1 NH2 REMARK 470 LYS D 21 CG CD CE NZ REMARK 470 GLU D 46 CB CG CD OE1 OE2 REMARK 470 GLU D 49 CB CG CD OE1 OE2 REMARK 470 GLU D 76 CB CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASN A 188 O HOH A 201 1.18 REMARK 500 O ASP A 154 OG SER A 179 1.56 REMARK 500 CB ASN A 188 ND2 ASN A 192 1.83 REMARK 500 O ASN A 188 N PHE A 190 1.83 REMARK 500 O HOH C 472 O HOH C 496 1.85 REMARK 500 O HOH B 433 O HOH B 470 1.85 REMARK 500 O HOH D 227 O HOH D 267 1.92 REMARK 500 O HOH B 435 O HOH B 451 1.95 REMARK 500 O HOH B 405 O HOH B 461 1.97 REMARK 500 O HOH A 265 O HOH A 280 2.02 REMARK 500 O ASP B 60 O HOH B 301 2.02 REMARK 500 OG SER A 130 O HOH A 202 2.03 REMARK 500 NE2 GLN C 142 O HOH C 301 2.04 REMARK 500 CB CYS A 136 SG CYS A 186 2.06 REMARK 500 N PHE A 190 O HOH A 201 2.08 REMARK 500 CA ASN A 188 ND2 ASN A 192 2.08 REMARK 500 O HOH C 445 O HOH C 486 2.09 REMARK 500 N ALA B 180 O HOH B 302 2.09 REMARK 500 O SER A 153 O HOH A 203 2.10 REMARK 500 NZ LYS A 56 O HOH A 204 2.11 REMARK 500 O HOH C 317 O HOH C 488 2.12 REMARK 500 OG SER A 179 NZ LYS A 181 2.12 REMARK 500 O HOH D 261 O HOH D 284 2.13 REMARK 500 OG1 THR C 179 O HOH C 302 2.13 REMARK 500 O HOH C 402 O HOH C 450 2.13 REMARK 500 O HOH D 264 O HOH D 267 2.13 REMARK 500 O HOH C 369 O HOH C 453 2.15 REMARK 500 O HOH C 491 O HOH C 493 2.15 REMARK 500 SD MET A 165 O HOH B 454 2.16 REMARK 500 NH2 ARG C 83 O HOH C 303 2.17 REMARK 500 OD1 ASP B 219 O HOH B 303 2.18 REMARK 500 O HOH C 378 O HOH C 401 2.18 REMARK 500 NH1 ARG C 22 OD1 ASP C 38 2.18 REMARK 500 NZ LYS A 56 O HOH A 205 2.18 REMARK 500 OD1 ASP C 228 O HOH C 304 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 311 O HOH C 488 3445 1.93 REMARK 500 O HOH A 294 O HOH C 478 3445 2.04 REMARK 500 O HOH A 306 O HOH C 478 3445 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 64 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 LEU A 163 CB - CG - CD1 ANGL. DEV. = -13.7 DEGREES REMARK 500 ARG C 158 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 ARG D 5 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 3 70.04 57.11 REMARK 500 ALA A 17 -4.26 80.98 REMARK 500 ASN A 63 -115.96 56.40 REMARK 500 ASP A 119 61.57 -159.51 REMARK 500 SER A 130 63.54 156.51 REMARK 500 SER A 131 -133.89 -172.56 REMARK 500 ASP A 132 155.30 166.75 REMARK 500 LYS A 133 105.75 39.37 REMARK 500 ASN A 146 90.47 -64.04 REMARK 500 SER A 150 174.50 -37.32 REMARK 500 LYS A 151 -101.38 -142.70 REMARK 500 ASP A 152 47.21 5.10 REMARK 500 SER A 153 -59.48 55.44 REMARK 500 SER A 179 126.92 166.12 REMARK 500 LYS A 181 -73.88 172.92 REMARK 500 SER A 182 -88.25 -81.63 REMARK 500 PHE A 184 131.36 172.69 REMARK 500 ALA A 187 -46.26 -137.33 REMARK 500 ASN A 188 -110.09 -86.35 REMARK 500 ALA A 189 -52.73 37.40 REMARK 500 PHE A 190 -93.90 -97.37 REMARK 500 ASN A 191 67.63 -53.62 REMARK 500 ASN A 192 10.34 169.27 REMARK 500 ALA B 3 116.15 76.74 REMARK 500 ASP B 4 59.43 -91.34 REMARK 500 ASN B 54 -3.76 73.92 REMARK 500 ASP B 60 -154.89 -124.85 REMARK 500 LEU B 61 67.58 -67.82 REMARK 500 SER B 81 83.58 80.82 REMARK 500 ASP B 114 -93.20 -130.61 REMARK 500 LEU B 115 -33.21 155.92 REMARK 500 ASP B 151 49.65 -83.41 REMARK 500 PRO B 179 -5.88 -55.21 REMARK 500 ALA B 226 123.95 88.07 REMARK 500 ASP C 30 -121.11 46.22 REMARK 500 SER C 196 -142.82 160.95 REMARK 500 GLN C 254 -0.79 -156.10 REMARK 500 GLN D 4 107.39 76.61 REMARK 500 LYS D 50 67.71 -109.08 REMARK 500 ARG D 99 -46.53 -28.37 REMARK 500 ASP D 100 28.00 -77.72 REMARK 500 REMARK 500 REMARK: NULL DBREF 5YXN A 2 193 PDB 5YXN 5YXN 2 193 DBREF 5YXN B 2 242 PDB 5YXN 5YXN 2 242 DBREF 5YXN C 2 276 UNP P01892 1A02_HUMAN 25 299 DBREF 5YXN D 2 101 PDB 5YXN 5YXN 2 101 DBREF 5YXN I 1 10 PDB 5YXN 5YXN 1 10 SEQRES 1 A 192 ALA GLN THR VAL THR GLN SER GLN PRO GLU MET SER VAL SEQRES 2 A 192 GLN GLU ALA GLU THR VAL THR LEU SER CYS THR TYR ASP SEQRES 3 A 192 THR SER GLU SER ASP TYR TYR LEU PHE TRP TYR LYS GLN SEQRES 4 A 192 PRO PRO SER ARG GLN MET ILE LEU VAL ILE ARG GLN GLU SEQRES 5 A 192 ALA TYR LYS GLN GLN ASN ALA THR GLU ASN ARG PHE SER SEQRES 6 A 192 VAL ASN PHE GLN LYS ALA ALA LYS SER PHE SER LEU LYS SEQRES 7 A 192 ILE SER ASP SER GLN LEU GLY ASP ALA ALA MET TYR PHE SEQRES 8 A 192 CYS ALA TYR GLY GLU ASP ASP LYS ILE ILE PHE GLY LYS SEQRES 9 A 192 GLY THR ARG LEU HIS ILE LEU PRO ASN ILE GLN ASN PRO SEQRES 10 A 192 ASP PRO ALA VAL TYR GLN LEU ARG ASP SER LYS SER SER SEQRES 11 A 192 ASP LYS SER VAL CYS LEU PHE THR ASP PHE ASP SER GLN SEQRES 12 A 192 THR ASN VAL SER GLN SER LYS ASP SER ASP VAL TYR ILE SEQRES 13 A 192 THR ASP LYS CYS VAL LEU ASP MET ARG SER MET ASP PHE SEQRES 14 A 192 LYS SER ASN SER ALA VAL ALA TRP SER ASN LYS SER ASP SEQRES 15 A 192 PHE ALA CYS ALA ASN ALA PHE ASN ASN SER SEQRES 1 B 241 ALA ALA ASP ILE TYR GLN THR PRO ARG TYR LEU VAL ILE SEQRES 2 B 241 GLY THR GLY LYS LYS ILE THR LEU GLU CYS SER GLN THR SEQRES 3 B 241 MET GLY HIS ASP LYS MET TYR TRP TYR GLN GLN ASP PRO SEQRES 4 B 241 GLY MET GLU LEU HIS LEU ILE HIS TYR SER TYR GLY VAL SEQRES 5 B 241 ASN SER THR GLU LYS GLY ASP LEU SER SER GLU SER THR SEQRES 6 B 241 VAL SER ARG ILE ARG THR GLU HIS PHE PRO LEU THR LEU SEQRES 7 B 241 GLU SER ALA ARG PRO SER HIS THR SER GLN TYR LEU CYS SEQRES 8 B 241 ALA SER ARG ARG GLY PRO TYR GLU GLN TYR PHE GLY PRO SEQRES 9 B 241 GLY THR ARG LEU THR VAL THR GLU ASP LEU LYS ASN VAL SEQRES 10 B 241 PHE PRO PRO GLU VAL ALA VAL PHE GLU PRO SER GLU ALA SEQRES 11 B 241 GLU ILE SER HIS THR GLN LYS ALA THR LEU VAL CYS LEU SEQRES 12 B 241 ALA THR GLY PHE TYR PRO ASP HIS VAL GLU LEU SER TRP SEQRES 13 B 241 TRP VAL ASN GLY LYS GLU VAL HIS SER GLY VAL CYS THR SEQRES 14 B 241 ASP PRO GLN PRO LEU LYS GLU GLN PRO ALA LEU ASN ASP SEQRES 15 B 241 SER ARG TYR ALA LEU SER SER ARG LEU ARG VAL SER ALA SEQRES 16 B 241 THR PHE TRP GLN ASP PRO ARG ASN HIS PHE ARG CYS GLN SEQRES 17 B 241 VAL GLN PHE TYR GLY LEU SER GLU ASN ASP GLU TRP THR SEQRES 18 B 241 GLN ASP ARG ALA LYS PRO VAL THR GLN ILE VAL SER ALA SEQRES 19 B 241 GLU ALA TRP GLY ARG ALA ASP SEQRES 1 C 275 GLY SER HIS SER MET ARG TYR PHE PHE THR SER VAL SER SEQRES 2 C 275 ARG PRO GLY ARG GLY GLU PRO ARG PHE ILE ALA VAL GLY SEQRES 3 C 275 TYR VAL ASP ASP THR GLN PHE VAL ARG PHE ASP SER ASP SEQRES 4 C 275 ALA ALA SER GLN ARG MET GLU PRO ARG ALA PRO TRP ILE SEQRES 5 C 275 GLU GLN GLU GLY PRO GLU TYR TRP ASP GLY GLU THR ARG SEQRES 6 C 275 LYS VAL LYS ALA HIS SER GLN THR HIS ARG VAL ASP LEU SEQRES 7 C 275 GLY THR LEU ARG GLY TYR TYR ASN GLN SER GLU ALA GLY SEQRES 8 C 275 SER HIS THR VAL GLN ARG MET TYR GLY CYS ASP VAL GLY SEQRES 9 C 275 SER ASP TRP ARG PHE LEU ARG GLY TYR HIS GLN TYR ALA SEQRES 10 C 275 TYR ASP GLY LYS ASP TYR ILE ALA LEU LYS GLU ASP LEU SEQRES 11 C 275 ARG SER TRP THR ALA ALA ASP MET ALA ALA GLN THR THR SEQRES 12 C 275 LYS HIS LYS TRP GLU ALA ALA HIS VAL ALA GLU GLN LEU SEQRES 13 C 275 ARG ALA TYR LEU GLU GLY THR CYS VAL GLU TRP LEU ARG SEQRES 14 C 275 ARG TYR LEU GLU ASN GLY LYS GLU THR LEU GLN ARG THR SEQRES 15 C 275 ASP ALA PRO LYS THR HIS MET THR HIS HIS ALA VAL SER SEQRES 16 C 275 ASP HIS GLU ALA THR LEU ARG CYS TRP ALA LEU SER PHE SEQRES 17 C 275 TYR PRO ALA GLU ILE THR LEU THR TRP GLN ARG ASP GLY SEQRES 18 C 275 GLU ASP GLN THR GLN ASP THR GLU LEU VAL GLU THR ARG SEQRES 19 C 275 PRO ALA GLY ASP GLY THR PHE GLN LYS TRP ALA ALA VAL SEQRES 20 C 275 VAL VAL PRO SER GLY GLN GLU GLN ARG TYR THR CYS HIS SEQRES 21 C 275 VAL GLN HIS GLU GLY LEU PRO LYS PRO LEU THR LEU ARG SEQRES 22 C 275 TRP GLU SEQRES 1 D 100 GLY ILE GLN ARG THR PRO LYS ILE GLN VAL TYR SER ARG SEQRES 2 D 100 HIS PRO ALA GLU ASN GLY LYS SER ASN PHE LEU ASN CYS SEQRES 3 D 100 TYR VAL SER GLY PHE HIS PRO SER GLU ILE GLU VAL ASP SEQRES 4 D 100 LEU LEU LYS ASN GLY GLU ARG ILE GLU LYS VAL GLU HIS SEQRES 5 D 100 SER ASP LEU SER PHE SER GLU ASP TRP SER PHE TYR LEU SEQRES 6 D 100 LEU TYR TYR THR GLU PHE THR PRO THR GLU LYS ASP GLU SEQRES 7 D 100 TYR ALA CYS ARG VAL ASN HIS VAL THR LEU SER GLN PRO SEQRES 8 D 100 LYS ILE VAL LYS TRP ASP ARG ASP MET SEQRES 1 I 10 LYS LEU VAL ALA LEU GLY ILE ASN ALA VAL FORMUL 6 HOH *585(H2 O) HELIX 1 AA1 GLN A 84 ALA A 88 5 5 HELIX 2 AA2 ARG A 166 ASP A 169 5 4 HELIX 3 AA3 ARG B 83 THR B 87 5 5 HELIX 4 AA4 SER B 129 GLN B 137 1 9 HELIX 5 AA5 ALA B 196 GLN B 200 1 5 HELIX 6 AA6 PRO C 51 GLU C 56 5 6 HELIX 7 AA7 GLY C 57 TYR C 86 1 30 HELIX 8 AA8 ASP C 138 ALA C 151 1 14 HELIX 9 AA9 HIS C 152 GLY C 163 1 12 HELIX 10 AB1 GLY C 163 GLY C 176 1 14 HELIX 11 AB2 GLY C 176 GLN C 181 1 6 HELIX 12 AB3 GLN C 254 GLN C 256 5 3 SHEET 1 AA1 2 THR A 4 THR A 6 0 SHEET 2 AA1 2 THR A 25 ASP A 27 -1 O THR A 25 N THR A 6 SHEET 1 AA2 5 GLU A 11 GLN A 15 0 SHEET 2 AA2 5 THR A 107 LEU A 112 1 O LEU A 112 N VAL A 14 SHEET 3 AA2 5 ALA A 89 GLY A 96 -1 N ALA A 89 O LEU A 109 SHEET 4 AA2 5 TYR A 34 GLN A 40 -1 N TYR A 34 O GLY A 96 SHEET 5 AA2 5 ILE A 47 GLU A 53 -1 O GLN A 52 N LEU A 35 SHEET 1 AA3 4 GLU A 11 GLN A 15 0 SHEET 2 AA3 4 THR A 107 LEU A 112 1 O LEU A 112 N VAL A 14 SHEET 3 AA3 4 ALA A 89 GLY A 96 -1 N ALA A 89 O LEU A 109 SHEET 4 AA3 4 ILE A 101 PHE A 103 -1 O ILE A 102 N TYR A 95 SHEET 1 AA4 4 VAL A 20 LEU A 22 0 SHEET 2 AA4 4 SER A 75 ILE A 80 -1 O LEU A 78 N LEU A 22 SHEET 3 AA4 4 PHE A 65 GLN A 70 -1 N SER A 66 O LYS A 79 SHEET 4 AA4 4 THR A 61 GLU A 62 -1 N GLU A 62 O PHE A 65 SHEET 1 AA5 8 TYR A 156 ILE A 157 0 SHEET 2 AA5 8 PHE A 170 TRP A 178 -1 O TRP A 178 N TYR A 156 SHEET 3 AA5 8 VAL A 135 THR A 139 -1 N CYS A 136 O ALA A 177 SHEET 4 AA5 8 ALA A 121 ASP A 127 -1 N LEU A 125 O VAL A 135 SHEET 5 AA5 8 GLU B 122 GLU B 127 -1 O GLU B 127 N ARG A 126 SHEET 6 AA5 8 LYS B 138 PHE B 148 -1 O THR B 146 N GLU B 122 SHEET 7 AA5 8 TYR B 186 SER B 195 -1 O VAL B 194 N ALA B 139 SHEET 8 AA5 8 VAL B 168 THR B 170 -1 N CYS B 169 O ARG B 191 SHEET 1 AA6 8 CYS A 161 MET A 165 0 SHEET 2 AA6 8 PHE A 170 TRP A 178 -1 O PHE A 170 N MET A 165 SHEET 3 AA6 8 VAL A 135 THR A 139 -1 N CYS A 136 O ALA A 177 SHEET 4 AA6 8 ALA A 121 ASP A 127 -1 N LEU A 125 O VAL A 135 SHEET 5 AA6 8 GLU B 122 GLU B 127 -1 O GLU B 127 N ARG A 126 SHEET 6 AA6 8 LYS B 138 PHE B 148 -1 O THR B 146 N GLU B 122 SHEET 7 AA6 8 TYR B 186 SER B 195 -1 O VAL B 194 N ALA B 139 SHEET 8 AA6 8 LEU B 175 LYS B 176 -1 N LEU B 175 O ALA B 187 SHEET 1 AA7 4 ILE B 5 THR B 8 0 SHEET 2 AA7 4 ILE B 20 GLN B 26 -1 O SER B 25 N TYR B 6 SHEET 3 AA7 4 LEU B 77 LEU B 79 -1 O LEU B 79 N ILE B 20 SHEET 4 AA7 4 SER B 65 VAL B 67 -1 N THR B 66 O THR B 78 SHEET 1 AA8 6 TYR B 11 GLY B 15 0 SHEET 2 AA8 6 THR B 107 THR B 112 1 O THR B 110 N LEU B 12 SHEET 3 AA8 6 SER B 88 ARG B 95 -1 N TYR B 90 O THR B 107 SHEET 4 AA8 6 LYS B 32 GLN B 38 -1 N GLN B 38 O GLN B 89 SHEET 5 AA8 6 LEU B 44 SER B 50 -1 O ILE B 47 N TRP B 35 SHEET 6 AA8 6 GLU B 57 LYS B 58 -1 O GLU B 57 N TYR B 49 SHEET 1 AA9 4 TYR B 11 GLY B 15 0 SHEET 2 AA9 4 THR B 107 THR B 112 1 O THR B 110 N LEU B 12 SHEET 3 AA9 4 SER B 88 ARG B 95 -1 N TYR B 90 O THR B 107 SHEET 4 AA9 4 GLN B 101 PHE B 103 -1 O TYR B 102 N SER B 94 SHEET 1 AB1 4 LYS B 162 VAL B 164 0 SHEET 2 AB1 4 VAL B 153 VAL B 159 -1 N VAL B 159 O LYS B 162 SHEET 3 AB1 4 HIS B 205 PHE B 212 -1 O GLN B 209 N SER B 156 SHEET 4 AB1 4 GLN B 231 TRP B 238 -1 O GLN B 231 N PHE B 212 SHEET 1 AB2 8 GLU C 47 PRO C 48 0 SHEET 2 AB2 8 THR C 32 ASP C 38 -1 N ARG C 36 O GLU C 47 SHEET 3 AB2 8 ARG C 22 VAL C 29 -1 N GLY C 27 O PHE C 34 SHEET 4 AB2 8 HIS C 4 VAL C 13 -1 N ARG C 7 O TYR C 28 SHEET 5 AB2 8 THR C 95 VAL C 104 -1 O VAL C 104 N HIS C 4 SHEET 6 AB2 8 PHE C 110 TYR C 119 -1 O GLN C 116 N MET C 99 SHEET 7 AB2 8 LYS C 122 LEU C 127 -1 O LEU C 127 N HIS C 115 SHEET 8 AB2 8 TRP C 134 ALA C 136 -1 O THR C 135 N ALA C 126 SHEET 1 AB3 4 LYS C 187 ALA C 194 0 SHEET 2 AB3 4 GLU C 199 PHE C 209 -1 O ARG C 203 N THR C 191 SHEET 3 AB3 4 PHE C 242 PRO C 251 -1 O ALA C 246 N CYS C 204 SHEET 4 AB3 4 THR C 229 LEU C 231 -1 N GLU C 230 O ALA C 247 SHEET 1 AB4 4 LYS C 187 ALA C 194 0 SHEET 2 AB4 4 GLU C 199 PHE C 209 -1 O ARG C 203 N THR C 191 SHEET 3 AB4 4 PHE C 242 PRO C 251 -1 O ALA C 246 N CYS C 204 SHEET 4 AB4 4 ARG C 235 PRO C 236 -1 N ARG C 235 O GLN C 243 SHEET 1 AB5 4 GLU C 223 ASP C 224 0 SHEET 2 AB5 4 THR C 215 ARG C 220 -1 N ARG C 220 O GLU C 223 SHEET 3 AB5 4 TYR C 258 GLN C 263 -1 O HIS C 261 N THR C 217 SHEET 4 AB5 4 LEU C 271 LEU C 273 -1 O LEU C 273 N CYS C 260 SHEET 1 AB6 4 LYS D 8 SER D 13 0 SHEET 2 AB6 4 ASN D 23 PHE D 32 -1 O ASN D 26 N TYR D 12 SHEET 3 AB6 4 PHE D 64 PHE D 72 -1 O THR D 70 N LEU D 25 SHEET 4 AB6 4 GLU D 52 HIS D 53 -1 N GLU D 52 O TYR D 69 SHEET 1 AB7 4 LYS D 8 SER D 13 0 SHEET 2 AB7 4 ASN D 23 PHE D 32 -1 O ASN D 26 N TYR D 12 SHEET 3 AB7 4 PHE D 64 PHE D 72 -1 O THR D 70 N LEU D 25 SHEET 4 AB7 4 SER D 57 PHE D 58 -1 N SER D 57 O TYR D 65 SHEET 1 AB8 4 GLU D 46 ARG D 47 0 SHEET 2 AB8 4 GLU D 38 LYS D 43 -1 N LYS D 43 O GLU D 46 SHEET 3 AB8 4 TYR D 80 ASN D 85 -1 O ARG D 83 N ASP D 40 SHEET 4 AB8 4 LYS D 93 LYS D 96 -1 O LYS D 93 N VAL D 84 SSBOND 1 CYS A 24 CYS A 93 1555 1555 2.04 SSBOND 2 CYS A 136 CYS A 186 1555 1555 2.09 SSBOND 3 CYS A 161 CYS B 169 1555 1555 2.00 SSBOND 4 CYS B 24 CYS B 92 1555 1555 2.01 SSBOND 5 CYS B 143 CYS B 208 1555 1555 2.01 SSBOND 6 CYS C 102 CYS C 165 1555 1555 2.06 SSBOND 7 CYS C 204 CYS C 260 1555 1555 2.05 SSBOND 8 CYS D 27 CYS D 82 1555 1555 2.04 CISPEP 1 THR B 8 PRO B 9 0 -4.54 CISPEP 2 SER B 63 GLU B 64 0 -8.32 CISPEP 3 TYR B 149 PRO B 150 0 1.94 CISPEP 4 TYR C 210 PRO C 211 0 0.77 CISPEP 5 HIS D 33 PRO D 34 0 0.93 CRYST1 79.990 53.650 224.981 90.00 95.27 90.00 I 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012502 0.000000 0.001154 0.00000 SCALE2 0.000000 0.018639 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004464 0.00000