HEADER VIRAL PROTEIN 07-DEC-17 5YXW TITLE CRYSTAL STRUCTURE OF THE PREFUSION FORM OF MEASLES VIRUS FUSION TITLE 2 PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCOPROTEIN F2; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: GLYCOPROTEIN F1,MEASLES VIRUS FUSION PROTEIN; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES; COMPND 9 OTHER_DETAILS: THE FUSION PROTEIN OF GLYCOPROTEIN F1,MEASLES VIRUS COMPND 10 FUSION PROTEIN AND TAGS SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MEASLES VIRUS (STRAIN ICHINOSE-B95A); SOURCE 3 ORGANISM_COMMON: MEV; SOURCE 4 ORGANISM_TAXID: 645098; SOURCE 5 STRAIN: ICHINOSE-B95A; SOURCE 6 EXPRESSION_SYSTEM: DROSOPHILA MELANOGASTER; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7227; SOURCE 8 EXPRESSION_SYSTEM_CELL: S2; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: MEASLES VIRUS (STRAIN ICHINOSE-B95A), MEASLES SOURCE 11 VIRUS; SOURCE 12 ORGANISM_COMMON: MEV; SOURCE 13 ORGANISM_TAXID: 645098, 11234; SOURCE 14 STRAIN: ICHINOSE-B95A, IC-B; SOURCE 15 EXPRESSION_SYSTEM: DROSOPHILA MELANOGASTER; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 7227; SOURCE 17 EXPRESSION_SYSTEM_CELL: S2 KEYWDS GLYCOPROTEIN, VIRAL PROTEIN, FUSION PROTEIN, PARAMYXOVIRUS, KEYWDS 2 INHIBITOR, CHEMICAL COMPOUND EXPDTA X-RAY DIFFRACTION AUTHOR T.HASHIGUCHI,Y.FUKUDA,R.MATSUOKA,D.KURODA,M.KUBOTA,Y.SHIROGANE, AUTHOR 2 S.WATANABE,K.TSUMOTO,D.KOHDA,R.K.PLEMPER,Y.YANAGI REVDAT 5 23-MAR-22 5YXW 1 HETSYN REVDAT 4 29-JUL-20 5YXW 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE ATOM REVDAT 3 21-MAR-18 5YXW 1 JRNL REVDAT 2 07-MAR-18 5YXW 1 JRNL REVDAT 1 21-FEB-18 5YXW 0 JRNL AUTH T.HASHIGUCHI,Y.FUKUDA,R.MATSUOKA,D.KURODA,M.KUBOTA, JRNL AUTH 2 Y.SHIROGANE,S.WATANABE,K.TSUMOTO,D.KOHDA,R.K.PLEMPER, JRNL AUTH 3 Y.YANAGI JRNL TITL STRUCTURES OF THE PREFUSION FORM OF MEASLES VIRUS FUSION JRNL TITL 2 PROTEIN IN COMPLEX WITH INHIBITORS. JRNL REF PROC. NATL. ACAD. SCI. V. 115 2496 2018 JRNL REF 2 U.S.A. JRNL REFN ESSN 1091-6490 JRNL PMID 29463726 JRNL DOI 10.1073/PNAS.1718957115 REMARK 2 REMARK 2 RESOLUTION. 2.78 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11_2567) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.78 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 68.34 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 19869 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.110 REMARK 3 FREE R VALUE TEST SET COUNT : 2008 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 68.3570 - 6.6885 1.00 1348 153 0.1872 0.2293 REMARK 3 2 6.6885 - 5.3095 1.00 1290 145 0.2076 0.2312 REMARK 3 3 5.3095 - 4.6385 1.00 1286 144 0.1588 0.2147 REMARK 3 4 4.6385 - 4.2145 1.00 1283 140 0.1593 0.2191 REMARK 3 5 4.2145 - 3.9125 1.00 1268 144 0.1801 0.2203 REMARK 3 6 3.9125 - 3.6818 1.00 1280 144 0.1951 0.2286 REMARK 3 7 3.6818 - 3.4974 1.00 1261 139 0.2037 0.2541 REMARK 3 8 3.4974 - 3.3452 1.00 1251 146 0.2441 0.2921 REMARK 3 9 3.3452 - 3.2164 1.00 1276 146 0.2578 0.3178 REMARK 3 10 3.2164 - 3.1054 1.00 1262 138 0.2528 0.3253 REMARK 3 11 3.1054 - 3.0083 1.00 1275 147 0.2759 0.3439 REMARK 3 12 3.0083 - 2.9223 1.00 1237 140 0.2843 0.3447 REMARK 3 13 2.9223 - 2.8454 1.00 1259 143 0.2944 0.3344 REMARK 3 14 2.8454 - 2.7760 1.00 1285 139 0.3298 0.3863 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.430 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.140 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 3533 REMARK 3 ANGLE : 1.371 4806 REMARK 3 CHIRALITY : 0.086 585 REMARK 3 PLANARITY : 0.010 610 REMARK 3 DIHEDRAL : 17.069 1668 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5YXW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 12-JAN-18. REMARK 100 THE DEPOSITION ID IS D_1300006091. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-DEC-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-1A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 4M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19874 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.776 REMARK 200 RESOLUTION RANGE LOW (A) : 68.336 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 20.80 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 28.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.78 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.79 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM FORMATE, GLYCEROL, SODIUM REMARK 280 ACETATE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 21 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 13555 X+1/2,Y+1/2,Z+1/2 REMARK 290 14555 -X,-Y+1/2,Z REMARK 290 15555 -X+1/2,Y,-Z REMARK 290 16555 X,-Y,-Z+1/2 REMARK 290 17555 Z+1/2,X+1/2,Y+1/2 REMARK 290 18555 Z,-X,-Y+1/2 REMARK 290 19555 -Z,-X+1/2,Y REMARK 290 20555 -Z+1/2,X,-Y REMARK 290 21555 Y+1/2,Z+1/2,X+1/2 REMARK 290 22555 -Y+1/2,Z,-X REMARK 290 23555 Y,-Z,-X+1/2 REMARK 290 24555 -Y,-Z+1/2,X REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 83.69450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 83.69450 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 83.69450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 83.69450 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 83.69450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 83.69450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 83.69450 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 83.69450 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 83.69450 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 83.69450 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 83.69450 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 83.69450 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 83.69450 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 83.69450 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 83.69450 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 83.69450 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 83.69450 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 83.69450 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 83.69450 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 83.69450 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 83.69450 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 83.69450 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 83.69450 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 83.69450 REMARK 290 SMTRY1 17 0.000000 0.000000 1.000000 83.69450 REMARK 290 SMTRY2 17 1.000000 0.000000 0.000000 83.69450 REMARK 290 SMTRY3 17 0.000000 1.000000 0.000000 83.69450 REMARK 290 SMTRY1 18 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 18 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 18 0.000000 -1.000000 0.000000 83.69450 REMARK 290 SMTRY1 19 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 19 -1.000000 0.000000 0.000000 83.69450 REMARK 290 SMTRY3 19 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 20 0.000000 0.000000 -1.000000 83.69450 REMARK 290 SMTRY2 20 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 20 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 21 0.000000 1.000000 0.000000 83.69450 REMARK 290 SMTRY2 21 0.000000 0.000000 1.000000 83.69450 REMARK 290 SMTRY3 21 1.000000 0.000000 0.000000 83.69450 REMARK 290 SMTRY1 22 0.000000 -1.000000 0.000000 83.69450 REMARK 290 SMTRY2 22 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 22 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 23 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 23 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 23 -1.000000 0.000000 0.000000 83.69450 REMARK 290 SMTRY1 24 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 24 0.000000 0.000000 -1.000000 83.69450 REMARK 290 SMTRY3 24 1.000000 0.000000 0.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 46440 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 56780 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -295.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 3 1.000000 0.000000 0.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 19 REMARK 465 ALA A 105 REMARK 465 SER A 106 REMARK 465 SER A 107 REMARK 465 ARG A 108 REMARK 465 ARG A 109 REMARK 465 HIS A 110 REMARK 465 LYS A 111 REMARK 465 ARG A 112 REMARK 465 PHE B 113 REMARK 465 ALA B 114 REMARK 465 GLN B 482 REMARK 465 CYS B 483 REMARK 465 CYS B 484 REMARK 465 ARG B 485 REMARK 465 SER B 486 REMARK 465 MET B 487 REMARK 465 LYS B 488 REMARK 465 GLY B 489 REMARK 465 CYS B 490 REMARK 465 CYS B 491 REMARK 465 SER B 492 REMARK 465 THR B 493 REMARK 465 SER B 494 REMARK 465 LEU B 495 REMARK 465 GLU B 496 REMARK 465 GLY B 497 REMARK 465 ILE B 498 REMARK 465 GLU B 499 REMARK 465 GLY B 500 REMARK 465 ARG B 501 REMARK 465 ALA B 502 REMARK 465 GLY B 503 REMARK 465 TRP B 504 REMARK 465 SER B 505 REMARK 465 HIS B 506 REMARK 465 PRO B 507 REMARK 465 GLN B 508 REMARK 465 PHE B 509 REMARK 465 GLU B 510 REMARK 465 LYS B 511 REMARK 465 GLY B 512 REMARK 465 GLY B 513 REMARK 465 GLY B 514 REMARK 465 SER B 515 REMARK 465 GLY B 516 REMARK 465 GLY B 517 REMARK 465 GLY B 518 REMARK 465 SER B 519 REMARK 465 GLY B 520 REMARK 465 GLY B 521 REMARK 465 GLY B 522 REMARK 465 SER B 523 REMARK 465 TRP B 524 REMARK 465 SER B 525 REMARK 465 HIS B 526 REMARK 465 PRO B 527 REMARK 465 GLN B 528 REMARK 465 PHE B 529 REMARK 465 GLU B 530 REMARK 465 LYS B 531 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP B 481 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG A 48 O GLY B 264 2.15 REMARK 500 O TYR B 324 NH2 ARG B 360 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 48 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 50 -161.53 64.78 REMARK 500 SER A 103 2.14 -61.80 REMARK 500 ASN B 158 19.35 -143.98 REMARK 500 ASP B 241 148.15 -170.96 REMARK 500 TYR B 277 70.58 61.94 REMARK 500 VAL B 371 86.52 -65.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ILE B 291 LYS B 292 -135.97 REMARK 500 LEU B 370 VAL B 371 142.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CHAIN B INCLUDES FOUR MUTATIONS I483C, L484C, L490C, S491C AND REMARK 999 TAG SEQUENCE (RESIDUES 495-531). DBREF 5YXW A 20 112 UNP Q786F3 FUS_MEASC 20 112 DBREF 5YXW B 113 482 UNP Q786F3 FUS_MEASC 113 482 DBREF 5YXW B 483 531 PDB 5YXW 5YXW 483 531 SEQADV 5YXW GLY A 19 UNP Q786F3 EXPRESSION TAG SEQRES 1 A 94 GLY THR PRO THR GLY GLN ILE HIS TRP GLY ASN LEU SER SEQRES 2 A 94 LYS ILE GLY VAL VAL GLY ILE GLY SER ALA SER TYR LYS SEQRES 3 A 94 VAL MET THR ARG SER SER HIS GLN SER LEU VAL ILE LYS SEQRES 4 A 94 LEU MET PRO ASN ILE THR LEU LEU ASN ASN CYS THR ARG SEQRES 5 A 94 VAL GLU ILE ALA GLU TYR ARG ARG LEU LEU ARG THR VAL SEQRES 6 A 94 LEU GLU PRO ILE ARG ASP ALA LEU ASN ALA MET THR GLN SEQRES 7 A 94 ASN ILE ARG PRO VAL GLN SER VAL ALA SER SER ARG ARG SEQRES 8 A 94 HIS LYS ARG SEQRES 1 B 419 PHE ALA GLY VAL VAL LEU ALA GLY ALA ALA LEU GLY VAL SEQRES 2 B 419 ALA THR ALA ALA GLN ILE THR ALA GLY ILE ALA LEU HIS SEQRES 3 B 419 GLN SER MET LEU ASN SER GLN ALA ILE ASP ASN LEU ARG SEQRES 4 B 419 ALA SER LEU GLU THR THR ASN GLN ALA ILE GLU ALA ILE SEQRES 5 B 419 ARG GLN ALA GLY GLN GLU MET ILE LEU ALA VAL GLN GLY SEQRES 6 B 419 VAL GLN ASP TYR ILE ASN ASN GLU LEU ILE PRO SER MET SEQRES 7 B 419 ASN GLN LEU SER CYS ASP LEU ILE GLY GLN LYS LEU GLY SEQRES 8 B 419 LEU LYS LEU LEU ARG TYR TYR THR GLU ILE LEU SER LEU SEQRES 9 B 419 PHE GLY PRO SER LEU ARG ASP PRO ILE SER ALA GLU ILE SEQRES 10 B 419 SER ILE GLN ALA LEU SER TYR ALA LEU GLY GLY ASP ILE SEQRES 11 B 419 ASN LYS VAL LEU GLU LYS LEU GLY TYR SER GLY GLY ASP SEQRES 12 B 419 LEU LEU GLY ILE LEU GLU SER ARG GLY ILE LYS ALA ARG SEQRES 13 B 419 ILE THR HIS VAL ASP THR GLU SER TYR PHE ILE VAL LEU SEQRES 14 B 419 SER ILE ALA TYR PRO THR LEU SER GLU ILE LYS GLY VAL SEQRES 15 B 419 ILE VAL HIS ARG LEU GLU GLY VAL SER TYR ASN ILE GLY SEQRES 16 B 419 SER GLN GLU TRP TYR THR THR VAL PRO LYS TYR VAL ALA SEQRES 17 B 419 THR GLN GLY TYR LEU ILE SER ASN PHE ASP GLU SER SER SEQRES 18 B 419 CYS THR PHE MET PRO GLU GLY THR VAL CYS SER GLN ASN SEQRES 19 B 419 ALA LEU TYR PRO MET SER PRO LEU LEU GLN GLU CYS LEU SEQRES 20 B 419 ARG GLY SER THR LYS SER CYS ALA ARG THR LEU VAL SER SEQRES 21 B 419 GLY SER PHE GLY ASN ARG PHE ILE LEU SER GLN GLY ASN SEQRES 22 B 419 LEU ILE ALA ASN CYS ALA SER ILE LEU CYS LYS CYS TYR SEQRES 23 B 419 THR THR GLY THR ILE ILE ASN GLN ASP PRO ASP LYS ILE SEQRES 24 B 419 LEU THR TYR ILE ALA ALA ASP HIS CYS PRO VAL VAL GLU SEQRES 25 B 419 VAL ASN GLY VAL THR ILE GLN VAL GLY SER ARG ARG TYR SEQRES 26 B 419 PRO ASP ALA VAL TYR LEU HIS ARG ILE ASP LEU GLY PRO SEQRES 27 B 419 PRO ILE SER LEU GLU ARG LEU ASP VAL GLY THR ASN LEU SEQRES 28 B 419 GLY ASN ALA ILE ALA LYS LEU GLU ASP ALA LYS GLU LEU SEQRES 29 B 419 LEU GLU SER SER ASP GLN CYS CYS ARG SER MET LYS GLY SEQRES 30 B 419 CYS CYS SER THR SER LEU GLU GLY ILE GLU GLY ARG ALA SEQRES 31 B 419 GLY TRP SER HIS PRO GLN PHE GLU LYS GLY GLY GLY SER SEQRES 32 B 419 GLY GLY GLY SER GLY GLY GLY SER TRP SER HIS PRO GLN SEQRES 33 B 419 PHE GLU LYS HET NAG C 1 14 HET NAG C 2 14 HET NAG A 203 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 3 NAG 3(C8 H15 N O6) FORMUL 5 HOH *7(H2 O) HELIX 1 AA1 HIS A 26 LYS A 32 1 7 HELIX 2 AA2 ILE A 62 ASN A 66 5 5 HELIX 3 AA3 THR A 69 GLN A 96 1 28 HELIX 4 AA4 GLN A 102 VAL A 104 5 3 HELIX 5 AA5 ALA B 119 GLY B 124 1 6 HELIX 6 AA6 THR B 127 MET B 141 1 15 HELIX 7 AA7 ASN B 143 THR B 156 1 14 HELIX 8 AA8 VAL B 178 LEU B 186 1 9 HELIX 9 AA9 ILE B 187 MET B 190 5 4 HELIX 10 AB1 SER B 194 GLY B 218 1 25 HELIX 11 AB2 GLN B 232 SER B 235 5 4 HELIX 12 AB3 ILE B 242 LEU B 249 1 8 HELIX 13 AB4 ASP B 255 ARG B 263 1 9 HELIX 14 AB5 SER B 352 ARG B 360 1 9 HELIX 15 AB6 GLY B 361 CYS B 366 5 6 HELIX 16 AB7 TYR B 442 ILE B 446 5 5 HELIX 17 AB8 GLU B 455 SER B 480 1 26 SHEET 1 AA1 6 ILE B 161 ILE B 164 0 SHEET 2 AA1 6 ILE B 172 GLN B 176 -1 O ILE B 172 N ILE B 164 SHEET 3 AA1 6 VAL A 35 LYS A 57 1 N LYS A 57 O VAL B 175 SHEET 4 AA1 6 PHE B 278 GLY B 301 -1 O LEU B 281 N LEU A 54 SHEET 5 AA1 6 GLY B 340 CYS B 343 0 SHEET 6 AA1 6 CYS B 334 MET B 337 -1 N THR B 335 O VAL B 342 SHEET 1 AA2 7 ILE B 229 SER B 230 0 SHEET 2 AA2 7 LYS B 266 ASP B 273 -1 O ALA B 267 N ILE B 229 SHEET 3 AA2 7 PHE B 278 GLY B 301 -1 O VAL B 280 N HIS B 271 SHEET 4 AA2 7 VAL A 35 LYS A 57 -1 N LEU A 54 O LEU B 281 SHEET 5 AA2 7 TYR B 318 GLN B 322 0 SHEET 6 AA2 7 LEU B 325 PHE B 329 -1 O SER B 327 N ALA B 320 SHEET 7 AA2 7 LEU B 348 TYR B 349 -1 O TYR B 349 N ASN B 328 SHEET 1 AA3 2 ILE A 98 PRO A 100 0 SHEET 2 AA3 2 VAL B 116 LEU B 118 -1 O VAL B 117 N ARG A 99 SHEET 1 AA4 3 TYR B 304 ILE B 306 0 SHEET 2 AA4 3 GLN B 309 THR B 313 -1 O TRP B 311 N TYR B 304 SHEET 3 AA4 3 ARG B 368 LEU B 370 -1 O THR B 369 N TYR B 312 SHEET 1 AA5 3 PHE B 379 SER B 382 0 SHEET 2 AA5 3 ASN B 385 ALA B 388 -1 O ASN B 385 N SER B 382 SHEET 3 AA5 3 THR B 413 ILE B 415 -1 O ILE B 415 N LEU B 386 SHEET 1 AA6 4 ILE B 403 ILE B 404 0 SHEET 2 AA6 4 CYS B 395 CYS B 397 -1 N CYS B 395 O ILE B 404 SHEET 3 AA6 4 VAL B 422 VAL B 425 -1 O GLU B 424 N LYS B 396 SHEET 4 AA6 4 VAL B 428 GLN B 431 -1 O VAL B 428 N VAL B 425 SSBOND 1 CYS A 68 CYS B 195 1555 1555 2.08 SSBOND 2 CYS B 334 CYS B 343 1555 1555 2.07 SSBOND 3 CYS B 358 CYS B 366 1555 1555 2.02 SSBOND 4 CYS B 390 CYS B 395 1555 1555 2.05 SSBOND 5 CYS B 397 CYS B 420 1555 1555 2.09 LINK ND2 ASN A 29 C1 NAG C 1 1555 1555 1.45 LINK ND2 ASN A 61 C1 NAG A 203 1555 1555 1.44 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.47 CRYST1 167.389 167.389 167.389 90.00 90.00 90.00 I 21 3 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005974 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005974 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005974 0.00000