data_5YXW # _entry.id 5YXW # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.356 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5YXW pdb_00005yxw 10.2210/pdb5yxw/pdb WWPDB D_1300006091 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5YXW _pdbx_database_status.recvd_initial_deposition_date 2017-12-07 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Hashiguchi, T.' 1 0000-0001-7578-7571 'Fukuda, Y.' 2 ? 'Matsuoka, R.' 3 ? 'Kuroda, D.' 4 ? 'Kubota, M.' 5 ? 'Shirogane, Y.' 6 ? 'Watanabe, S.' 7 ? 'Tsumoto, K.' 8 ? 'Kohda, D.' 9 ? 'Plemper, R.K.' 10 ? 'Yanagi, Y.' 11 0000-0001-7815-1667 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Proc. Natl. Acad. Sci. U.S.A.' _citation.journal_id_ASTM PNASA6 _citation.journal_id_CSD 0040 _citation.journal_id_ISSN 1091-6490 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 115 _citation.language ? _citation.page_first 2496 _citation.page_last 2501 _citation.title 'Structures of the prefusion form of measles virus fusion protein in complex with inhibitors.' _citation.year 2018 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1073/pnas.1718957115 _citation.pdbx_database_id_PubMed 29463726 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Hashiguchi, T.' 1 ? primary 'Fukuda, Y.' 2 ? primary 'Matsuoka, R.' 3 ? primary 'Kuroda, D.' 4 ? primary 'Kubota, M.' 5 ? primary 'Shirogane, Y.' 6 ? primary 'Watanabe, S.' 7 ? primary 'Tsumoto, K.' 8 ? primary 'Kohda, D.' 9 ? primary 'Plemper, R.K.' 10 ? primary 'Yanagi, Y.' 11 ? # _cell.entry_id 5YXW _cell.length_a 167.389 _cell.length_b 167.389 _cell.length_c 167.389 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5YXW _symmetry.space_group_name_H-M 'I 21 3' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 199 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'glycoprotein F2' 10524.273 1 ? ? ? ? 2 polymer man 'glycoprotein F1,measles virus fusion protein' 44925.941 1 ? ? ? 'The fusion protein of glycoprotein F1,measles virus fusion protein and Tags' 3 branched man '2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose' 424.401 1 ? ? ? ? 4 non-polymer man 2-acetamido-2-deoxy-beta-D-glucopyranose 221.208 1 ? ? ? ? 5 water nat water 18.015 7 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;GTPTGQIHWGNLSKIGVVGIGSASYKVMTRSSHQSLVIKLMPNITLLNNCTRVEIAEYRRLLRTVLEPIRDALNAMTQNI RPVQSVASSRRHKR ; ;GTPTGQIHWGNLSKIGVVGIGSASYKVMTRSSHQSLVIKLMPNITLLNNCTRVEIAEYRRLLRTVLEPIRDALNAMTQNI RPVQSVASSRRHKR ; A ? 2 'polypeptide(L)' no no ;FAGVVLAGAALGVATAAQITAGIALHQSMLNSQAIDNLRASLETTNQAIEAIRQAGQEMILAVQGVQDYINNELIPSMNQ LSCDLIGQKLGLKLLRYYTEILSLFGPSLRDPISAEISIQALSYALGGDINKVLEKLGYSGGDLLGILESRGIKARITHV DTESYFIVLSIAYPTLSEIKGVIVHRLEGVSYNIGSQEWYTTVPKYVATQGYLISNFDESSCTFMPEGTVCSQNALYPMS PLLQECLRGSTKSCARTLVSGSFGNRFILSQGNLIANCASILCKCYTTGTIINQDPDKILTYIAADHCPVVEVNGVTIQV GSRRYPDAVYLHRIDLGPPISLERLDVGTNLGNAIAKLEDAKELLESSDQCCRSMKGCCSTSLEGIEGRAGWSHPQFEKG GGSGGGSGGGSWSHPQFEK ; ;FAGVVLAGAALGVATAAQITAGIALHQSMLNSQAIDNLRASLETTNQAIEAIRQAGQEMILAVQGVQDYINNELIPSMNQ LSCDLIGQKLGLKLLRYYTEILSLFGPSLRDPISAEISIQALSYALGGDINKVLEKLGYSGGDLLGILESRGIKARITHV DTESYFIVLSIAYPTLSEIKGVIVHRLEGVSYNIGSQEWYTTVPKYVATQGYLISNFDESSCTFMPEGTVCSQNALYPMS PLLQECLRGSTKSCARTLVSGSFGNRFILSQGNLIANCASILCKCYTTGTIINQDPDKILTYIAADHCPVVEVNGVTIQV GSRRYPDAVYLHRIDLGPPISLERLDVGTNLGNAIAKLEDAKELLESSDQCCRSMKGCCSTSLEGIEGRAGWSHPQFEKG GGSGGGSGGGSWSHPQFEK ; B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 THR n 1 3 PRO n 1 4 THR n 1 5 GLY n 1 6 GLN n 1 7 ILE n 1 8 HIS n 1 9 TRP n 1 10 GLY n 1 11 ASN n 1 12 LEU n 1 13 SER n 1 14 LYS n 1 15 ILE n 1 16 GLY n 1 17 VAL n 1 18 VAL n 1 19 GLY n 1 20 ILE n 1 21 GLY n 1 22 SER n 1 23 ALA n 1 24 SER n 1 25 TYR n 1 26 LYS n 1 27 VAL n 1 28 MET n 1 29 THR n 1 30 ARG n 1 31 SER n 1 32 SER n 1 33 HIS n 1 34 GLN n 1 35 SER n 1 36 LEU n 1 37 VAL n 1 38 ILE n 1 39 LYS n 1 40 LEU n 1 41 MET n 1 42 PRO n 1 43 ASN n 1 44 ILE n 1 45 THR n 1 46 LEU n 1 47 LEU n 1 48 ASN n 1 49 ASN n 1 50 CYS n 1 51 THR n 1 52 ARG n 1 53 VAL n 1 54 GLU n 1 55 ILE n 1 56 ALA n 1 57 GLU n 1 58 TYR n 1 59 ARG n 1 60 ARG n 1 61 LEU n 1 62 LEU n 1 63 ARG n 1 64 THR n 1 65 VAL n 1 66 LEU n 1 67 GLU n 1 68 PRO n 1 69 ILE n 1 70 ARG n 1 71 ASP n 1 72 ALA n 1 73 LEU n 1 74 ASN n 1 75 ALA n 1 76 MET n 1 77 THR n 1 78 GLN n 1 79 ASN n 1 80 ILE n 1 81 ARG n 1 82 PRO n 1 83 VAL n 1 84 GLN n 1 85 SER n 1 86 VAL n 1 87 ALA n 1 88 SER n 1 89 SER n 1 90 ARG n 1 91 ARG n 1 92 HIS n 1 93 LYS n 1 94 ARG n 2 1 PHE n 2 2 ALA n 2 3 GLY n 2 4 VAL n 2 5 VAL n 2 6 LEU n 2 7 ALA n 2 8 GLY n 2 9 ALA n 2 10 ALA n 2 11 LEU n 2 12 GLY n 2 13 VAL n 2 14 ALA n 2 15 THR n 2 16 ALA n 2 17 ALA n 2 18 GLN n 2 19 ILE n 2 20 THR n 2 21 ALA n 2 22 GLY n 2 23 ILE n 2 24 ALA n 2 25 LEU n 2 26 HIS n 2 27 GLN n 2 28 SER n 2 29 MET n 2 30 LEU n 2 31 ASN n 2 32 SER n 2 33 GLN n 2 34 ALA n 2 35 ILE n 2 36 ASP n 2 37 ASN n 2 38 LEU n 2 39 ARG n 2 40 ALA n 2 41 SER n 2 42 LEU n 2 43 GLU n 2 44 THR n 2 45 THR n 2 46 ASN n 2 47 GLN n 2 48 ALA n 2 49 ILE n 2 50 GLU n 2 51 ALA n 2 52 ILE n 2 53 ARG n 2 54 GLN n 2 55 ALA n 2 56 GLY n 2 57 GLN n 2 58 GLU n 2 59 MET n 2 60 ILE n 2 61 LEU n 2 62 ALA n 2 63 VAL n 2 64 GLN n 2 65 GLY n 2 66 VAL n 2 67 GLN n 2 68 ASP n 2 69 TYR n 2 70 ILE n 2 71 ASN n 2 72 ASN n 2 73 GLU n 2 74 LEU n 2 75 ILE n 2 76 PRO n 2 77 SER n 2 78 MET n 2 79 ASN n 2 80 GLN n 2 81 LEU n 2 82 SER n 2 83 CYS n 2 84 ASP n 2 85 LEU n 2 86 ILE n 2 87 GLY n 2 88 GLN n 2 89 LYS n 2 90 LEU n 2 91 GLY n 2 92 LEU n 2 93 LYS n 2 94 LEU n 2 95 LEU n 2 96 ARG n 2 97 TYR n 2 98 TYR n 2 99 THR n 2 100 GLU n 2 101 ILE n 2 102 LEU n 2 103 SER n 2 104 LEU n 2 105 PHE n 2 106 GLY n 2 107 PRO n 2 108 SER n 2 109 LEU n 2 110 ARG n 2 111 ASP n 2 112 PRO n 2 113 ILE n 2 114 SER n 2 115 ALA n 2 116 GLU n 2 117 ILE n 2 118 SER n 2 119 ILE n 2 120 GLN n 2 121 ALA n 2 122 LEU n 2 123 SER n 2 124 TYR n 2 125 ALA n 2 126 LEU n 2 127 GLY n 2 128 GLY n 2 129 ASP n 2 130 ILE n 2 131 ASN n 2 132 LYS n 2 133 VAL n 2 134 LEU n 2 135 GLU n 2 136 LYS n 2 137 LEU n 2 138 GLY n 2 139 TYR n 2 140 SER n 2 141 GLY n 2 142 GLY n 2 143 ASP n 2 144 LEU n 2 145 LEU n 2 146 GLY n 2 147 ILE n 2 148 LEU n 2 149 GLU n 2 150 SER n 2 151 ARG n 2 152 GLY n 2 153 ILE n 2 154 LYS n 2 155 ALA n 2 156 ARG n 2 157 ILE n 2 158 THR n 2 159 HIS n 2 160 VAL n 2 161 ASP n 2 162 THR n 2 163 GLU n 2 164 SER n 2 165 TYR n 2 166 PHE n 2 167 ILE n 2 168 VAL n 2 169 LEU n 2 170 SER n 2 171 ILE n 2 172 ALA n 2 173 TYR n 2 174 PRO n 2 175 THR n 2 176 LEU n 2 177 SER n 2 178 GLU n 2 179 ILE n 2 180 LYS n 2 181 GLY n 2 182 VAL n 2 183 ILE n 2 184 VAL n 2 185 HIS n 2 186 ARG n 2 187 LEU n 2 188 GLU n 2 189 GLY n 2 190 VAL n 2 191 SER n 2 192 TYR n 2 193 ASN n 2 194 ILE n 2 195 GLY n 2 196 SER n 2 197 GLN n 2 198 GLU n 2 199 TRP n 2 200 TYR n 2 201 THR n 2 202 THR n 2 203 VAL n 2 204 PRO n 2 205 LYS n 2 206 TYR n 2 207 VAL n 2 208 ALA n 2 209 THR n 2 210 GLN n 2 211 GLY n 2 212 TYR n 2 213 LEU n 2 214 ILE n 2 215 SER n 2 216 ASN n 2 217 PHE n 2 218 ASP n 2 219 GLU n 2 220 SER n 2 221 SER n 2 222 CYS n 2 223 THR n 2 224 PHE n 2 225 MET n 2 226 PRO n 2 227 GLU n 2 228 GLY n 2 229 THR n 2 230 VAL n 2 231 CYS n 2 232 SER n 2 233 GLN n 2 234 ASN n 2 235 ALA n 2 236 LEU n 2 237 TYR n 2 238 PRO n 2 239 MET n 2 240 SER n 2 241 PRO n 2 242 LEU n 2 243 LEU n 2 244 GLN n 2 245 GLU n 2 246 CYS n 2 247 LEU n 2 248 ARG n 2 249 GLY n 2 250 SER n 2 251 THR n 2 252 LYS n 2 253 SER n 2 254 CYS n 2 255 ALA n 2 256 ARG n 2 257 THR n 2 258 LEU n 2 259 VAL n 2 260 SER n 2 261 GLY n 2 262 SER n 2 263 PHE n 2 264 GLY n 2 265 ASN n 2 266 ARG n 2 267 PHE n 2 268 ILE n 2 269 LEU n 2 270 SER n 2 271 GLN n 2 272 GLY n 2 273 ASN n 2 274 LEU n 2 275 ILE n 2 276 ALA n 2 277 ASN n 2 278 CYS n 2 279 ALA n 2 280 SER n 2 281 ILE n 2 282 LEU n 2 283 CYS n 2 284 LYS n 2 285 CYS n 2 286 TYR n 2 287 THR n 2 288 THR n 2 289 GLY n 2 290 THR n 2 291 ILE n 2 292 ILE n 2 293 ASN n 2 294 GLN n 2 295 ASP n 2 296 PRO n 2 297 ASP n 2 298 LYS n 2 299 ILE n 2 300 LEU n 2 301 THR n 2 302 TYR n 2 303 ILE n 2 304 ALA n 2 305 ALA n 2 306 ASP n 2 307 HIS n 2 308 CYS n 2 309 PRO n 2 310 VAL n 2 311 VAL n 2 312 GLU n 2 313 VAL n 2 314 ASN n 2 315 GLY n 2 316 VAL n 2 317 THR n 2 318 ILE n 2 319 GLN n 2 320 VAL n 2 321 GLY n 2 322 SER n 2 323 ARG n 2 324 ARG n 2 325 TYR n 2 326 PRO n 2 327 ASP n 2 328 ALA n 2 329 VAL n 2 330 TYR n 2 331 LEU n 2 332 HIS n 2 333 ARG n 2 334 ILE n 2 335 ASP n 2 336 LEU n 2 337 GLY n 2 338 PRO n 2 339 PRO n 2 340 ILE n 2 341 SER n 2 342 LEU n 2 343 GLU n 2 344 ARG n 2 345 LEU n 2 346 ASP n 2 347 VAL n 2 348 GLY n 2 349 THR n 2 350 ASN n 2 351 LEU n 2 352 GLY n 2 353 ASN n 2 354 ALA n 2 355 ILE n 2 356 ALA n 2 357 LYS n 2 358 LEU n 2 359 GLU n 2 360 ASP n 2 361 ALA n 2 362 LYS n 2 363 GLU n 2 364 LEU n 2 365 LEU n 2 366 GLU n 2 367 SER n 2 368 SER n 2 369 ASP n 2 370 GLN n 2 371 CYS n 2 372 CYS n 2 373 ARG n 2 374 SER n 2 375 MET n 2 376 LYS n 2 377 GLY n 2 378 CYS n 2 379 CYS n 2 380 SER n 2 381 THR n 2 382 SER n 2 383 LEU n 2 384 GLU n 2 385 GLY n 2 386 ILE n 2 387 GLU n 2 388 GLY n 2 389 ARG n 2 390 ALA n 2 391 GLY n 2 392 TRP n 2 393 SER n 2 394 HIS n 2 395 PRO n 2 396 GLN n 2 397 PHE n 2 398 GLU n 2 399 LYS n 2 400 GLY n 2 401 GLY n 2 402 GLY n 2 403 SER n 2 404 GLY n 2 405 GLY n 2 406 GLY n 2 407 SER n 2 408 GLY n 2 409 GLY n 2 410 GLY n 2 411 SER n 2 412 TRP n 2 413 SER n 2 414 HIS n 2 415 PRO n 2 416 GLN n 2 417 PHE n 2 418 GLU n 2 419 LYS n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample 'Biological sequence' 1 94 MeV ? ? ? Ichinose-B95a ? ? ? ? 'Measles virus (strain Ichinose-B95a)' 645098 ? ? ? ? ? ? ? ? 'Drosophila melanogaster' 7227 ? ? ? ? ? ? ? ? ? ? ? S2 ? ? ? ? ? ? ? ? ? 2 1 sample 'Biological sequence' 1 370 MeV ? ? ? Ichinose-B95a ? ? ? ? 'Measles virus (strain Ichinose-B95a)' 645098 ? ? ? ? ? ? ? ? 'Drosophila melanogaster' 7227 ? ? ? ? ? ? ? ? ? ? ? S2 ? ? ? ? ? ? ? ? ? 2 2 sample 'Biological sequence' 371 419 ? ? ? ? IC-B ? ? ? ? 'Measles virus' 11234 ? ? ? ? ? ? ? ? 'Drosophila melanogaster' 7227 ? ? ? ? ? ? ? ? ? ? ? S2 ? ? ? ? ? ? ? ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP FUS_MEASC Q786F3 ? 1 ;TPTGQIHWGNLSKIGVVGIGSASYKVMTRSSHQSLVIKLMPNITLLNNCTRVEIAEYRRLLRTVLEPIRDALNAMTQNIR PVQSVASSRRHKR ; 20 2 UNP FUS_MEASC Q786F3 ? 2 ;FAGVVLAGAALGVATAAQITAGIALHQSMLNSQAIDNLRASLETTNQAIEAIRQAGQEMILAVQGVQDYINNELIPSMNQ LSCDLIGQKLGLKLLRYYTEILSLFGPSLRDPISAEISIQALSYALGGDINKVLEKLGYSGGDLLGILESRGIKARITHV DTESYFIVLSIAYPTLSEIKGVIVHRLEGVSYNIGSQEWYTTVPKYVATQGYLISNFDESSCTFMPEGTVCSQNALYPMS PLLQECLRGSTKSCARTLVSGSFGNRFILSQGNLIANCASILCKCYTTGTIINQDPDKILTYIAADHCPVVEVNGVTIQV GSRRYPDAVYLHRIDLGPPISLERLDVGTNLGNAIAKLEDAKELLESSDQ ; 113 3 PDB 5YXW 5YXW ? 2 ? 371 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 5YXW A 2 ? 94 ? Q786F3 20 ? 112 ? 20 112 2 2 5YXW B 1 ? 370 ? Q786F3 113 ? 482 ? 113 482 3 3 5YXW B 371 ? 419 ? 5YXW 483 ? 531 ? 483 531 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 5YXW _struct_ref_seq_dif.mon_id GLY _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code Q786F3 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'expression tag' _struct_ref_seq_dif.pdbx_auth_seq_num 19 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ;N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE ; 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5YXW _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 3.52 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 68.74 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details 'sodium formate, glycerol, sodium acetate' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS EIGER X 4M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2016-12-17 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.1 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'PHOTON FACTORY BEAMLINE BL-1A' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL-1A _diffrn_source.pdbx_synchrotron_site 'Photon Factory' # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 5YXW _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.776 _reflns.d_resolution_low 68.336 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 19874 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 100.0 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 20.8 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 28.5 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 2.776 _reflns_shell.d_res_low 2.785 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.percent_possible_all ? _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_R_split ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 5YXW _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 19869 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.36 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 68.336 _refine.ls_d_res_high 2.776 _refine.ls_percent_reflns_obs 99.97 _refine.ls_R_factor_obs 0.2064 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2016 _refine.ls_R_factor_R_free 0.2488 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10.11 _refine.ls_number_reflns_R_free 2008 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.43 _refine.pdbx_overall_phase_error 27.14 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 3433 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 42 _refine_hist.number_atoms_solvent 7 _refine_hist.number_atoms_total 3482 _refine_hist.d_res_high 2.776 _refine_hist.d_res_low 68.336 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.011 ? ? 3533 'X-RAY DIFFRACTION' ? f_angle_d 1.371 ? ? 4806 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 17.069 ? ? 1668 'X-RAY DIFFRACTION' ? f_chiral_restr 0.086 ? ? 585 'X-RAY DIFFRACTION' ? f_plane_restr 0.010 ? ? 610 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.number_reflns_obs 'X-RAY DIFFRACTION' . 2.7760 2.8454 1285 0.3298 100.00 0.3863 . . 139 . . . . 'X-RAY DIFFRACTION' . 2.8454 2.9223 1259 0.2944 100.00 0.3344 . . 143 . . . . 'X-RAY DIFFRACTION' . 2.9223 3.0083 1237 0.2843 100.00 0.3447 . . 140 . . . . 'X-RAY DIFFRACTION' . 3.0083 3.1054 1275 0.2759 100.00 0.3439 . . 147 . . . . 'X-RAY DIFFRACTION' . 3.1054 3.2164 1262 0.2528 100.00 0.3253 . . 138 . . . . 'X-RAY DIFFRACTION' . 3.2164 3.3452 1276 0.2578 100.00 0.3178 . . 146 . . . . 'X-RAY DIFFRACTION' . 3.3452 3.4974 1251 0.2441 100.00 0.2921 . . 146 . . . . 'X-RAY DIFFRACTION' . 3.4974 3.6818 1261 0.2037 100.00 0.2541 . . 139 . . . . 'X-RAY DIFFRACTION' . 3.6818 3.9125 1280 0.1951 100.00 0.2286 . . 144 . . . . 'X-RAY DIFFRACTION' . 3.9125 4.2145 1268 0.1801 100.00 0.2203 . . 144 . . . . 'X-RAY DIFFRACTION' . 4.2145 4.6385 1283 0.1593 100.00 0.2191 . . 140 . . . . 'X-RAY DIFFRACTION' . 4.6385 5.3095 1286 0.1588 100.00 0.2147 . . 144 . . . . 'X-RAY DIFFRACTION' . 5.3095 6.6885 1290 0.2076 100.00 0.2312 . . 145 . . . . 'X-RAY DIFFRACTION' . 6.6885 68.3570 1348 0.1872 100.00 0.2293 . . 153 . . . . # _struct.entry_id 5YXW _struct.title 'Crystal structure of the prefusion form of measles virus fusion protein' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5YXW _struct_keywords.text 'glycoprotein, viral protein, fusion protein, paramyxovirus, inhibitor, chemical compound' _struct_keywords.pdbx_keywords 'VIRAL PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 5 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 HIS A 8 ? LYS A 14 ? HIS A 26 LYS A 32 1 ? 7 HELX_P HELX_P2 AA2 ILE A 44 ? ASN A 48 ? ILE A 62 ASN A 66 5 ? 5 HELX_P HELX_P3 AA3 THR A 51 ? GLN A 78 ? THR A 69 GLN A 96 1 ? 28 HELX_P HELX_P4 AA4 GLN A 84 ? VAL A 86 ? GLN A 102 VAL A 104 5 ? 3 HELX_P HELX_P5 AA5 ALA B 7 ? GLY B 12 ? ALA B 119 GLY B 124 1 ? 6 HELX_P HELX_P6 AA6 THR B 15 ? MET B 29 ? THR B 127 MET B 141 1 ? 15 HELX_P HELX_P7 AA7 ASN B 31 ? THR B 44 ? ASN B 143 THR B 156 1 ? 14 HELX_P HELX_P8 AA8 VAL B 66 ? LEU B 74 ? VAL B 178 LEU B 186 1 ? 9 HELX_P HELX_P9 AA9 ILE B 75 ? MET B 78 ? ILE B 187 MET B 190 5 ? 4 HELX_P HELX_P10 AB1 SER B 82 ? GLY B 106 ? SER B 194 GLY B 218 1 ? 25 HELX_P HELX_P11 AB2 GLN B 120 ? SER B 123 ? GLN B 232 SER B 235 5 ? 4 HELX_P HELX_P12 AB3 ILE B 130 ? LEU B 137 ? ILE B 242 LEU B 249 1 ? 8 HELX_P HELX_P13 AB4 ASP B 143 ? ARG B 151 ? ASP B 255 ARG B 263 1 ? 9 HELX_P HELX_P14 AB5 SER B 240 ? ARG B 248 ? SER B 352 ARG B 360 1 ? 9 HELX_P HELX_P15 AB6 GLY B 249 ? CYS B 254 ? GLY B 361 CYS B 366 5 ? 6 HELX_P HELX_P16 AB7 TYR B 330 ? ILE B 334 ? TYR B 442 ILE B 446 5 ? 5 HELX_P HELX_P17 AB8 GLU B 343 ? SER B 368 ? GLU B 455 SER B 480 1 ? 26 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 50 SG ? ? ? 1_555 B CYS 83 SG ? ? A CYS 68 B CYS 195 1_555 ? ? ? ? ? ? ? 2.075 ? ? disulf2 disulf ? ? B CYS 222 SG ? ? ? 1_555 B CYS 231 SG ? ? B CYS 334 B CYS 343 1_555 ? ? ? ? ? ? ? 2.067 ? ? disulf3 disulf ? ? B CYS 246 SG ? ? ? 1_555 B CYS 254 SG ? ? B CYS 358 B CYS 366 1_555 ? ? ? ? ? ? ? 2.021 ? ? disulf4 disulf ? ? B CYS 278 SG ? ? ? 1_555 B CYS 283 SG ? ? B CYS 390 B CYS 395 1_555 ? ? ? ? ? ? ? 2.054 ? ? disulf5 disulf ? ? B CYS 285 SG ? ? ? 1_555 B CYS 308 SG ? ? B CYS 397 B CYS 420 1_555 ? ? ? ? ? ? ? 2.091 ? ? covale1 covale one ? A ASN 11 ND2 ? ? ? 1_555 C NAG . C1 ? ? A ASN 29 C NAG 1 1_555 ? ? ? ? ? ? ? 1.450 ? N-Glycosylation covale2 covale one ? A ASN 43 ND2 ? ? ? 1_555 D NAG . C1 ? ? A ASN 61 A NAG 203 1_555 ? ? ? ? ? ? ? 1.439 ? N-Glycosylation covale3 covale both ? C NAG . O4 ? ? ? 1_555 C NAG . C1 ? ? C NAG 1 C NAG 2 1_555 ? ? ? ? ? ? ? 1.471 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 6 ? AA2 ? 7 ? AA3 ? 2 ? AA4 ? 3 ? AA5 ? 3 ? AA6 ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? parallel AA1 3 4 ? anti-parallel AA1 5 6 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA2 3 4 ? anti-parallel AA2 5 6 ? anti-parallel AA2 6 7 ? anti-parallel AA3 1 2 ? anti-parallel AA4 1 2 ? anti-parallel AA4 2 3 ? anti-parallel AA5 1 2 ? anti-parallel AA5 2 3 ? anti-parallel AA6 1 2 ? anti-parallel AA6 2 3 ? anti-parallel AA6 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 ILE B 49 ? ILE B 52 ? ILE B 161 ILE B 164 AA1 2 ILE B 60 ? GLN B 64 ? ILE B 172 GLN B 176 AA1 3 VAL A 17 ? LYS A 39 ? VAL A 35 LYS A 57 AA1 4 PHE B 166 ? GLY B 189 ? PHE B 278 GLY B 301 AA1 5 GLY B 228 ? CYS B 231 ? GLY B 340 CYS B 343 AA1 6 CYS B 222 ? MET B 225 ? CYS B 334 MET B 337 AA2 1 ILE B 117 ? SER B 118 ? ILE B 229 SER B 230 AA2 2 LYS B 154 ? ASP B 161 ? LYS B 266 ASP B 273 AA2 3 PHE B 166 ? GLY B 189 ? PHE B 278 GLY B 301 AA2 4 VAL A 17 ? LYS A 39 ? VAL A 35 LYS A 57 AA2 5 TYR B 206 ? GLN B 210 ? TYR B 318 GLN B 322 AA2 6 LEU B 213 ? PHE B 217 ? LEU B 325 PHE B 329 AA2 7 LEU B 236 ? TYR B 237 ? LEU B 348 TYR B 349 AA3 1 ILE A 80 ? PRO A 82 ? ILE A 98 PRO A 100 AA3 2 VAL B 4 ? LEU B 6 ? VAL B 116 LEU B 118 AA4 1 TYR B 192 ? ILE B 194 ? TYR B 304 ILE B 306 AA4 2 GLN B 197 ? THR B 201 ? GLN B 309 THR B 313 AA4 3 ARG B 256 ? LEU B 258 ? ARG B 368 LEU B 370 AA5 1 PHE B 267 ? SER B 270 ? PHE B 379 SER B 382 AA5 2 ASN B 273 ? ALA B 276 ? ASN B 385 ALA B 388 AA5 3 THR B 301 ? ILE B 303 ? THR B 413 ILE B 415 AA6 1 ILE B 291 ? ILE B 292 ? ILE B 403 ILE B 404 AA6 2 CYS B 283 ? CYS B 285 ? CYS B 395 CYS B 397 AA6 3 VAL B 310 ? VAL B 313 ? VAL B 422 VAL B 425 AA6 4 VAL B 316 ? GLN B 319 ? VAL B 428 GLN B 431 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N ILE B 52 ? N ILE B 164 O ILE B 60 ? O ILE B 172 AA1 2 3 O VAL B 63 ? O VAL B 175 N LYS A 39 ? N LYS A 57 AA1 3 4 N LEU A 36 ? N LEU A 54 O LEU B 169 ? O LEU B 281 AA1 5 6 O VAL B 230 ? O VAL B 342 N THR B 223 ? N THR B 335 AA2 1 2 N ILE B 117 ? N ILE B 229 O ALA B 155 ? O ALA B 267 AA2 2 3 N HIS B 159 ? N HIS B 271 O VAL B 168 ? O VAL B 280 AA2 3 4 O LEU B 169 ? O LEU B 281 N LEU A 36 ? N LEU A 54 AA2 5 6 N ALA B 208 ? N ALA B 320 O SER B 215 ? O SER B 327 AA2 6 7 N ASN B 216 ? N ASN B 328 O TYR B 237 ? O TYR B 349 AA3 1 2 N ARG A 81 ? N ARG A 99 O VAL B 5 ? O VAL B 117 AA4 1 2 N TYR B 192 ? N TYR B 304 O TRP B 199 ? O TRP B 311 AA4 2 3 N TYR B 200 ? N TYR B 312 O THR B 257 ? O THR B 369 AA5 1 2 N SER B 270 ? N SER B 382 O ASN B 273 ? O ASN B 385 AA5 2 3 N LEU B 274 ? N LEU B 386 O ILE B 303 ? O ILE B 415 AA6 1 2 O ILE B 292 ? O ILE B 404 N CYS B 283 ? N CYS B 395 AA6 2 3 N LYS B 284 ? N LYS B 396 O GLU B 312 ? O GLU B 424 AA6 3 4 N VAL B 313 ? N VAL B 425 O VAL B 316 ? O VAL B 428 # _atom_sites.entry_id 5YXW _atom_sites.fract_transf_matrix[1][1] 0.005974 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.005974 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.005974 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 19 ? ? ? A . n A 1 2 THR 2 20 20 THR THR A . n A 1 3 PRO 3 21 21 PRO PRO A . n A 1 4 THR 4 22 22 THR THR A . n A 1 5 GLY 5 23 23 GLY GLY A . n A 1 6 GLN 6 24 24 GLN GLN A . n A 1 7 ILE 7 25 25 ILE ILE A . n A 1 8 HIS 8 26 26 HIS HIS A . n A 1 9 TRP 9 27 27 TRP TRP A . n A 1 10 GLY 10 28 28 GLY GLY A . n A 1 11 ASN 11 29 29 ASN ASN A . n A 1 12 LEU 12 30 30 LEU LEU A . n A 1 13 SER 13 31 31 SER SER A . n A 1 14 LYS 14 32 32 LYS LYS A . n A 1 15 ILE 15 33 33 ILE ILE A . n A 1 16 GLY 16 34 34 GLY GLY A . n A 1 17 VAL 17 35 35 VAL VAL A . n A 1 18 VAL 18 36 36 VAL VAL A . n A 1 19 GLY 19 37 37 GLY GLY A . n A 1 20 ILE 20 38 38 ILE ILE A . n A 1 21 GLY 21 39 39 GLY GLY A . n A 1 22 SER 22 40 40 SER SER A . n A 1 23 ALA 23 41 41 ALA ALA A . n A 1 24 SER 24 42 42 SER SER A . n A 1 25 TYR 25 43 43 TYR TYR A . n A 1 26 LYS 26 44 44 LYS LYS A . n A 1 27 VAL 27 45 45 VAL VAL A . n A 1 28 MET 28 46 46 MET MET A . n A 1 29 THR 29 47 47 THR THR A . n A 1 30 ARG 30 48 48 ARG ARG A . n A 1 31 SER 31 49 49 SER SER A . n A 1 32 SER 32 50 50 SER SER A . n A 1 33 HIS 33 51 51 HIS HIS A . n A 1 34 GLN 34 52 52 GLN GLN A . n A 1 35 SER 35 53 53 SER SER A . n A 1 36 LEU 36 54 54 LEU LEU A . n A 1 37 VAL 37 55 55 VAL VAL A . n A 1 38 ILE 38 56 56 ILE ILE A . n A 1 39 LYS 39 57 57 LYS LYS A . n A 1 40 LEU 40 58 58 LEU LEU A . n A 1 41 MET 41 59 59 MET MET A . n A 1 42 PRO 42 60 60 PRO PRO A . n A 1 43 ASN 43 61 61 ASN ASN A . n A 1 44 ILE 44 62 62 ILE ILE A . n A 1 45 THR 45 63 63 THR THR A . n A 1 46 LEU 46 64 64 LEU LEU A . n A 1 47 LEU 47 65 65 LEU LEU A . n A 1 48 ASN 48 66 66 ASN ASN A . n A 1 49 ASN 49 67 67 ASN ASN A . n A 1 50 CYS 50 68 68 CYS CYS A . n A 1 51 THR 51 69 69 THR THR A . n A 1 52 ARG 52 70 70 ARG ARG A . n A 1 53 VAL 53 71 71 VAL VAL A . n A 1 54 GLU 54 72 72 GLU GLU A . n A 1 55 ILE 55 73 73 ILE ILE A . n A 1 56 ALA 56 74 74 ALA ALA A . n A 1 57 GLU 57 75 75 GLU GLU A . n A 1 58 TYR 58 76 76 TYR TYR A . n A 1 59 ARG 59 77 77 ARG ARG A . n A 1 60 ARG 60 78 78 ARG ARG A . n A 1 61 LEU 61 79 79 LEU LEU A . n A 1 62 LEU 62 80 80 LEU LEU A . n A 1 63 ARG 63 81 81 ARG ARG A . n A 1 64 THR 64 82 82 THR THR A . n A 1 65 VAL 65 83 83 VAL VAL A . n A 1 66 LEU 66 84 84 LEU LEU A . n A 1 67 GLU 67 85 85 GLU GLU A . n A 1 68 PRO 68 86 86 PRO PRO A . n A 1 69 ILE 69 87 87 ILE ILE A . n A 1 70 ARG 70 88 88 ARG ARG A . n A 1 71 ASP 71 89 89 ASP ASP A . n A 1 72 ALA 72 90 90 ALA ALA A . n A 1 73 LEU 73 91 91 LEU LEU A . n A 1 74 ASN 74 92 92 ASN ASN A . n A 1 75 ALA 75 93 93 ALA ALA A . n A 1 76 MET 76 94 94 MET MET A . n A 1 77 THR 77 95 95 THR THR A . n A 1 78 GLN 78 96 96 GLN GLN A . n A 1 79 ASN 79 97 97 ASN ASN A . n A 1 80 ILE 80 98 98 ILE ILE A . n A 1 81 ARG 81 99 99 ARG ARG A . n A 1 82 PRO 82 100 100 PRO PRO A . n A 1 83 VAL 83 101 101 VAL VAL A . n A 1 84 GLN 84 102 102 GLN GLN A . n A 1 85 SER 85 103 103 SER SER A . n A 1 86 VAL 86 104 104 VAL VAL A . n A 1 87 ALA 87 105 ? ? ? A . n A 1 88 SER 88 106 ? ? ? A . n A 1 89 SER 89 107 ? ? ? A . n A 1 90 ARG 90 108 ? ? ? A . n A 1 91 ARG 91 109 ? ? ? A . n A 1 92 HIS 92 110 ? ? ? A . n A 1 93 LYS 93 111 ? ? ? A . n A 1 94 ARG 94 112 ? ? ? A . n B 2 1 PHE 1 113 ? ? ? B . n B 2 2 ALA 2 114 ? ? ? B . n B 2 3 GLY 3 115 115 GLY GLY B . n B 2 4 VAL 4 116 116 VAL VAL B . n B 2 5 VAL 5 117 117 VAL VAL B . n B 2 6 LEU 6 118 118 LEU LEU B . n B 2 7 ALA 7 119 119 ALA ALA B . n B 2 8 GLY 8 120 120 GLY GLY B . n B 2 9 ALA 9 121 121 ALA ALA B . n B 2 10 ALA 10 122 122 ALA ALA B . n B 2 11 LEU 11 123 123 LEU LEU B . n B 2 12 GLY 12 124 124 GLY GLY B . n B 2 13 VAL 13 125 125 VAL VAL B . n B 2 14 ALA 14 126 126 ALA ALA B . n B 2 15 THR 15 127 127 THR THR B . n B 2 16 ALA 16 128 128 ALA ALA B . n B 2 17 ALA 17 129 129 ALA ALA B . n B 2 18 GLN 18 130 130 GLN GLN B . n B 2 19 ILE 19 131 131 ILE ILE B . n B 2 20 THR 20 132 132 THR THR B . n B 2 21 ALA 21 133 133 ALA ALA B . n B 2 22 GLY 22 134 134 GLY GLY B . n B 2 23 ILE 23 135 135 ILE ILE B . n B 2 24 ALA 24 136 136 ALA ALA B . n B 2 25 LEU 25 137 137 LEU LEU B . n B 2 26 HIS 26 138 138 HIS HIS B . n B 2 27 GLN 27 139 139 GLN GLN B . n B 2 28 SER 28 140 140 SER SER B . n B 2 29 MET 29 141 141 MET MET B . n B 2 30 LEU 30 142 142 LEU LEU B . n B 2 31 ASN 31 143 143 ASN ASN B . n B 2 32 SER 32 144 144 SER SER B . n B 2 33 GLN 33 145 145 GLN GLN B . n B 2 34 ALA 34 146 146 ALA ALA B . n B 2 35 ILE 35 147 147 ILE ILE B . n B 2 36 ASP 36 148 148 ASP ASP B . n B 2 37 ASN 37 149 149 ASN ASN B . n B 2 38 LEU 38 150 150 LEU LEU B . n B 2 39 ARG 39 151 151 ARG ARG B . n B 2 40 ALA 40 152 152 ALA ALA B . n B 2 41 SER 41 153 153 SER SER B . n B 2 42 LEU 42 154 154 LEU LEU B . n B 2 43 GLU 43 155 155 GLU GLU B . n B 2 44 THR 44 156 156 THR THR B . n B 2 45 THR 45 157 157 THR THR B . n B 2 46 ASN 46 158 158 ASN ASN B . n B 2 47 GLN 47 159 159 GLN GLN B . n B 2 48 ALA 48 160 160 ALA ALA B . n B 2 49 ILE 49 161 161 ILE ILE B . n B 2 50 GLU 50 162 162 GLU GLU B . n B 2 51 ALA 51 163 163 ALA ALA B . n B 2 52 ILE 52 164 164 ILE ILE B . n B 2 53 ARG 53 165 165 ARG ARG B . n B 2 54 GLN 54 166 166 GLN GLN B . n B 2 55 ALA 55 167 167 ALA ALA B . n B 2 56 GLY 56 168 168 GLY GLY B . n B 2 57 GLN 57 169 169 GLN GLN B . n B 2 58 GLU 58 170 170 GLU GLU B . n B 2 59 MET 59 171 171 MET MET B . n B 2 60 ILE 60 172 172 ILE ILE B . n B 2 61 LEU 61 173 173 LEU LEU B . n B 2 62 ALA 62 174 174 ALA ALA B . n B 2 63 VAL 63 175 175 VAL VAL B . n B 2 64 GLN 64 176 176 GLN GLN B . n B 2 65 GLY 65 177 177 GLY GLY B . n B 2 66 VAL 66 178 178 VAL VAL B . n B 2 67 GLN 67 179 179 GLN GLN B . n B 2 68 ASP 68 180 180 ASP ASP B . n B 2 69 TYR 69 181 181 TYR TYR B . n B 2 70 ILE 70 182 182 ILE ILE B . n B 2 71 ASN 71 183 183 ASN ASN B . n B 2 72 ASN 72 184 184 ASN ASN B . n B 2 73 GLU 73 185 185 GLU GLU B . n B 2 74 LEU 74 186 186 LEU LEU B . n B 2 75 ILE 75 187 187 ILE ILE B . n B 2 76 PRO 76 188 188 PRO PRO B . n B 2 77 SER 77 189 189 SER SER B . n B 2 78 MET 78 190 190 MET MET B . n B 2 79 ASN 79 191 191 ASN ASN B . n B 2 80 GLN 80 192 192 GLN GLN B . n B 2 81 LEU 81 193 193 LEU LEU B . n B 2 82 SER 82 194 194 SER SER B . n B 2 83 CYS 83 195 195 CYS CYS B . n B 2 84 ASP 84 196 196 ASP ASP B . n B 2 85 LEU 85 197 197 LEU LEU B . n B 2 86 ILE 86 198 198 ILE ILE B . n B 2 87 GLY 87 199 199 GLY GLY B . n B 2 88 GLN 88 200 200 GLN GLN B . n B 2 89 LYS 89 201 201 LYS LYS B . n B 2 90 LEU 90 202 202 LEU LEU B . n B 2 91 GLY 91 203 203 GLY GLY B . n B 2 92 LEU 92 204 204 LEU LEU B . n B 2 93 LYS 93 205 205 LYS LYS B . n B 2 94 LEU 94 206 206 LEU LEU B . n B 2 95 LEU 95 207 207 LEU LEU B . n B 2 96 ARG 96 208 208 ARG ARG B . n B 2 97 TYR 97 209 209 TYR TYR B . n B 2 98 TYR 98 210 210 TYR TYR B . n B 2 99 THR 99 211 211 THR THR B . n B 2 100 GLU 100 212 212 GLU GLU B . n B 2 101 ILE 101 213 213 ILE ILE B . n B 2 102 LEU 102 214 214 LEU LEU B . n B 2 103 SER 103 215 215 SER SER B . n B 2 104 LEU 104 216 216 LEU LEU B . n B 2 105 PHE 105 217 217 PHE PHE B . n B 2 106 GLY 106 218 218 GLY GLY B . n B 2 107 PRO 107 219 219 PRO PRO B . n B 2 108 SER 108 220 220 SER SER B . n B 2 109 LEU 109 221 221 LEU LEU B . n B 2 110 ARG 110 222 222 ARG ARG B . n B 2 111 ASP 111 223 223 ASP ASP B . n B 2 112 PRO 112 224 224 PRO PRO B . n B 2 113 ILE 113 225 225 ILE ILE B . n B 2 114 SER 114 226 226 SER SER B . n B 2 115 ALA 115 227 227 ALA ALA B . n B 2 116 GLU 116 228 228 GLU GLU B . n B 2 117 ILE 117 229 229 ILE ILE B . n B 2 118 SER 118 230 230 SER SER B . n B 2 119 ILE 119 231 231 ILE ILE B . n B 2 120 GLN 120 232 232 GLN GLN B . n B 2 121 ALA 121 233 233 ALA ALA B . n B 2 122 LEU 122 234 234 LEU LEU B . n B 2 123 SER 123 235 235 SER SER B . n B 2 124 TYR 124 236 236 TYR TYR B . n B 2 125 ALA 125 237 237 ALA ALA B . n B 2 126 LEU 126 238 238 LEU LEU B . n B 2 127 GLY 127 239 239 GLY GLY B . n B 2 128 GLY 128 240 240 GLY GLY B . n B 2 129 ASP 129 241 241 ASP ASP B . n B 2 130 ILE 130 242 242 ILE ILE B . n B 2 131 ASN 131 243 243 ASN ASN B . n B 2 132 LYS 132 244 244 LYS LYS B . n B 2 133 VAL 133 245 245 VAL VAL B . n B 2 134 LEU 134 246 246 LEU LEU B . n B 2 135 GLU 135 247 247 GLU GLU B . n B 2 136 LYS 136 248 248 LYS LYS B . n B 2 137 LEU 137 249 249 LEU LEU B . n B 2 138 GLY 138 250 250 GLY GLY B . n B 2 139 TYR 139 251 251 TYR TYR B . n B 2 140 SER 140 252 252 SER SER B . n B 2 141 GLY 141 253 253 GLY GLY B . n B 2 142 GLY 142 254 254 GLY GLY B . n B 2 143 ASP 143 255 255 ASP ASP B . n B 2 144 LEU 144 256 256 LEU LEU B . n B 2 145 LEU 145 257 257 LEU LEU B . n B 2 146 GLY 146 258 258 GLY GLY B . n B 2 147 ILE 147 259 259 ILE ILE B . n B 2 148 LEU 148 260 260 LEU LEU B . n B 2 149 GLU 149 261 261 GLU GLU B . n B 2 150 SER 150 262 262 SER SER B . n B 2 151 ARG 151 263 263 ARG ARG B . n B 2 152 GLY 152 264 264 GLY GLY B . n B 2 153 ILE 153 265 265 ILE ILE B . n B 2 154 LYS 154 266 266 LYS LYS B . n B 2 155 ALA 155 267 267 ALA ALA B . n B 2 156 ARG 156 268 268 ARG ARG B . n B 2 157 ILE 157 269 269 ILE ILE B . n B 2 158 THR 158 270 270 THR THR B . n B 2 159 HIS 159 271 271 HIS HIS B . n B 2 160 VAL 160 272 272 VAL VAL B . n B 2 161 ASP 161 273 273 ASP ASP B . n B 2 162 THR 162 274 274 THR THR B . n B 2 163 GLU 163 275 275 GLU GLU B . n B 2 164 SER 164 276 276 SER SER B . n B 2 165 TYR 165 277 277 TYR TYR B . n B 2 166 PHE 166 278 278 PHE PHE B . n B 2 167 ILE 167 279 279 ILE ILE B . n B 2 168 VAL 168 280 280 VAL VAL B . n B 2 169 LEU 169 281 281 LEU LEU B . n B 2 170 SER 170 282 282 SER SER B . n B 2 171 ILE 171 283 283 ILE ILE B . n B 2 172 ALA 172 284 284 ALA ALA B . n B 2 173 TYR 173 285 285 TYR TYR B . n B 2 174 PRO 174 286 286 PRO PRO B . n B 2 175 THR 175 287 287 THR THR B . n B 2 176 LEU 176 288 288 LEU LEU B . n B 2 177 SER 177 289 289 SER SER B . n B 2 178 GLU 178 290 290 GLU GLU B . n B 2 179 ILE 179 291 291 ILE ILE B . n B 2 180 LYS 180 292 292 LYS LYS B . n B 2 181 GLY 181 293 293 GLY GLY B . n B 2 182 VAL 182 294 294 VAL VAL B . n B 2 183 ILE 183 295 295 ILE ILE B . n B 2 184 VAL 184 296 296 VAL VAL B . n B 2 185 HIS 185 297 297 HIS HIS B . n B 2 186 ARG 186 298 298 ARG ARG B . n B 2 187 LEU 187 299 299 LEU LEU B . n B 2 188 GLU 188 300 300 GLU GLU B . n B 2 189 GLY 189 301 301 GLY GLY B . n B 2 190 VAL 190 302 302 VAL VAL B . n B 2 191 SER 191 303 303 SER SER B . n B 2 192 TYR 192 304 304 TYR TYR B . n B 2 193 ASN 193 305 305 ASN ASN B . n B 2 194 ILE 194 306 306 ILE ILE B . n B 2 195 GLY 195 307 307 GLY GLY B . n B 2 196 SER 196 308 308 SER SER B . n B 2 197 GLN 197 309 309 GLN GLN B . n B 2 198 GLU 198 310 310 GLU GLU B . n B 2 199 TRP 199 311 311 TRP TRP B . n B 2 200 TYR 200 312 312 TYR TYR B . n B 2 201 THR 201 313 313 THR THR B . n B 2 202 THR 202 314 314 THR THR B . n B 2 203 VAL 203 315 315 VAL VAL B . n B 2 204 PRO 204 316 316 PRO PRO B . n B 2 205 LYS 205 317 317 LYS LYS B . n B 2 206 TYR 206 318 318 TYR TYR B . n B 2 207 VAL 207 319 319 VAL VAL B . n B 2 208 ALA 208 320 320 ALA ALA B . n B 2 209 THR 209 321 321 THR THR B . n B 2 210 GLN 210 322 322 GLN GLN B . n B 2 211 GLY 211 323 323 GLY GLY B . n B 2 212 TYR 212 324 324 TYR TYR B . n B 2 213 LEU 213 325 325 LEU LEU B . n B 2 214 ILE 214 326 326 ILE ILE B . n B 2 215 SER 215 327 327 SER SER B . n B 2 216 ASN 216 328 328 ASN ASN B . n B 2 217 PHE 217 329 329 PHE PHE B . n B 2 218 ASP 218 330 330 ASP ASP B . n B 2 219 GLU 219 331 331 GLU GLU B . n B 2 220 SER 220 332 332 SER SER B . n B 2 221 SER 221 333 333 SER SER B . n B 2 222 CYS 222 334 334 CYS CYS B . n B 2 223 THR 223 335 335 THR THR B . n B 2 224 PHE 224 336 336 PHE PHE B . n B 2 225 MET 225 337 337 MET MET B . n B 2 226 PRO 226 338 338 PRO PRO B . n B 2 227 GLU 227 339 339 GLU GLU B . n B 2 228 GLY 228 340 340 GLY GLY B . n B 2 229 THR 229 341 341 THR THR B . n B 2 230 VAL 230 342 342 VAL VAL B . n B 2 231 CYS 231 343 343 CYS CYS B . n B 2 232 SER 232 344 344 SER SER B . n B 2 233 GLN 233 345 345 GLN GLN B . n B 2 234 ASN 234 346 346 ASN ASN B . n B 2 235 ALA 235 347 347 ALA ALA B . n B 2 236 LEU 236 348 348 LEU LEU B . n B 2 237 TYR 237 349 349 TYR TYR B . n B 2 238 PRO 238 350 350 PRO PRO B . n B 2 239 MET 239 351 351 MET MET B . n B 2 240 SER 240 352 352 SER SER B . n B 2 241 PRO 241 353 353 PRO PRO B . n B 2 242 LEU 242 354 354 LEU LEU B . n B 2 243 LEU 243 355 355 LEU LEU B . n B 2 244 GLN 244 356 356 GLN GLN B . n B 2 245 GLU 245 357 357 GLU GLU B . n B 2 246 CYS 246 358 358 CYS CYS B . n B 2 247 LEU 247 359 359 LEU LEU B . n B 2 248 ARG 248 360 360 ARG ARG B . n B 2 249 GLY 249 361 361 GLY GLY B . n B 2 250 SER 250 362 362 SER SER B . n B 2 251 THR 251 363 363 THR THR B . n B 2 252 LYS 252 364 364 LYS LYS B . n B 2 253 SER 253 365 365 SER SER B . n B 2 254 CYS 254 366 366 CYS CYS B . n B 2 255 ALA 255 367 367 ALA ALA B . n B 2 256 ARG 256 368 368 ARG ARG B . n B 2 257 THR 257 369 369 THR THR B . n B 2 258 LEU 258 370 370 LEU LEU B . n B 2 259 VAL 259 371 371 VAL VAL B . n B 2 260 SER 260 372 372 SER SER B . n B 2 261 GLY 261 373 373 GLY GLY B . n B 2 262 SER 262 374 374 SER SER B . n B 2 263 PHE 263 375 375 PHE PHE B . n B 2 264 GLY 264 376 376 GLY GLY B . n B 2 265 ASN 265 377 377 ASN ASN B . n B 2 266 ARG 266 378 378 ARG ARG B . n B 2 267 PHE 267 379 379 PHE PHE B . n B 2 268 ILE 268 380 380 ILE ILE B . n B 2 269 LEU 269 381 381 LEU LEU B . n B 2 270 SER 270 382 382 SER SER B . n B 2 271 GLN 271 383 383 GLN GLN B . n B 2 272 GLY 272 384 384 GLY GLY B . n B 2 273 ASN 273 385 385 ASN ASN B . n B 2 274 LEU 274 386 386 LEU LEU B . n B 2 275 ILE 275 387 387 ILE ILE B . n B 2 276 ALA 276 388 388 ALA ALA B . n B 2 277 ASN 277 389 389 ASN ASN B . n B 2 278 CYS 278 390 390 CYS CYS B . n B 2 279 ALA 279 391 391 ALA ALA B . n B 2 280 SER 280 392 392 SER SER B . n B 2 281 ILE 281 393 393 ILE ILE B . n B 2 282 LEU 282 394 394 LEU LEU B . n B 2 283 CYS 283 395 395 CYS CYS B . n B 2 284 LYS 284 396 396 LYS LYS B . n B 2 285 CYS 285 397 397 CYS CYS B . n B 2 286 TYR 286 398 398 TYR TYR B . n B 2 287 THR 287 399 399 THR THR B . n B 2 288 THR 288 400 400 THR THR B . n B 2 289 GLY 289 401 401 GLY GLY B . n B 2 290 THR 290 402 402 THR THR B . n B 2 291 ILE 291 403 403 ILE ILE B . n B 2 292 ILE 292 404 404 ILE ILE B . n B 2 293 ASN 293 405 405 ASN ASN B . n B 2 294 GLN 294 406 406 GLN GLN B . n B 2 295 ASP 295 407 407 ASP ASP B . n B 2 296 PRO 296 408 408 PRO PRO B . n B 2 297 ASP 297 409 409 ASP ASP B . n B 2 298 LYS 298 410 410 LYS LYS B . n B 2 299 ILE 299 411 411 ILE ILE B . n B 2 300 LEU 300 412 412 LEU LEU B . n B 2 301 THR 301 413 413 THR THR B . n B 2 302 TYR 302 414 414 TYR TYR B . n B 2 303 ILE 303 415 415 ILE ILE B . n B 2 304 ALA 304 416 416 ALA ALA B . n B 2 305 ALA 305 417 417 ALA ALA B . n B 2 306 ASP 306 418 418 ASP ASP B . n B 2 307 HIS 307 419 419 HIS HIS B . n B 2 308 CYS 308 420 420 CYS CYS B . n B 2 309 PRO 309 421 421 PRO PRO B . n B 2 310 VAL 310 422 422 VAL VAL B . n B 2 311 VAL 311 423 423 VAL VAL B . n B 2 312 GLU 312 424 424 GLU GLU B . n B 2 313 VAL 313 425 425 VAL VAL B . n B 2 314 ASN 314 426 426 ASN ASN B . n B 2 315 GLY 315 427 427 GLY GLY B . n B 2 316 VAL 316 428 428 VAL VAL B . n B 2 317 THR 317 429 429 THR THR B . n B 2 318 ILE 318 430 430 ILE ILE B . n B 2 319 GLN 319 431 431 GLN GLN B . n B 2 320 VAL 320 432 432 VAL VAL B . n B 2 321 GLY 321 433 433 GLY GLY B . n B 2 322 SER 322 434 434 SER SER B . n B 2 323 ARG 323 435 435 ARG ARG B . n B 2 324 ARG 324 436 436 ARG ARG B . n B 2 325 TYR 325 437 437 TYR TYR B . n B 2 326 PRO 326 438 438 PRO PRO B . n B 2 327 ASP 327 439 439 ASP ASP B . n B 2 328 ALA 328 440 440 ALA ALA B . n B 2 329 VAL 329 441 441 VAL VAL B . n B 2 330 TYR 330 442 442 TYR TYR B . n B 2 331 LEU 331 443 443 LEU LEU B . n B 2 332 HIS 332 444 444 HIS HIS B . n B 2 333 ARG 333 445 445 ARG ARG B . n B 2 334 ILE 334 446 446 ILE ILE B . n B 2 335 ASP 335 447 447 ASP ASP B . n B 2 336 LEU 336 448 448 LEU LEU B . n B 2 337 GLY 337 449 449 GLY GLY B . n B 2 338 PRO 338 450 450 PRO PRO B . n B 2 339 PRO 339 451 451 PRO PRO B . n B 2 340 ILE 340 452 452 ILE ILE B . n B 2 341 SER 341 453 453 SER SER B . n B 2 342 LEU 342 454 454 LEU LEU B . n B 2 343 GLU 343 455 455 GLU GLU B . n B 2 344 ARG 344 456 456 ARG ARG B . n B 2 345 LEU 345 457 457 LEU LEU B . n B 2 346 ASP 346 458 458 ASP ASP B . n B 2 347 VAL 347 459 459 VAL VAL B . n B 2 348 GLY 348 460 460 GLY GLY B . n B 2 349 THR 349 461 461 THR THR B . n B 2 350 ASN 350 462 462 ASN ASN B . n B 2 351 LEU 351 463 463 LEU LEU B . n B 2 352 GLY 352 464 464 GLY GLY B . n B 2 353 ASN 353 465 465 ASN ASN B . n B 2 354 ALA 354 466 466 ALA ALA B . n B 2 355 ILE 355 467 467 ILE ILE B . n B 2 356 ALA 356 468 468 ALA ALA B . n B 2 357 LYS 357 469 469 LYS LYS B . n B 2 358 LEU 358 470 470 LEU LEU B . n B 2 359 GLU 359 471 471 GLU GLU B . n B 2 360 ASP 360 472 472 ASP ASP B . n B 2 361 ALA 361 473 473 ALA ALA B . n B 2 362 LYS 362 474 474 LYS LYS B . n B 2 363 GLU 363 475 475 GLU GLU B . n B 2 364 LEU 364 476 476 LEU LEU B . n B 2 365 LEU 365 477 477 LEU LEU B . n B 2 366 GLU 366 478 478 GLU GLU B . n B 2 367 SER 367 479 479 SER SER B . n B 2 368 SER 368 480 480 SER SER B . n B 2 369 ASP 369 481 481 ASP ASP B . n B 2 370 GLN 370 482 ? ? ? B . n B 2 371 CYS 371 483 ? ? ? B . n B 2 372 CYS 372 484 ? ? ? B . n B 2 373 ARG 373 485 ? ? ? B . n B 2 374 SER 374 486 ? ? ? B . n B 2 375 MET 375 487 ? ? ? B . n B 2 376 LYS 376 488 ? ? ? B . n B 2 377 GLY 377 489 ? ? ? B . n B 2 378 CYS 378 490 ? ? ? B . n B 2 379 CYS 379 491 ? ? ? B . n B 2 380 SER 380 492 ? ? ? B . n B 2 381 THR 381 493 ? ? ? B . n B 2 382 SER 382 494 ? ? ? B . n B 2 383 LEU 383 495 ? ? ? B . n B 2 384 GLU 384 496 ? ? ? B . n B 2 385 GLY 385 497 ? ? ? B . n B 2 386 ILE 386 498 ? ? ? B . n B 2 387 GLU 387 499 ? ? ? B . n B 2 388 GLY 388 500 ? ? ? B . n B 2 389 ARG 389 501 ? ? ? B . n B 2 390 ALA 390 502 ? ? ? B . n B 2 391 GLY 391 503 ? ? ? B . n B 2 392 TRP 392 504 ? ? ? B . n B 2 393 SER 393 505 ? ? ? B . n B 2 394 HIS 394 506 ? ? ? B . n B 2 395 PRO 395 507 ? ? ? B . n B 2 396 GLN 396 508 ? ? ? B . n B 2 397 PHE 397 509 ? ? ? B . n B 2 398 GLU 398 510 ? ? ? B . n B 2 399 LYS 399 511 ? ? ? B . n B 2 400 GLY 400 512 ? ? ? B . n B 2 401 GLY 401 513 ? ? ? B . n B 2 402 GLY 402 514 ? ? ? B . n B 2 403 SER 403 515 ? ? ? B . n B 2 404 GLY 404 516 ? ? ? B . n B 2 405 GLY 405 517 ? ? ? B . n B 2 406 GLY 406 518 ? ? ? B . n B 2 407 SER 407 519 ? ? ? B . n B 2 408 GLY 408 520 ? ? ? B . n B 2 409 GLY 409 521 ? ? ? B . n B 2 410 GLY 410 522 ? ? ? B . n B 2 411 SER 411 523 ? ? ? B . n B 2 412 TRP 412 524 ? ? ? B . n B 2 413 SER 413 525 ? ? ? B . n B 2 414 HIS 414 526 ? ? ? B . n B 2 415 PRO 415 527 ? ? ? B . n B 2 416 GLN 416 528 ? ? ? B . n B 2 417 PHE 417 529 ? ? ? B . n B 2 418 GLU 418 530 ? ? ? B . n B 2 419 LYS 419 531 ? ? ? B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 NAG 1 203 700 NAG NAG A . E 5 HOH 1 301 6 HOH HOH A . E 5 HOH 2 302 2 HOH HOH A . F 5 HOH 1 601 7 HOH HOH B . F 5 HOH 2 602 1 HOH HOH B . F 5 HOH 3 603 3 HOH HOH B . F 5 HOH 4 604 5 HOH HOH B . F 5 HOH 5 605 4 HOH HOH B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 46440 ? 1 MORE -295 ? 1 'SSA (A^2)' 56780 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 5_555 z,x,y 0.0000000000 0.0000000000 1.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 3 'crystal symmetry operation' 9_555 y,z,x 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2018-02-21 2 'Structure model' 1 1 2018-03-07 3 'Structure model' 1 2 2018-03-21 4 'Structure model' 2 0 2020-07-29 5 'Structure model' 2 1 2022-03-23 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 4 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Atomic model' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Structure summary' 7 5 'Structure model' 'Author supporting evidence' 8 5 'Structure model' 'Database references' 9 5 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 3 'Structure model' citation 3 4 'Structure model' atom_site 4 4 'Structure model' chem_comp 5 4 'Structure model' entity 6 4 'Structure model' pdbx_branch_scheme 7 4 'Structure model' pdbx_chem_comp_identifier 8 4 'Structure model' pdbx_entity_branch 9 4 'Structure model' pdbx_entity_branch_descriptor 10 4 'Structure model' pdbx_entity_branch_link 11 4 'Structure model' pdbx_entity_branch_list 12 4 'Structure model' pdbx_entity_nonpoly 13 4 'Structure model' pdbx_nonpoly_scheme 14 4 'Structure model' pdbx_struct_assembly_gen 15 4 'Structure model' struct_asym 16 4 'Structure model' struct_conn 17 4 'Structure model' struct_site 18 4 'Structure model' struct_site_gen 19 5 'Structure model' chem_comp 20 5 'Structure model' database_2 21 5 'Structure model' pdbx_audit_support # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_ASTM' 4 2 'Structure model' '_citation.journal_id_CSD' 5 2 'Structure model' '_citation.journal_id_ISSN' 6 2 'Structure model' '_citation.pdbx_database_id_DOI' 7 2 'Structure model' '_citation.pdbx_database_id_PubMed' 8 2 'Structure model' '_citation.title' 9 2 'Structure model' '_citation.year' 10 3 'Structure model' '_citation.journal_volume' 11 3 'Structure model' '_citation.page_first' 12 3 'Structure model' '_citation.page_last' 13 4 'Structure model' '_atom_site.auth_asym_id' 14 4 'Structure model' '_atom_site.auth_seq_id' 15 4 'Structure model' '_atom_site.label_asym_id' 16 4 'Structure model' '_atom_site.label_entity_id' 17 4 'Structure model' '_chem_comp.name' 18 4 'Structure model' '_chem_comp.type' 19 4 'Structure model' '_pdbx_entity_nonpoly.entity_id' 20 4 'Structure model' '_pdbx_entity_nonpoly.name' 21 4 'Structure model' '_pdbx_struct_assembly_gen.asym_id_list' 22 4 'Structure model' '_struct_conn.pdbx_role' 23 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 24 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 25 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 26 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 27 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 28 5 'Structure model' '_chem_comp.pdbx_synonyms' 29 5 'Structure model' '_database_2.pdbx_DOI' 30 5 'Structure model' '_database_2.pdbx_database_accession' 31 5 'Structure model' '_pdbx_audit_support.funding_organization' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? '(1.11_2567)' 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? Aimless ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? . 4 ? 'model building' ? ? ? ? ? ? ? ? ? ? ? Coot ? ? ? . 5 # _pdbx_entry_details.compound_details ? _pdbx_entry_details.entry_id 5YXW _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details 'The chain B includes four mutations I483C, L484C, L490C, S491C and tag sequence (residues 495-531).' _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 NH1 A ARG 48 ? ? O B GLY 264 ? ? 2.15 2 1 O B TYR 324 ? ? NH2 B ARG 360 ? ? 2.19 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 NE _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 ARG _pdbx_validate_rmsd_angle.auth_seq_id_1 48 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CZ _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 ARG _pdbx_validate_rmsd_angle.auth_seq_id_2 48 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 NH2 _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 ARG _pdbx_validate_rmsd_angle.auth_seq_id_3 48 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 116.74 _pdbx_validate_rmsd_angle.angle_target_value 120.30 _pdbx_validate_rmsd_angle.angle_deviation -3.56 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.50 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 50 ? ? 64.78 -161.53 2 1 SER A 103 ? ? -61.80 2.14 3 1 ASN B 158 ? ? -143.98 19.35 4 1 ASP B 241 ? ? -170.96 148.15 5 1 TYR B 277 ? ? 61.94 70.58 6 1 VAL B 371 ? ? -65.19 86.52 # loop_ _pdbx_validate_peptide_omega.id _pdbx_validate_peptide_omega.PDB_model_num _pdbx_validate_peptide_omega.auth_comp_id_1 _pdbx_validate_peptide_omega.auth_asym_id_1 _pdbx_validate_peptide_omega.auth_seq_id_1 _pdbx_validate_peptide_omega.PDB_ins_code_1 _pdbx_validate_peptide_omega.label_alt_id_1 _pdbx_validate_peptide_omega.auth_comp_id_2 _pdbx_validate_peptide_omega.auth_asym_id_2 _pdbx_validate_peptide_omega.auth_seq_id_2 _pdbx_validate_peptide_omega.PDB_ins_code_2 _pdbx_validate_peptide_omega.label_alt_id_2 _pdbx_validate_peptide_omega.omega 1 1 ILE B 291 ? ? LYS B 292 ? ? -135.97 2 1 LEU B 370 ? ? VAL B 371 ? ? 142.42 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 B ASP 481 ? CG ? B ASP 369 CG 2 1 Y 1 B ASP 481 ? OD1 ? B ASP 369 OD1 3 1 Y 1 B ASP 481 ? OD2 ? B ASP 369 OD2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 19 ? A GLY 1 2 1 Y 1 A ALA 105 ? A ALA 87 3 1 Y 1 A SER 106 ? A SER 88 4 1 Y 1 A SER 107 ? A SER 89 5 1 Y 1 A ARG 108 ? A ARG 90 6 1 Y 1 A ARG 109 ? A ARG 91 7 1 Y 1 A HIS 110 ? A HIS 92 8 1 Y 1 A LYS 111 ? A LYS 93 9 1 Y 1 A ARG 112 ? A ARG 94 10 1 Y 1 B PHE 113 ? B PHE 1 11 1 Y 1 B ALA 114 ? B ALA 2 12 1 Y 1 B GLN 482 ? B GLN 370 13 1 Y 1 B CYS 483 ? B CYS 371 14 1 Y 1 B CYS 484 ? B CYS 372 15 1 Y 1 B ARG 485 ? B ARG 373 16 1 Y 1 B SER 486 ? B SER 374 17 1 Y 1 B MET 487 ? B MET 375 18 1 Y 1 B LYS 488 ? B LYS 376 19 1 Y 1 B GLY 489 ? B GLY 377 20 1 Y 1 B CYS 490 ? B CYS 378 21 1 Y 1 B CYS 491 ? B CYS 379 22 1 Y 1 B SER 492 ? B SER 380 23 1 Y 1 B THR 493 ? B THR 381 24 1 Y 1 B SER 494 ? B SER 382 25 1 Y 1 B LEU 495 ? B LEU 383 26 1 Y 1 B GLU 496 ? B GLU 384 27 1 Y 1 B GLY 497 ? B GLY 385 28 1 Y 1 B ILE 498 ? B ILE 386 29 1 Y 1 B GLU 499 ? B GLU 387 30 1 Y 1 B GLY 500 ? B GLY 388 31 1 Y 1 B ARG 501 ? B ARG 389 32 1 Y 1 B ALA 502 ? B ALA 390 33 1 Y 1 B GLY 503 ? B GLY 391 34 1 Y 1 B TRP 504 ? B TRP 392 35 1 Y 1 B SER 505 ? B SER 393 36 1 Y 1 B HIS 506 ? B HIS 394 37 1 Y 1 B PRO 507 ? B PRO 395 38 1 Y 1 B GLN 508 ? B GLN 396 39 1 Y 1 B PHE 509 ? B PHE 397 40 1 Y 1 B GLU 510 ? B GLU 398 41 1 Y 1 B LYS 511 ? B LYS 399 42 1 Y 1 B GLY 512 ? B GLY 400 43 1 Y 1 B GLY 513 ? B GLY 401 44 1 Y 1 B GLY 514 ? B GLY 402 45 1 Y 1 B SER 515 ? B SER 403 46 1 Y 1 B GLY 516 ? B GLY 404 47 1 Y 1 B GLY 517 ? B GLY 405 48 1 Y 1 B GLY 518 ? B GLY 406 49 1 Y 1 B SER 519 ? B SER 407 50 1 Y 1 B GLY 520 ? B GLY 408 51 1 Y 1 B GLY 521 ? B GLY 409 52 1 Y 1 B GLY 522 ? B GLY 410 53 1 Y 1 B SER 523 ? B SER 411 54 1 Y 1 B TRP 524 ? B TRP 412 55 1 Y 1 B SER 525 ? B SER 413 56 1 Y 1 B HIS 526 ? B HIS 414 57 1 Y 1 B PRO 527 ? B PRO 415 58 1 Y 1 B GLN 528 ? B GLN 416 59 1 Y 1 B PHE 529 ? B PHE 417 60 1 Y 1 B GLU 530 ? B GLU 418 61 1 Y 1 B LYS 531 ? B LYS 419 # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal MEXT Japan 17K19562 1 MEXT Japan 24115005 2 AMED Japan 17fm0208022h0001 3 'National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)' 'United States' AI071002 4 'National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)' 'United States' HD079327 5 # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero C 3 NAG 1 C NAG 1 A NAG 600 n C 3 NAG 2 C NAG 2 A NAG 601 n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 3 DGlcpNAcb1-4DGlcpNAcb1- 'Glycam Condensed Sequence' GMML 1.0 2 3 'WURCS=2.0/1,2,1/[a2122h-1b_1-5_2*NCC/3=O]/1-1/a4-b1' WURCS PDB2Glycan 1.1.0 3 3 '[]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{}}}' LINUCS PDB-CARE ? # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.entity_id 3 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.value_order sing _pdbx_entity_branch_link.details ? # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 3 NAG 1 n 3 NAG 2 n # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 2-acetamido-2-deoxy-beta-D-glucopyranose NAG 5 water HOH # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support homology _pdbx_struct_assembly_auth_evidence.details ? #