data_5YXZ # _entry.id 5YXZ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.397 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5YXZ pdb_00005yxz 10.2210/pdb5yxz/pdb WWPDB D_1300006107 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2018-04-18 2 'Structure model' 1 1 2023-11-22 3 'Structure model' 1 2 2024-10-30 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Derived calculations' 4 2 'Structure model' 'Refinement description' 5 2 'Structure model' 'Structure summary' 6 3 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp 2 2 'Structure model' chem_comp_atom 3 2 'Structure model' chem_comp_bond 4 2 'Structure model' database_2 5 2 'Structure model' entity 6 2 'Structure model' pdbx_entity_nonpoly 7 2 'Structure model' pdbx_initial_refinement_model 8 2 'Structure model' pdbx_struct_conn_angle 9 2 'Structure model' struct_conn 10 3 'Structure model' pdbx_entry_details 11 3 'Structure model' pdbx_modification_feature # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_chem_comp.name' 2 2 'Structure model' '_database_2.pdbx_DOI' 3 2 'Structure model' '_database_2.pdbx_database_accession' 4 2 'Structure model' '_entity.pdbx_description' 5 2 'Structure model' '_pdbx_entity_nonpoly.name' 6 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 7 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 8 2 'Structure model' '_pdbx_struct_conn_angle.value' 9 2 'Structure model' '_struct_conn.pdbx_dist_value' 10 2 'Structure model' '_struct_conn.ptnr2_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5YXZ _pdbx_database_status.recvd_initial_deposition_date 2017-12-07 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Swaminathan, S.' 1 ? 'Thakur, M.K.' 2 ? 'Kandan, S.' 3 ? 'Gautam, A.' 4 ? 'Kanavalli, M.' 5 ? 'Simhadri, P.' 6 ? 'Gosu, R.' 7 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Co-crystal Structure of KRAS (G12C) covalently bound with Quinazoline based inhibitor JBI484' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Swaminathan, S.' 1 ? primary 'Thakur, M.K.' 2 ? primary 'Kandan, S.' 3 ? primary 'Gautam, A.' 4 ? primary 'Kanavalli, M.' 5 ? primary 'Simhadri, P.' 6 ? primary 'Gosu, R.' 7 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'GTPase KRas' 19352.785 1 ? C51S,C80L,C118S ? ? 2 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 3 non-polymer syn "GUANOSINE-5'-DIPHOSPHATE" 443.201 1 ? ? ? ? 4 non-polymer syn '1-[4-[6-chloranyl-8-fluoranyl-7-(2-fluorophenyl)quinazolin-4-yl]piperazin-1-yl]propan-1-one' 416.852 1 ? ? ? ? 5 non-polymer syn 1,2-ETHANEDIOL 62.068 1 ? ? ? ? 6 water nat water 18.015 141 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'K-Ras 2,Ki-Ras,c-K-ras,c-Ki-ras' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GMTEYKLVVVGACGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETSLLDILDTAGQEEYSAMRDQYMRTGEGFL LVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTL VREIRKHKEK ; _entity_poly.pdbx_seq_one_letter_code_can ;GMTEYKLVVVGACGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETSLLDILDTAGQEEYSAMRDQYMRTGEGFL LVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTL VREIRKHKEK ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MAGNESIUM ION' MG 3 "GUANOSINE-5'-DIPHOSPHATE" GDP 4 '1-[4-[6-chloranyl-8-fluoranyl-7-(2-fluorophenyl)quinazolin-4-yl]piperazin-1-yl]propan-1-one' 94C 5 1,2-ETHANEDIOL EDO 6 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 MET n 1 3 THR n 1 4 GLU n 1 5 TYR n 1 6 LYS n 1 7 LEU n 1 8 VAL n 1 9 VAL n 1 10 VAL n 1 11 GLY n 1 12 ALA n 1 13 CYS n 1 14 GLY n 1 15 VAL n 1 16 GLY n 1 17 LYS n 1 18 SER n 1 19 ALA n 1 20 LEU n 1 21 THR n 1 22 ILE n 1 23 GLN n 1 24 LEU n 1 25 ILE n 1 26 GLN n 1 27 ASN n 1 28 HIS n 1 29 PHE n 1 30 VAL n 1 31 ASP n 1 32 GLU n 1 33 TYR n 1 34 ASP n 1 35 PRO n 1 36 THR n 1 37 ILE n 1 38 GLU n 1 39 ASP n 1 40 SER n 1 41 TYR n 1 42 ARG n 1 43 LYS n 1 44 GLN n 1 45 VAL n 1 46 VAL n 1 47 ILE n 1 48 ASP n 1 49 GLY n 1 50 GLU n 1 51 THR n 1 52 SER n 1 53 LEU n 1 54 LEU n 1 55 ASP n 1 56 ILE n 1 57 LEU n 1 58 ASP n 1 59 THR n 1 60 ALA n 1 61 GLY n 1 62 GLN n 1 63 GLU n 1 64 GLU n 1 65 TYR n 1 66 SER n 1 67 ALA n 1 68 MET n 1 69 ARG n 1 70 ASP n 1 71 GLN n 1 72 TYR n 1 73 MET n 1 74 ARG n 1 75 THR n 1 76 GLY n 1 77 GLU n 1 78 GLY n 1 79 PHE n 1 80 LEU n 1 81 LEU n 1 82 VAL n 1 83 PHE n 1 84 ALA n 1 85 ILE n 1 86 ASN n 1 87 ASN n 1 88 THR n 1 89 LYS n 1 90 SER n 1 91 PHE n 1 92 GLU n 1 93 ASP n 1 94 ILE n 1 95 HIS n 1 96 HIS n 1 97 TYR n 1 98 ARG n 1 99 GLU n 1 100 GLN n 1 101 ILE n 1 102 LYS n 1 103 ARG n 1 104 VAL n 1 105 LYS n 1 106 ASP n 1 107 SER n 1 108 GLU n 1 109 ASP n 1 110 VAL n 1 111 PRO n 1 112 MET n 1 113 VAL n 1 114 LEU n 1 115 VAL n 1 116 GLY n 1 117 ASN n 1 118 LYS n 1 119 SER n 1 120 ASP n 1 121 LEU n 1 122 PRO n 1 123 SER n 1 124 ARG n 1 125 THR n 1 126 VAL n 1 127 ASP n 1 128 THR n 1 129 LYS n 1 130 GLN n 1 131 ALA n 1 132 GLN n 1 133 ASP n 1 134 LEU n 1 135 ALA n 1 136 ARG n 1 137 SER n 1 138 TYR n 1 139 GLY n 1 140 ILE n 1 141 PRO n 1 142 PHE n 1 143 ILE n 1 144 GLU n 1 145 THR n 1 146 SER n 1 147 ALA n 1 148 LYS n 1 149 THR n 1 150 ARG n 1 151 GLN n 1 152 GLY n 1 153 VAL n 1 154 ASP n 1 155 ASP n 1 156 ALA n 1 157 PHE n 1 158 TYR n 1 159 THR n 1 160 LEU n 1 161 VAL n 1 162 ARG n 1 163 GLU n 1 164 ILE n 1 165 ARG n 1 166 LYS n 1 167 HIS n 1 168 LYS n 1 169 GLU n 1 170 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 170 _entity_src_gen.gene_src_common_name Human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'KRAS, KRAS2, RASK2' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 94C non-polymer . '1-[4-[6-chloranyl-8-fluoranyl-7-(2-fluorophenyl)quinazolin-4-yl]piperazin-1-yl]propan-1-one' ? 'C21 H19 Cl F2 N4 O' 416.852 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 GDP 'RNA linking' n "GUANOSINE-5'-DIPHOSPHATE" ? 'C10 H15 N5 O11 P2' 443.201 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 0 0 GLY GLY A . n A 1 2 MET 2 1 1 MET MET A . n A 1 3 THR 3 2 2 THR THR A . n A 1 4 GLU 4 3 3 GLU GLU A . n A 1 5 TYR 5 4 4 TYR TYR A . n A 1 6 LYS 6 5 5 LYS LYS A . n A 1 7 LEU 7 6 6 LEU LEU A . n A 1 8 VAL 8 7 7 VAL VAL A . n A 1 9 VAL 9 8 8 VAL VAL A . n A 1 10 VAL 10 9 9 VAL VAL A . n A 1 11 GLY 11 10 10 GLY GLY A . n A 1 12 ALA 12 11 11 ALA ALA A . n A 1 13 CYS 13 12 12 CYS CYS A . n A 1 14 GLY 14 13 13 GLY GLY A . n A 1 15 VAL 15 14 14 VAL VAL A . n A 1 16 GLY 16 15 15 GLY GLY A . n A 1 17 LYS 17 16 16 LYS LYS A . n A 1 18 SER 18 17 17 SER SER A . n A 1 19 ALA 19 18 18 ALA ALA A . n A 1 20 LEU 20 19 19 LEU LEU A . n A 1 21 THR 21 20 20 THR THR A . n A 1 22 ILE 22 21 21 ILE ILE A . n A 1 23 GLN 23 22 22 GLN GLN A . n A 1 24 LEU 24 23 23 LEU LEU A . n A 1 25 ILE 25 24 24 ILE ILE A . n A 1 26 GLN 26 25 25 GLN GLN A . n A 1 27 ASN 27 26 26 ASN ASN A . n A 1 28 HIS 28 27 27 HIS HIS A . n A 1 29 PHE 29 28 28 PHE PHE A . n A 1 30 VAL 30 29 29 VAL VAL A . n A 1 31 ASP 31 30 30 ASP ASP A . n A 1 32 GLU 32 31 31 GLU GLU A . n A 1 33 TYR 33 32 32 TYR TYR A . n A 1 34 ASP 34 33 33 ASP ASP A . n A 1 35 PRO 35 34 34 PRO PRO A . n A 1 36 THR 36 35 35 THR THR A . n A 1 37 ILE 37 36 36 ILE ILE A . n A 1 38 GLU 38 37 37 GLU GLU A . n A 1 39 ASP 39 38 38 ASP ASP A . n A 1 40 SER 40 39 39 SER SER A . n A 1 41 TYR 41 40 40 TYR TYR A . n A 1 42 ARG 42 41 41 ARG ARG A . n A 1 43 LYS 43 42 42 LYS LYS A . n A 1 44 GLN 44 43 43 GLN GLN A . n A 1 45 VAL 45 44 44 VAL VAL A . n A 1 46 VAL 46 45 45 VAL VAL A . n A 1 47 ILE 47 46 46 ILE ILE A . n A 1 48 ASP 48 47 47 ASP ASP A . n A 1 49 GLY 49 48 48 GLY GLY A . n A 1 50 GLU 50 49 49 GLU GLU A . n A 1 51 THR 51 50 50 THR THR A . n A 1 52 SER 52 51 51 SER SER A . n A 1 53 LEU 53 52 52 LEU LEU A . n A 1 54 LEU 54 53 53 LEU LEU A . n A 1 55 ASP 55 54 54 ASP ASP A . n A 1 56 ILE 56 55 55 ILE ILE A . n A 1 57 LEU 57 56 56 LEU LEU A . n A 1 58 ASP 58 57 57 ASP ASP A . n A 1 59 THR 59 58 58 THR THR A . n A 1 60 ALA 60 59 59 ALA ALA A . n A 1 61 GLY 61 60 60 GLY GLY A . n A 1 62 GLN 62 61 61 GLN GLN A . n A 1 63 GLU 63 62 62 GLU GLU A . n A 1 64 GLU 64 63 63 GLU GLU A . n A 1 65 TYR 65 64 64 TYR TYR A . n A 1 66 SER 66 65 65 SER SER A . n A 1 67 ALA 67 66 66 ALA ALA A . n A 1 68 MET 68 67 67 MET MET A . n A 1 69 ARG 69 68 68 ARG ARG A . n A 1 70 ASP 70 69 69 ASP ASP A . n A 1 71 GLN 71 70 70 GLN GLN A . n A 1 72 TYR 72 71 71 TYR TYR A . n A 1 73 MET 73 72 72 MET MET A . n A 1 74 ARG 74 73 73 ARG ARG A . n A 1 75 THR 75 74 74 THR THR A . n A 1 76 GLY 76 75 75 GLY GLY A . n A 1 77 GLU 77 76 76 GLU GLU A . n A 1 78 GLY 78 77 77 GLY GLY A . n A 1 79 PHE 79 78 78 PHE PHE A . n A 1 80 LEU 80 79 79 LEU LEU A . n A 1 81 LEU 81 80 80 LEU LEU A . n A 1 82 VAL 82 81 81 VAL VAL A . n A 1 83 PHE 83 82 82 PHE PHE A . n A 1 84 ALA 84 83 83 ALA ALA A . n A 1 85 ILE 85 84 84 ILE ILE A . n A 1 86 ASN 86 85 85 ASN ASN A . n A 1 87 ASN 87 86 86 ASN ASN A . n A 1 88 THR 88 87 87 THR THR A . n A 1 89 LYS 89 88 88 LYS LYS A . n A 1 90 SER 90 89 89 SER SER A . n A 1 91 PHE 91 90 90 PHE PHE A . n A 1 92 GLU 92 91 91 GLU GLU A . n A 1 93 ASP 93 92 92 ASP ASP A . n A 1 94 ILE 94 93 93 ILE ILE A . n A 1 95 HIS 95 94 94 HIS HIS A . n A 1 96 HIS 96 95 95 HIS HIS A . n A 1 97 TYR 97 96 96 TYR TYR A . n A 1 98 ARG 98 97 97 ARG ARG A . n A 1 99 GLU 99 98 98 GLU GLU A . n A 1 100 GLN 100 99 99 GLN GLN A . n A 1 101 ILE 101 100 100 ILE ILE A . n A 1 102 LYS 102 101 101 LYS LYS A . n A 1 103 ARG 103 102 102 ARG ARG A . n A 1 104 VAL 104 103 103 VAL VAL A . n A 1 105 LYS 105 104 104 LYS LYS A . n A 1 106 ASP 106 105 105 ASP ASP A . n A 1 107 SER 107 106 106 SER SER A . n A 1 108 GLU 108 107 107 GLU GLU A . n A 1 109 ASP 109 108 108 ASP ASP A . n A 1 110 VAL 110 109 109 VAL VAL A . n A 1 111 PRO 111 110 110 PRO PRO A . n A 1 112 MET 112 111 111 MET MET A . n A 1 113 VAL 113 112 112 VAL VAL A . n A 1 114 LEU 114 113 113 LEU LEU A . n A 1 115 VAL 115 114 114 VAL VAL A . n A 1 116 GLY 116 115 115 GLY GLY A . n A 1 117 ASN 117 116 116 ASN ASN A . n A 1 118 LYS 118 117 117 LYS LYS A . n A 1 119 SER 119 118 118 SER SER A . n A 1 120 ASP 120 119 119 ASP ASP A . n A 1 121 LEU 121 120 120 LEU LEU A . n A 1 122 PRO 122 121 121 PRO PRO A . n A 1 123 SER 123 122 122 SER SER A . n A 1 124 ARG 124 123 123 ARG ARG A . n A 1 125 THR 125 124 124 THR THR A . n A 1 126 VAL 126 125 125 VAL VAL A . n A 1 127 ASP 127 126 126 ASP ASP A . n A 1 128 THR 128 127 127 THR THR A . n A 1 129 LYS 129 128 128 LYS LYS A . n A 1 130 GLN 130 129 129 GLN GLN A . n A 1 131 ALA 131 130 130 ALA ALA A . n A 1 132 GLN 132 131 131 GLN GLN A . n A 1 133 ASP 133 132 132 ASP ASP A . n A 1 134 LEU 134 133 133 LEU LEU A . n A 1 135 ALA 135 134 134 ALA ALA A . n A 1 136 ARG 136 135 135 ARG ARG A . n A 1 137 SER 137 136 136 SER SER A . n A 1 138 TYR 138 137 137 TYR TYR A . n A 1 139 GLY 139 138 138 GLY GLY A . n A 1 140 ILE 140 139 139 ILE ILE A . n A 1 141 PRO 141 140 140 PRO PRO A . n A 1 142 PHE 142 141 141 PHE PHE A . n A 1 143 ILE 143 142 142 ILE ILE A . n A 1 144 GLU 144 143 143 GLU GLU A . n A 1 145 THR 145 144 144 THR THR A . n A 1 146 SER 146 145 145 SER SER A . n A 1 147 ALA 147 146 146 ALA ALA A . n A 1 148 LYS 148 147 147 LYS LYS A . n A 1 149 THR 149 148 148 THR THR A . n A 1 150 ARG 150 149 149 ARG ARG A . n A 1 151 GLN 151 150 150 GLN GLN A . n A 1 152 GLY 152 151 151 GLY GLY A . n A 1 153 VAL 153 152 152 VAL VAL A . n A 1 154 ASP 154 153 153 ASP ASP A . n A 1 155 ASP 155 154 154 ASP ASP A . n A 1 156 ALA 156 155 155 ALA ALA A . n A 1 157 PHE 157 156 156 PHE PHE A . n A 1 158 TYR 158 157 157 TYR TYR A . n A 1 159 THR 159 158 158 THR THR A . n A 1 160 LEU 160 159 159 LEU LEU A . n A 1 161 VAL 161 160 160 VAL VAL A . n A 1 162 ARG 162 161 161 ARG ARG A . n A 1 163 GLU 163 162 162 GLU GLU A . n A 1 164 ILE 164 163 163 ILE ILE A . n A 1 165 ARG 165 164 164 ARG ARG A . n A 1 166 LYS 166 165 165 LYS LYS A . n A 1 167 HIS 167 166 166 HIS HIS A . n A 1 168 LYS 168 167 167 LYS LYS A . n A 1 169 GLU 169 168 168 GLU GLU A . n A 1 170 LYS 170 169 169 LYS LYS A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG 1 201 199 MG MG A . C 3 GDP 1 202 200 GDP GDP A . D 4 94C 1 203 201 94C UNL A . E 5 EDO 1 204 1 EDO EDO A . F 6 HOH 1 301 128 HOH HOH A . F 6 HOH 2 302 58 HOH HOH A . F 6 HOH 3 303 109 HOH HOH A . F 6 HOH 4 304 35 HOH HOH A . F 6 HOH 5 305 36 HOH HOH A . F 6 HOH 6 306 52 HOH HOH A . F 6 HOH 7 307 133 HOH HOH A . F 6 HOH 8 308 124 HOH HOH A . F 6 HOH 9 309 24 HOH HOH A . F 6 HOH 10 310 141 HOH HOH A . F 6 HOH 11 311 46 HOH HOH A . F 6 HOH 12 312 88 HOH HOH A . F 6 HOH 13 313 127 HOH HOH A . F 6 HOH 14 314 62 HOH HOH A . F 6 HOH 15 315 117 HOH HOH A . F 6 HOH 16 316 107 HOH HOH A . F 6 HOH 17 317 105 HOH HOH A . F 6 HOH 18 318 59 HOH HOH A . F 6 HOH 19 319 54 HOH HOH A . F 6 HOH 20 320 50 HOH HOH A . F 6 HOH 21 321 53 HOH HOH A . F 6 HOH 22 322 14 HOH HOH A . F 6 HOH 23 323 38 HOH HOH A . F 6 HOH 24 324 56 HOH HOH A . F 6 HOH 25 325 55 HOH HOH A . F 6 HOH 26 326 8 HOH HOH A . F 6 HOH 27 327 5 HOH HOH A . F 6 HOH 28 328 28 HOH HOH A . F 6 HOH 29 329 115 HOH HOH A . F 6 HOH 30 330 45 HOH HOH A . F 6 HOH 31 331 20 HOH HOH A . F 6 HOH 32 332 139 HOH HOH A . F 6 HOH 33 333 73 HOH HOH A . F 6 HOH 34 334 13 HOH HOH A . F 6 HOH 35 335 15 HOH HOH A . F 6 HOH 36 336 10 HOH HOH A . F 6 HOH 37 337 110 HOH HOH A . F 6 HOH 38 338 32 HOH HOH A . F 6 HOH 39 339 30 HOH HOH A . F 6 HOH 40 340 98 HOH HOH A . F 6 HOH 41 341 27 HOH HOH A . F 6 HOH 42 342 49 HOH HOH A . F 6 HOH 43 343 80 HOH HOH A . F 6 HOH 44 344 112 HOH HOH A . F 6 HOH 45 345 77 HOH HOH A . F 6 HOH 46 346 2 HOH HOH A . F 6 HOH 47 347 138 HOH HOH A . F 6 HOH 48 348 26 HOH HOH A . F 6 HOH 49 349 79 HOH HOH A . F 6 HOH 50 350 43 HOH HOH A . F 6 HOH 51 351 42 HOH HOH A . F 6 HOH 52 352 16 HOH HOH A . F 6 HOH 53 353 51 HOH HOH A . F 6 HOH 54 354 11 HOH HOH A . F 6 HOH 55 355 103 HOH HOH A . F 6 HOH 56 356 126 HOH HOH A . F 6 HOH 57 357 91 HOH HOH A . F 6 HOH 58 358 60 HOH HOH A . F 6 HOH 59 359 22 HOH HOH A . F 6 HOH 60 360 120 HOH HOH A . F 6 HOH 61 361 95 HOH HOH A . F 6 HOH 62 362 66 HOH HOH A . F 6 HOH 63 363 114 HOH HOH A . F 6 HOH 64 364 57 HOH HOH A . F 6 HOH 65 365 21 HOH HOH A . F 6 HOH 66 366 37 HOH HOH A . F 6 HOH 67 367 4 HOH HOH A . F 6 HOH 68 368 12 HOH HOH A . F 6 HOH 69 369 129 HOH HOH A . F 6 HOH 70 370 118 HOH HOH A . F 6 HOH 71 371 1 HOH HOH A . F 6 HOH 72 372 25 HOH HOH A . F 6 HOH 73 373 29 HOH HOH A . F 6 HOH 74 374 134 HOH HOH A . F 6 HOH 75 375 19 HOH HOH A . F 6 HOH 76 376 6 HOH HOH A . F 6 HOH 77 377 39 HOH HOH A . F 6 HOH 78 378 119 HOH HOH A . F 6 HOH 79 379 18 HOH HOH A . F 6 HOH 80 380 96 HOH HOH A . F 6 HOH 81 381 116 HOH HOH A . F 6 HOH 82 382 61 HOH HOH A . F 6 HOH 83 383 40 HOH HOH A . F 6 HOH 84 384 69 HOH HOH A . F 6 HOH 85 385 140 HOH HOH A . F 6 HOH 86 386 137 HOH HOH A . F 6 HOH 87 387 9 HOH HOH A . F 6 HOH 88 388 92 HOH HOH A . F 6 HOH 89 389 71 HOH HOH A . F 6 HOH 90 390 67 HOH HOH A . F 6 HOH 91 391 64 HOH HOH A . F 6 HOH 92 392 17 HOH HOH A . F 6 HOH 93 393 23 HOH HOH A . F 6 HOH 94 394 106 HOH HOH A . F 6 HOH 95 395 85 HOH HOH A . F 6 HOH 96 396 81 HOH HOH A . F 6 HOH 97 397 47 HOH HOH A . F 6 HOH 98 398 75 HOH HOH A . F 6 HOH 99 399 78 HOH HOH A . F 6 HOH 100 400 84 HOH HOH A . F 6 HOH 101 401 125 HOH HOH A . F 6 HOH 102 402 7 HOH HOH A . F 6 HOH 103 403 68 HOH HOH A . F 6 HOH 104 404 93 HOH HOH A . F 6 HOH 105 405 3 HOH HOH A . F 6 HOH 106 406 31 HOH HOH A . F 6 HOH 107 407 33 HOH HOH A . F 6 HOH 108 408 44 HOH HOH A . F 6 HOH 109 409 100 HOH HOH A . F 6 HOH 110 410 48 HOH HOH A . F 6 HOH 111 411 83 HOH HOH A . F 6 HOH 112 412 65 HOH HOH A . F 6 HOH 113 413 99 HOH HOH A . F 6 HOH 114 414 90 HOH HOH A . F 6 HOH 115 415 74 HOH HOH A . F 6 HOH 116 416 70 HOH HOH A . F 6 HOH 117 417 123 HOH HOH A . F 6 HOH 118 418 34 HOH HOH A . F 6 HOH 119 419 102 HOH HOH A . F 6 HOH 120 420 82 HOH HOH A . F 6 HOH 121 421 101 HOH HOH A . F 6 HOH 122 422 111 HOH HOH A . F 6 HOH 123 423 76 HOH HOH A . F 6 HOH 124 424 122 HOH HOH A . F 6 HOH 125 425 89 HOH HOH A . F 6 HOH 126 426 41 HOH HOH A . F 6 HOH 127 427 132 HOH HOH A . F 6 HOH 128 428 72 HOH HOH A . F 6 HOH 129 429 130 HOH HOH A . F 6 HOH 130 430 121 HOH HOH A . F 6 HOH 131 431 87 HOH HOH A . F 6 HOH 132 432 135 HOH HOH A . F 6 HOH 133 433 108 HOH HOH A . F 6 HOH 134 434 131 HOH HOH A . F 6 HOH 135 435 86 HOH HOH A . F 6 HOH 136 436 97 HOH HOH A . F 6 HOH 137 437 63 HOH HOH A . F 6 HOH 138 438 136 HOH HOH A . F 6 HOH 139 439 142 HOH HOH A . F 6 HOH 140 440 94 HOH HOH A . F 6 HOH 141 441 113 HOH HOH A . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLU 31 ? CG ? A GLU 32 CG 2 1 Y 1 A GLU 31 ? CD ? A GLU 32 CD 3 1 Y 1 A GLU 31 ? OE1 ? A GLU 32 OE1 4 1 Y 1 A GLU 31 ? OE2 ? A GLU 32 OE2 5 1 Y 1 A GLU 63 ? CG ? A GLU 64 CG 6 1 Y 1 A GLU 63 ? CD ? A GLU 64 CD 7 1 Y 1 A GLU 63 ? OE1 ? A GLU 64 OE1 8 1 Y 1 A GLU 63 ? OE2 ? A GLU 64 OE2 9 1 Y 1 A MET 67 ? CG ? A MET 68 CG 10 1 Y 1 A MET 67 ? SD ? A MET 68 SD 11 1 Y 1 A MET 67 ? CE ? A MET 68 CE 12 1 Y 1 A LYS 88 ? CD ? A LYS 89 CD 13 1 Y 1 A LYS 88 ? CE ? A LYS 89 CE 14 1 Y 1 A LYS 88 ? NZ ? A LYS 89 NZ 15 1 Y 1 A LYS 101 ? CD ? A LYS 102 CD 16 1 Y 1 A LYS 101 ? CE ? A LYS 102 CE 17 1 Y 1 A LYS 101 ? NZ ? A LYS 102 NZ 18 1 Y 1 A ARG 102 ? NH1 ? A ARG 103 NH1 19 1 Y 1 A ARG 102 ? NH2 ? A ARG 103 NH2 20 1 Y 1 A LYS 169 ? NZ ? A LYS 170 NZ # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.2.0005 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? v706 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? v706 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? MOLREP ? ? ? . 4 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 5YXZ _cell.details ? _cell.formula_units_Z ? _cell.length_a 41.604 _cell.length_a_esd ? _cell.length_b 53.089 _cell.length_b_esd ? _cell.length_c 69.106 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 4 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 5YXZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5YXZ _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 1.97 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 37.62 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 295 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.15M K Bromide, 30% w/v PEG MME 2000' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details 'Varimax HR' _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'MAR scanner 345 mm plate' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2017-07-18 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.54178 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source 'ROTATING ANODE' _diffrn_source.target ? _diffrn_source.type 'RIGAKU MICROMAX-007 HF' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.54178 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_synchrotron_site ? # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 5YXZ _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.70 _reflns.d_resolution_low 50.00 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 17506 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 96.2 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 4.7 _reflns.pdbx_Rmerge_I_obs 0.099 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 14.8 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all 0.048 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 1.70 _reflns_shell.d_res_low 1.76 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 1181 _reflns_shell.percent_possible_all ? _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.349 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all 0.214 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] -0.43 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][2] 0.61 _refine.aniso_B[2][3] 0.00 _refine.aniso_B[3][3] -0.18 _refine.B_iso_max ? _refine.B_iso_mean 21.135 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc 0.954 _refine.correlation_coeff_Fo_to_Fc_free 0.933 _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 5YXZ _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.70 _refine.ls_d_res_low 42.11 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 15943 _refine.ls_number_reflns_R_free 860 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 97.16 _refine.ls_percent_reflns_R_free 5.1 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.20186 _refine.ls_R_factor_R_free 0.23692 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.20011 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 5F2E _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 0.142 _refine.pdbx_overall_ESU_R_Free 0.131 _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B 2.399 _refine.overall_SU_ML 0.080 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id 1 _refine_hist.pdbx_number_atoms_protein 1339 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 62 _refine_hist.number_atoms_solvent 141 _refine_hist.number_atoms_total 1542 _refine_hist.d_res_high 1.70 _refine_hist.d_res_low 42.11 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.008 0.022 1478 ? r_bond_refined_d ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_bond_other_d ? ? 'X-RAY DIFFRACTION' ? 1.180 2.006 2016 ? r_angle_refined_deg ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_angle_other_deg ? ? 'X-RAY DIFFRACTION' ? 4.996 5.000 186 ? r_dihedral_angle_1_deg ? ? 'X-RAY DIFFRACTION' ? 36.923 24.571 70 ? r_dihedral_angle_2_deg ? ? 'X-RAY DIFFRACTION' ? 13.171 15.000 253 ? r_dihedral_angle_3_deg ? ? 'X-RAY DIFFRACTION' ? 11.733 15.000 11 ? r_dihedral_angle_4_deg ? ? 'X-RAY DIFFRACTION' ? 0.079 0.200 224 ? r_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.003 0.020 1156 ? r_gen_planes_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_gen_planes_other ? ? 'X-RAY DIFFRACTION' ? 0.190 0.200 705 ? r_nbd_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbd_other ? ? 'X-RAY DIFFRACTION' ? 0.305 0.200 1008 ? r_nbtor_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbtor_other ? ? 'X-RAY DIFFRACTION' ? 0.110 0.200 143 ? r_xyhbond_nbd_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_xyhbond_nbd_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_metal_ion_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_metal_ion_other ? ? 'X-RAY DIFFRACTION' ? 0.176 0.200 50 ? r_symmetry_vdw_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_vdw_other ? ? 'X-RAY DIFFRACTION' ? 0.080 0.200 17 ? r_symmetry_hbond_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_hbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_metal_ion_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_metal_ion_other ? ? 'X-RAY DIFFRACTION' ? 0.513 1.500 901 ? r_mcbond_it ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_mcbond_other ? ? 'X-RAY DIFFRACTION' ? 0.858 2.000 1420 ? r_mcangle_it ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_mcangle_other ? ? 'X-RAY DIFFRACTION' ? 1.188 3.000 684 ? r_scbond_it ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_scbond_other ? ? 'X-RAY DIFFRACTION' ? 1.818 4.500 587 ? r_scangle_it ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_scangle_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_long_range_B_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_long_range_B_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_rigid_bond_restr ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_sphericity_free ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_sphericity_bonded ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 1.705 _refine_ls_shell.d_res_low 1.749 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 41 _refine_ls_shell.number_reflns_R_work 861 _refine_ls_shell.percent_reflns_obs 71.82 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free 0.350 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.R_factor_R_work 0.324 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? # _struct.entry_id 5YXZ _struct.title 'Co-crystal Structure of KRAS (G12C) covalently bound with Quinazoline based inhibitor JBI484' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5YXZ _struct_keywords.text 'KRAS, G12C, TRANSFERASE' _struct_keywords.pdbx_keywords TRANSFERASE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 6 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code RASK_HUMAN _struct_ref.pdbx_db_accession P01116 _struct_ref.pdbx_db_isoform P01116-2 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC VFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLV REIRKHKEK ; _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 5YXZ _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 170 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P01116 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 169 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 169 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 5YXZ GLY A 1 ? UNP P01116 ? ? 'expression tag' 0 1 1 5YXZ CYS A 13 ? UNP P01116 GLY 12 variant 12 2 1 5YXZ SER A 52 ? UNP P01116 CYS 51 'engineered mutation' 51 3 1 5YXZ LEU A 81 ? UNP P01116 CYS 80 'engineered mutation' 80 4 1 5YXZ SER A 119 ? UNP P01116 CYS 118 'engineered mutation' 118 5 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 880 ? 1 MORE -20 ? 1 'SSA (A^2)' 8120 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 GLY A 16 ? ASN A 27 ? GLY A 15 ASN A 26 1 ? 12 HELX_P HELX_P2 AA2 SER A 66 ? GLY A 76 ? SER A 65 GLY A 75 1 ? 11 HELX_P HELX_P3 AA3 ASN A 87 ? ASP A 93 ? ASN A 86 ASP A 92 1 ? 7 HELX_P HELX_P4 AA4 ASP A 93 ? LYS A 105 ? ASP A 92 LYS A 104 1 ? 13 HELX_P HELX_P5 AA5 ASP A 127 ? GLY A 139 ? ASP A 126 GLY A 138 1 ? 13 HELX_P HELX_P6 AA6 GLY A 152 ? GLU A 169 ? GLY A 151 GLU A 168 1 ? 18 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale none ? A CYS 13 SG ? ? ? 1_555 D 94C . C14 ? ? A CYS 12 A 94C 203 1_555 ? ? ? ? ? ? ? 1.614 ? ? metalc1 metalc ? ? A SER 18 OG ? ? ? 1_555 B MG . MG ? ? A SER 17 A MG 201 1_555 ? ? ? ? ? ? ? 2.171 ? ? metalc2 metalc ? ? B MG . MG ? ? ? 1_555 C GDP . O3B ? ? A MG 201 A GDP 202 1_555 ? ? ? ? ? ? ? 2.161 ? ? metalc3 metalc ? ? B MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 201 A HOH 309 1_555 ? ? ? ? ? ? ? 2.125 ? ? metalc4 metalc ? ? B MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 201 A HOH 328 1_555 ? ? ? ? ? ? ? 2.089 ? ? metalc5 metalc ? ? B MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 201 A HOH 341 1_555 ? ? ? ? ? ? ? 2.072 ? ? metalc6 metalc ? ? B MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 201 A HOH 348 1_555 ? ? ? ? ? ? ? 2.111 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OG ? A SER 18 ? A SER 17 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 O3B ? C GDP . ? A GDP 202 ? 1_555 91.4 ? 2 OG ? A SER 18 ? A SER 17 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 O ? F HOH . ? A HOH 309 ? 1_555 88.4 ? 3 O3B ? C GDP . ? A GDP 202 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 O ? F HOH . ? A HOH 309 ? 1_555 85.6 ? 4 OG ? A SER 18 ? A SER 17 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 O ? F HOH . ? A HOH 328 ? 1_555 173.4 ? 5 O3B ? C GDP . ? A GDP 202 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 O ? F HOH . ? A HOH 328 ? 1_555 90.4 ? 6 O ? F HOH . ? A HOH 309 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 O ? F HOH . ? A HOH 328 ? 1_555 98.1 ? 7 OG ? A SER 18 ? A SER 17 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 O ? F HOH . ? A HOH 341 ? 1_555 83.0 ? 8 O3B ? C GDP . ? A GDP 202 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 O ? F HOH . ? A HOH 341 ? 1_555 91.2 ? 9 O ? F HOH . ? A HOH 309 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 O ? F HOH . ? A HOH 341 ? 1_555 170.8 ? 10 O ? F HOH . ? A HOH 328 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 O ? F HOH . ? A HOH 341 ? 1_555 90.6 ? 11 OG ? A SER 18 ? A SER 17 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 O ? F HOH . ? A HOH 348 ? 1_555 90.1 ? 12 O3B ? C GDP . ? A GDP 202 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 O ? F HOH . ? A HOH 348 ? 1_555 173.0 ? 13 O ? F HOH . ? A HOH 309 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 O ? F HOH . ? A HOH 348 ? 1_555 87.5 ? 14 O ? F HOH . ? A HOH 328 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 O ? F HOH . ? A HOH 348 ? 1_555 89.0 ? 15 O ? F HOH . ? A HOH 341 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 O ? F HOH . ? A HOH 348 ? 1_555 95.8 ? # _pdbx_modification_feature.ordinal 1 _pdbx_modification_feature.label_comp_id 94C _pdbx_modification_feature.label_asym_id D _pdbx_modification_feature.label_seq_id . _pdbx_modification_feature.label_alt_id ? _pdbx_modification_feature.modified_residue_label_comp_id CYS _pdbx_modification_feature.modified_residue_label_asym_id A _pdbx_modification_feature.modified_residue_label_seq_id 13 _pdbx_modification_feature.modified_residue_label_alt_id ? _pdbx_modification_feature.auth_comp_id 94C _pdbx_modification_feature.auth_asym_id A _pdbx_modification_feature.auth_seq_id 203 _pdbx_modification_feature.PDB_ins_code ? _pdbx_modification_feature.symmetry 1_555 _pdbx_modification_feature.modified_residue_auth_comp_id CYS _pdbx_modification_feature.modified_residue_auth_asym_id A _pdbx_modification_feature.modified_residue_auth_seq_id 12 _pdbx_modification_feature.modified_residue_PDB_ins_code ? _pdbx_modification_feature.modified_residue_symmetry 1_555 _pdbx_modification_feature.comp_id_linking_atom C14 _pdbx_modification_feature.modified_residue_id_linking_atom SG _pdbx_modification_feature.modified_residue_id CYS _pdbx_modification_feature.ref_pcm_id 1 _pdbx_modification_feature.ref_comp_id 94C _pdbx_modification_feature.type None _pdbx_modification_feature.category 'Covalent chemical modification' # _struct_sheet.id AA1 _struct_sheet.type ? _struct_sheet.number_strands 6 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? parallel AA1 3 4 ? parallel AA1 4 5 ? parallel AA1 5 6 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 ASP A 39 ? ILE A 47 ? ASP A 38 ILE A 46 AA1 2 GLU A 50 ? ASP A 58 ? GLU A 49 ASP A 57 AA1 3 GLU A 4 ? GLY A 11 ? GLU A 3 GLY A 10 AA1 4 GLY A 78 ? ALA A 84 ? GLY A 77 ALA A 83 AA1 5 MET A 112 ? ASN A 117 ? MET A 111 ASN A 116 AA1 6 PHE A 142 ? GLU A 144 ? PHE A 141 GLU A 143 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N LYS A 43 ? N LYS A 42 O LEU A 54 ? O LEU A 53 AA1 2 3 O ASP A 55 ? O ASP A 54 N LEU A 7 ? N LEU A 6 AA1 3 4 N VAL A 10 ? N VAL A 9 O LEU A 80 ? O LEU A 79 AA1 4 5 N PHE A 83 ? N PHE A 82 O ASN A 117 ? O ASN A 116 AA1 5 6 N LEU A 114 ? N LEU A 113 O ILE A 143 ? O ILE A 142 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A MG 201 ? 6 'binding site for residue MG A 201' AC2 Software A GDP 202 ? 25 'binding site for residue GDP A 202' AC3 Software A 94C 203 ? 17 'binding site for residue 94C A 203' AC4 Software A EDO 204 ? 7 'binding site for residue EDO A 204' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 SER A 18 ? SER A 17 . ? 1_555 ? 2 AC1 6 GDP C . ? GDP A 202 . ? 1_555 ? 3 AC1 6 HOH F . ? HOH A 309 . ? 1_555 ? 4 AC1 6 HOH F . ? HOH A 328 . ? 1_555 ? 5 AC1 6 HOH F . ? HOH A 341 . ? 1_555 ? 6 AC1 6 HOH F . ? HOH A 348 . ? 1_555 ? 7 AC2 25 GLY A 14 ? GLY A 13 . ? 1_555 ? 8 AC2 25 VAL A 15 ? VAL A 14 . ? 1_555 ? 9 AC2 25 GLY A 16 ? GLY A 15 . ? 1_555 ? 10 AC2 25 LYS A 17 ? LYS A 16 . ? 1_555 ? 11 AC2 25 SER A 18 ? SER A 17 . ? 1_555 ? 12 AC2 25 ALA A 19 ? ALA A 18 . ? 1_555 ? 13 AC2 25 PHE A 29 ? PHE A 28 . ? 1_555 ? 14 AC2 25 ASP A 31 ? ASP A 30 . ? 1_555 ? 15 AC2 25 ASN A 117 ? ASN A 116 . ? 1_555 ? 16 AC2 25 LYS A 118 ? LYS A 117 . ? 1_555 ? 17 AC2 25 ASP A 120 ? ASP A 119 . ? 1_555 ? 18 AC2 25 LEU A 121 ? LEU A 120 . ? 1_555 ? 19 AC2 25 SER A 146 ? SER A 145 . ? 1_555 ? 20 AC2 25 ALA A 147 ? ALA A 146 . ? 1_555 ? 21 AC2 25 LYS A 148 ? LYS A 147 . ? 1_555 ? 22 AC2 25 MG B . ? MG A 201 . ? 1_555 ? 23 AC2 25 94C D . ? 94C A 203 . ? 1_555 ? 24 AC2 25 HOH F . ? HOH A 309 . ? 1_555 ? 25 AC2 25 HOH F . ? HOH A 328 . ? 1_555 ? 26 AC2 25 HOH F . ? HOH A 333 . ? 1_555 ? 27 AC2 25 HOH F . ? HOH A 338 . ? 1_455 ? 28 AC2 25 HOH F . ? HOH A 341 . ? 1_555 ? 29 AC2 25 HOH F . ? HOH A 373 . ? 1_555 ? 30 AC2 25 HOH F . ? HOH A 389 . ? 1_555 ? 31 AC2 25 HOH F . ? HOH A 428 . ? 1_555 ? 32 AC3 17 VAL A 10 ? VAL A 9 . ? 1_555 ? 33 AC3 17 GLY A 11 ? GLY A 10 . ? 1_555 ? 34 AC3 17 CYS A 13 ? CYS A 12 . ? 1_555 ? 35 AC3 17 LYS A 17 ? LYS A 16 . ? 1_555 ? 36 AC3 17 PRO A 35 ? PRO A 34 . ? 1_555 ? 37 AC3 17 THR A 59 ? THR A 58 . ? 1_555 ? 38 AC3 17 ALA A 60 ? ALA A 59 . ? 1_555 ? 39 AC3 17 GLY A 61 ? GLY A 60 . ? 1_555 ? 40 AC3 17 GLU A 63 ? GLU A 62 . ? 1_555 ? 41 AC3 17 ARG A 69 ? ARG A 68 . ? 1_555 ? 42 AC3 17 MET A 73 ? MET A 72 . ? 1_555 ? 43 AC3 17 HIS A 96 ? HIS A 95 . ? 1_555 ? 44 AC3 17 TYR A 97 ? TYR A 96 . ? 1_555 ? 45 AC3 17 GLN A 100 ? GLN A 99 . ? 1_555 ? 46 AC3 17 ASP A 106 ? ASP A 105 . ? 4_455 ? 47 AC3 17 GDP C . ? GDP A 202 . ? 1_555 ? 48 AC3 17 HOH F . ? HOH A 394 . ? 1_555 ? 49 AC4 7 CYS A 13 ? CYS A 12 . ? 1_555 ? 50 AC4 7 GLY A 14 ? GLY A 13 . ? 1_555 ? 51 AC4 7 VAL A 15 ? VAL A 14 . ? 1_555 ? 52 AC4 7 ALA A 84 ? ALA A 83 . ? 1_555 ? 53 AC4 7 ASN A 87 ? ASN A 86 . ? 1_555 ? 54 AC4 7 LYS A 170 ? LYS A 169 . ? 1_455 ? 55 AC4 7 HOH F . ? HOH A 327 . ? 1_555 ? # _pdbx_entry_details.entry_id 5YXZ _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLU A 31 ? ? -140.11 53.22 2 1 ASP A 33 ? ? -36.54 114.46 3 1 ALA A 59 ? ? -150.84 -27.69 4 1 TYR A 64 ? ? -122.18 -57.21 5 1 LYS A 117 ? ? 71.05 38.83 6 1 ARG A 149 ? ? 81.06 -1.21 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 94C C25 C Y N 1 94C C26 C Y N 2 94C C24 C Y N 3 94C C27 C Y N 4 94C C19 C Y N 5 94C C5 C Y N 6 94C C18 C Y N 7 94C C23 C Y N 8 94C C22 C Y N 9 94C C3 C Y N 10 94C C28 C Y N 11 94C C2 C Y N 12 94C C20 C Y N 13 94C C7 C Y N 14 94C C14 C N N 15 94C C13 C N N 16 94C C12 C N N 17 94C C9 C N N 18 94C C17 C N N 19 94C C10 C N N 20 94C C16 C N N 21 94C N4 N Y N 22 94C N6 N Y N 23 94C N8 N N N 24 94C N11 N N N 25 94C O15 O N N 26 94C F29 F N N 27 94C F1 F N N 28 94C CL CL N N 29 94C H1 H N N 30 94C H2 H N N 31 94C H3 H N N 32 94C H4 H N N 33 94C H5 H N N 34 94C H6 H N N 35 94C H7 H N N 36 94C H8 H N N 37 94C H9 H N N 38 94C H10 H N N 39 94C H11 H N N 40 94C H12 H N N 41 94C H13 H N N 42 94C H14 H N N 43 94C H15 H N N 44 94C H16 H N N 45 94C H17 H N N 46 94C H18 H N N 47 94C H19 H N N 48 ALA N N N N 49 ALA CA C N S 50 ALA C C N N 51 ALA O O N N 52 ALA CB C N N 53 ALA OXT O N N 54 ALA H H N N 55 ALA H2 H N N 56 ALA HA H N N 57 ALA HB1 H N N 58 ALA HB2 H N N 59 ALA HB3 H N N 60 ALA HXT H N N 61 ARG N N N N 62 ARG CA C N S 63 ARG C C N N 64 ARG O O N N 65 ARG CB C N N 66 ARG CG C N N 67 ARG CD C N N 68 ARG NE N N N 69 ARG CZ C N N 70 ARG NH1 N N N 71 ARG NH2 N N N 72 ARG OXT O N N 73 ARG H H N N 74 ARG H2 H N N 75 ARG HA H N N 76 ARG HB2 H N N 77 ARG HB3 H N N 78 ARG HG2 H N N 79 ARG HG3 H N N 80 ARG HD2 H N N 81 ARG HD3 H N N 82 ARG HE H N N 83 ARG HH11 H N N 84 ARG HH12 H N N 85 ARG HH21 H N N 86 ARG HH22 H N N 87 ARG HXT H N N 88 ASN N N N N 89 ASN CA C N S 90 ASN C C N N 91 ASN O O N N 92 ASN CB C N N 93 ASN CG C N N 94 ASN OD1 O N N 95 ASN ND2 N N N 96 ASN OXT O N N 97 ASN H H N N 98 ASN H2 H N N 99 ASN HA H N N 100 ASN HB2 H N N 101 ASN HB3 H N N 102 ASN HD21 H N N 103 ASN HD22 H N N 104 ASN HXT H N N 105 ASP N N N N 106 ASP CA C N S 107 ASP C C N N 108 ASP O O N N 109 ASP CB C N N 110 ASP CG C N N 111 ASP OD1 O N N 112 ASP OD2 O N N 113 ASP OXT O N N 114 ASP H H N N 115 ASP H2 H N N 116 ASP HA H N N 117 ASP HB2 H N N 118 ASP HB3 H N N 119 ASP HD2 H N N 120 ASP HXT H N N 121 CYS N N N N 122 CYS CA C N R 123 CYS C C N N 124 CYS O O N N 125 CYS CB C N N 126 CYS SG S N N 127 CYS OXT O N N 128 CYS H H N N 129 CYS H2 H N N 130 CYS HA H N N 131 CYS HB2 H N N 132 CYS HB3 H N N 133 CYS HG H N N 134 CYS HXT H N N 135 EDO C1 C N N 136 EDO O1 O N N 137 EDO C2 C N N 138 EDO O2 O N N 139 EDO H11 H N N 140 EDO H12 H N N 141 EDO HO1 H N N 142 EDO H21 H N N 143 EDO H22 H N N 144 EDO HO2 H N N 145 GDP PB P N N 146 GDP O1B O N N 147 GDP O2B O N N 148 GDP O3B O N N 149 GDP O3A O N N 150 GDP PA P N N 151 GDP O1A O N N 152 GDP O2A O N N 153 GDP "O5'" O N N 154 GDP "C5'" C N N 155 GDP "C4'" C N R 156 GDP "O4'" O N N 157 GDP "C3'" C N S 158 GDP "O3'" O N N 159 GDP "C2'" C N R 160 GDP "O2'" O N N 161 GDP "C1'" C N R 162 GDP N9 N Y N 163 GDP C8 C Y N 164 GDP N7 N Y N 165 GDP C5 C Y N 166 GDP C6 C N N 167 GDP O6 O N N 168 GDP N1 N N N 169 GDP C2 C N N 170 GDP N2 N N N 171 GDP N3 N N N 172 GDP C4 C Y N 173 GDP HOB2 H N N 174 GDP HOB3 H N N 175 GDP HOA2 H N N 176 GDP "H5'" H N N 177 GDP "H5''" H N N 178 GDP "H4'" H N N 179 GDP "H3'" H N N 180 GDP "HO3'" H N N 181 GDP "H2'" H N N 182 GDP "HO2'" H N N 183 GDP "H1'" H N N 184 GDP H8 H N N 185 GDP HN1 H N N 186 GDP HN21 H N N 187 GDP HN22 H N N 188 GLN N N N N 189 GLN CA C N S 190 GLN C C N N 191 GLN O O N N 192 GLN CB C N N 193 GLN CG C N N 194 GLN CD C N N 195 GLN OE1 O N N 196 GLN NE2 N N N 197 GLN OXT O N N 198 GLN H H N N 199 GLN H2 H N N 200 GLN HA H N N 201 GLN HB2 H N N 202 GLN HB3 H N N 203 GLN HG2 H N N 204 GLN HG3 H N N 205 GLN HE21 H N N 206 GLN HE22 H N N 207 GLN HXT H N N 208 GLU N N N N 209 GLU CA C N S 210 GLU C C N N 211 GLU O O N N 212 GLU CB C N N 213 GLU CG C N N 214 GLU CD C N N 215 GLU OE1 O N N 216 GLU OE2 O N N 217 GLU OXT O N N 218 GLU H H N N 219 GLU H2 H N N 220 GLU HA H N N 221 GLU HB2 H N N 222 GLU HB3 H N N 223 GLU HG2 H N N 224 GLU HG3 H N N 225 GLU HE2 H N N 226 GLU HXT H N N 227 GLY N N N N 228 GLY CA C N N 229 GLY C C N N 230 GLY O O N N 231 GLY OXT O N N 232 GLY H H N N 233 GLY H2 H N N 234 GLY HA2 H N N 235 GLY HA3 H N N 236 GLY HXT H N N 237 HIS N N N N 238 HIS CA C N S 239 HIS C C N N 240 HIS O O N N 241 HIS CB C N N 242 HIS CG C Y N 243 HIS ND1 N Y N 244 HIS CD2 C Y N 245 HIS CE1 C Y N 246 HIS NE2 N Y N 247 HIS OXT O N N 248 HIS H H N N 249 HIS H2 H N N 250 HIS HA H N N 251 HIS HB2 H N N 252 HIS HB3 H N N 253 HIS HD1 H N N 254 HIS HD2 H N N 255 HIS HE1 H N N 256 HIS HE2 H N N 257 HIS HXT H N N 258 HOH O O N N 259 HOH H1 H N N 260 HOH H2 H N N 261 ILE N N N N 262 ILE CA C N S 263 ILE C C N N 264 ILE O O N N 265 ILE CB C N S 266 ILE CG1 C N N 267 ILE CG2 C N N 268 ILE CD1 C N N 269 ILE OXT O N N 270 ILE H H N N 271 ILE H2 H N N 272 ILE HA H N N 273 ILE HB H N N 274 ILE HG12 H N N 275 ILE HG13 H N N 276 ILE HG21 H N N 277 ILE HG22 H N N 278 ILE HG23 H N N 279 ILE HD11 H N N 280 ILE HD12 H N N 281 ILE HD13 H N N 282 ILE HXT H N N 283 LEU N N N N 284 LEU CA C N S 285 LEU C C N N 286 LEU O O N N 287 LEU CB C N N 288 LEU CG C N N 289 LEU CD1 C N N 290 LEU CD2 C N N 291 LEU OXT O N N 292 LEU H H N N 293 LEU H2 H N N 294 LEU HA H N N 295 LEU HB2 H N N 296 LEU HB3 H N N 297 LEU HG H N N 298 LEU HD11 H N N 299 LEU HD12 H N N 300 LEU HD13 H N N 301 LEU HD21 H N N 302 LEU HD22 H N N 303 LEU HD23 H N N 304 LEU HXT H N N 305 LYS N N N N 306 LYS CA C N S 307 LYS C C N N 308 LYS O O N N 309 LYS CB C N N 310 LYS CG C N N 311 LYS CD C N N 312 LYS CE C N N 313 LYS NZ N N N 314 LYS OXT O N N 315 LYS H H N N 316 LYS H2 H N N 317 LYS HA H N N 318 LYS HB2 H N N 319 LYS HB3 H N N 320 LYS HG2 H N N 321 LYS HG3 H N N 322 LYS HD2 H N N 323 LYS HD3 H N N 324 LYS HE2 H N N 325 LYS HE3 H N N 326 LYS HZ1 H N N 327 LYS HZ2 H N N 328 LYS HZ3 H N N 329 LYS HXT H N N 330 MET N N N N 331 MET CA C N S 332 MET C C N N 333 MET O O N N 334 MET CB C N N 335 MET CG C N N 336 MET SD S N N 337 MET CE C N N 338 MET OXT O N N 339 MET H H N N 340 MET H2 H N N 341 MET HA H N N 342 MET HB2 H N N 343 MET HB3 H N N 344 MET HG2 H N N 345 MET HG3 H N N 346 MET HE1 H N N 347 MET HE2 H N N 348 MET HE3 H N N 349 MET HXT H N N 350 MG MG MG N N 351 PHE N N N N 352 PHE CA C N S 353 PHE C C N N 354 PHE O O N N 355 PHE CB C N N 356 PHE CG C Y N 357 PHE CD1 C Y N 358 PHE CD2 C Y N 359 PHE CE1 C Y N 360 PHE CE2 C Y N 361 PHE CZ C Y N 362 PHE OXT O N N 363 PHE H H N N 364 PHE H2 H N N 365 PHE HA H N N 366 PHE HB2 H N N 367 PHE HB3 H N N 368 PHE HD1 H N N 369 PHE HD2 H N N 370 PHE HE1 H N N 371 PHE HE2 H N N 372 PHE HZ H N N 373 PHE HXT H N N 374 PRO N N N N 375 PRO CA C N S 376 PRO C C N N 377 PRO O O N N 378 PRO CB C N N 379 PRO CG C N N 380 PRO CD C N N 381 PRO OXT O N N 382 PRO H H N N 383 PRO HA H N N 384 PRO HB2 H N N 385 PRO HB3 H N N 386 PRO HG2 H N N 387 PRO HG3 H N N 388 PRO HD2 H N N 389 PRO HD3 H N N 390 PRO HXT H N N 391 SER N N N N 392 SER CA C N S 393 SER C C N N 394 SER O O N N 395 SER CB C N N 396 SER OG O N N 397 SER OXT O N N 398 SER H H N N 399 SER H2 H N N 400 SER HA H N N 401 SER HB2 H N N 402 SER HB3 H N N 403 SER HG H N N 404 SER HXT H N N 405 THR N N N N 406 THR CA C N S 407 THR C C N N 408 THR O O N N 409 THR CB C N R 410 THR OG1 O N N 411 THR CG2 C N N 412 THR OXT O N N 413 THR H H N N 414 THR H2 H N N 415 THR HA H N N 416 THR HB H N N 417 THR HG1 H N N 418 THR HG21 H N N 419 THR HG22 H N N 420 THR HG23 H N N 421 THR HXT H N N 422 TYR N N N N 423 TYR CA C N S 424 TYR C C N N 425 TYR O O N N 426 TYR CB C N N 427 TYR CG C Y N 428 TYR CD1 C Y N 429 TYR CD2 C Y N 430 TYR CE1 C Y N 431 TYR CE2 C Y N 432 TYR CZ C Y N 433 TYR OH O N N 434 TYR OXT O N N 435 TYR H H N N 436 TYR H2 H N N 437 TYR HA H N N 438 TYR HB2 H N N 439 TYR HB3 H N N 440 TYR HD1 H N N 441 TYR HD2 H N N 442 TYR HE1 H N N 443 TYR HE2 H N N 444 TYR HH H N N 445 TYR HXT H N N 446 VAL N N N N 447 VAL CA C N S 448 VAL C C N N 449 VAL O O N N 450 VAL CB C N N 451 VAL CG1 C N N 452 VAL CG2 C N N 453 VAL OXT O N N 454 VAL H H N N 455 VAL H2 H N N 456 VAL HA H N N 457 VAL HB H N N 458 VAL HG11 H N N 459 VAL HG12 H N N 460 VAL HG13 H N N 461 VAL HG21 H N N 462 VAL HG22 H N N 463 VAL HG23 H N N 464 VAL HXT H N N 465 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 94C N4 C5 doub Y N 1 94C N4 C3 sing Y N 2 94C F1 C2 sing N N 3 94C C5 N6 sing Y N 4 94C C3 C2 doub Y N 5 94C C3 C18 sing Y N 6 94C C2 C22 sing Y N 7 94C N6 C7 doub Y N 8 94C F29 C28 sing N N 9 94C C27 C28 doub Y N 10 94C C27 C26 sing Y N 11 94C C28 C23 sing Y N 12 94C C26 C25 doub Y N 13 94C C23 C22 sing N N 14 94C C23 C24 doub Y N 15 94C C25 C24 sing Y N 16 94C C22 C20 doub Y N 17 94C C7 C18 sing Y N 18 94C C7 N8 sing N N 19 94C C18 C19 doub Y N 20 94C C17 N8 sing N N 21 94C C17 C16 sing N N 22 94C C20 C19 sing Y N 23 94C C20 CL sing N N 24 94C N8 C9 sing N N 25 94C C9 C10 sing N N 26 94C C10 N11 sing N N 27 94C C16 N11 sing N N 28 94C N11 C12 sing N N 29 94C C12 C13 sing N N 30 94C C12 O15 doub N N 31 94C C13 C14 sing N N 32 94C C25 H1 sing N N 33 94C C26 H2 sing N N 34 94C C24 H3 sing N N 35 94C C27 H4 sing N N 36 94C C19 H5 sing N N 37 94C C5 H6 sing N N 38 94C C14 H7 sing N N 39 94C C14 H8 sing N N 40 94C C14 H9 sing N N 41 94C C13 H10 sing N N 42 94C C13 H11 sing N N 43 94C C9 H12 sing N N 44 94C C9 H13 sing N N 45 94C C17 H14 sing N N 46 94C C17 H15 sing N N 47 94C C10 H16 sing N N 48 94C C10 H17 sing N N 49 94C C16 H18 sing N N 50 94C C16 H19 sing N N 51 ALA N CA sing N N 52 ALA N H sing N N 53 ALA N H2 sing N N 54 ALA CA C sing N N 55 ALA CA CB sing N N 56 ALA CA HA sing N N 57 ALA C O doub N N 58 ALA C OXT sing N N 59 ALA CB HB1 sing N N 60 ALA CB HB2 sing N N 61 ALA CB HB3 sing N N 62 ALA OXT HXT sing N N 63 ARG N CA sing N N 64 ARG N H sing N N 65 ARG N H2 sing N N 66 ARG CA C sing N N 67 ARG CA CB sing N N 68 ARG CA HA sing N N 69 ARG C O doub N N 70 ARG C OXT sing N N 71 ARG CB CG sing N N 72 ARG CB HB2 sing N N 73 ARG CB HB3 sing N N 74 ARG CG CD sing N N 75 ARG CG HG2 sing N N 76 ARG CG HG3 sing N N 77 ARG CD NE sing N N 78 ARG CD HD2 sing N N 79 ARG CD HD3 sing N N 80 ARG NE CZ sing N N 81 ARG NE HE sing N N 82 ARG CZ NH1 sing N N 83 ARG CZ NH2 doub N N 84 ARG NH1 HH11 sing N N 85 ARG NH1 HH12 sing N N 86 ARG NH2 HH21 sing N N 87 ARG NH2 HH22 sing N N 88 ARG OXT HXT sing N N 89 ASN N CA sing N N 90 ASN N H sing N N 91 ASN N H2 sing N N 92 ASN CA C sing N N 93 ASN CA CB sing N N 94 ASN CA HA sing N N 95 ASN C O doub N N 96 ASN C OXT sing N N 97 ASN CB CG sing N N 98 ASN CB HB2 sing N N 99 ASN CB HB3 sing N N 100 ASN CG OD1 doub N N 101 ASN CG ND2 sing N N 102 ASN ND2 HD21 sing N N 103 ASN ND2 HD22 sing N N 104 ASN OXT HXT sing N N 105 ASP N CA sing N N 106 ASP N H sing N N 107 ASP N H2 sing N N 108 ASP CA C sing N N 109 ASP CA CB sing N N 110 ASP CA HA sing N N 111 ASP C O doub N N 112 ASP C OXT sing N N 113 ASP CB CG sing N N 114 ASP CB HB2 sing N N 115 ASP CB HB3 sing N N 116 ASP CG OD1 doub N N 117 ASP CG OD2 sing N N 118 ASP OD2 HD2 sing N N 119 ASP OXT HXT sing N N 120 CYS N CA sing N N 121 CYS N H sing N N 122 CYS N H2 sing N N 123 CYS CA C sing N N 124 CYS CA CB sing N N 125 CYS CA HA sing N N 126 CYS C O doub N N 127 CYS C OXT sing N N 128 CYS CB SG sing N N 129 CYS CB HB2 sing N N 130 CYS CB HB3 sing N N 131 CYS SG HG sing N N 132 CYS OXT HXT sing N N 133 EDO C1 O1 sing N N 134 EDO C1 C2 sing N N 135 EDO C1 H11 sing N N 136 EDO C1 H12 sing N N 137 EDO O1 HO1 sing N N 138 EDO C2 O2 sing N N 139 EDO C2 H21 sing N N 140 EDO C2 H22 sing N N 141 EDO O2 HO2 sing N N 142 GDP PB O1B doub N N 143 GDP PB O2B sing N N 144 GDP PB O3B sing N N 145 GDP PB O3A sing N N 146 GDP O2B HOB2 sing N N 147 GDP O3B HOB3 sing N N 148 GDP O3A PA sing N N 149 GDP PA O1A doub N N 150 GDP PA O2A sing N N 151 GDP PA "O5'" sing N N 152 GDP O2A HOA2 sing N N 153 GDP "O5'" "C5'" sing N N 154 GDP "C5'" "C4'" sing N N 155 GDP "C5'" "H5'" sing N N 156 GDP "C5'" "H5''" sing N N 157 GDP "C4'" "O4'" sing N N 158 GDP "C4'" "C3'" sing N N 159 GDP "C4'" "H4'" sing N N 160 GDP "O4'" "C1'" sing N N 161 GDP "C3'" "O3'" sing N N 162 GDP "C3'" "C2'" sing N N 163 GDP "C3'" "H3'" sing N N 164 GDP "O3'" "HO3'" sing N N 165 GDP "C2'" "O2'" sing N N 166 GDP "C2'" "C1'" sing N N 167 GDP "C2'" "H2'" sing N N 168 GDP "O2'" "HO2'" sing N N 169 GDP "C1'" N9 sing N N 170 GDP "C1'" "H1'" sing N N 171 GDP N9 C8 sing Y N 172 GDP N9 C4 sing Y N 173 GDP C8 N7 doub Y N 174 GDP C8 H8 sing N N 175 GDP N7 C5 sing Y N 176 GDP C5 C6 sing N N 177 GDP C5 C4 doub Y N 178 GDP C6 O6 doub N N 179 GDP C6 N1 sing N N 180 GDP N1 C2 sing N N 181 GDP N1 HN1 sing N N 182 GDP C2 N2 sing N N 183 GDP C2 N3 doub N N 184 GDP N2 HN21 sing N N 185 GDP N2 HN22 sing N N 186 GDP N3 C4 sing N N 187 GLN N CA sing N N 188 GLN N H sing N N 189 GLN N H2 sing N N 190 GLN CA C sing N N 191 GLN CA CB sing N N 192 GLN CA HA sing N N 193 GLN C O doub N N 194 GLN C OXT sing N N 195 GLN CB CG sing N N 196 GLN CB HB2 sing N N 197 GLN CB HB3 sing N N 198 GLN CG CD sing N N 199 GLN CG HG2 sing N N 200 GLN CG HG3 sing N N 201 GLN CD OE1 doub N N 202 GLN CD NE2 sing N N 203 GLN NE2 HE21 sing N N 204 GLN NE2 HE22 sing N N 205 GLN OXT HXT sing N N 206 GLU N CA sing N N 207 GLU N H sing N N 208 GLU N H2 sing N N 209 GLU CA C sing N N 210 GLU CA CB sing N N 211 GLU CA HA sing N N 212 GLU C O doub N N 213 GLU C OXT sing N N 214 GLU CB CG sing N N 215 GLU CB HB2 sing N N 216 GLU CB HB3 sing N N 217 GLU CG CD sing N N 218 GLU CG HG2 sing N N 219 GLU CG HG3 sing N N 220 GLU CD OE1 doub N N 221 GLU CD OE2 sing N N 222 GLU OE2 HE2 sing N N 223 GLU OXT HXT sing N N 224 GLY N CA sing N N 225 GLY N H sing N N 226 GLY N H2 sing N N 227 GLY CA C sing N N 228 GLY CA HA2 sing N N 229 GLY CA HA3 sing N N 230 GLY C O doub N N 231 GLY C OXT sing N N 232 GLY OXT HXT sing N N 233 HIS N CA sing N N 234 HIS N H sing N N 235 HIS N H2 sing N N 236 HIS CA C sing N N 237 HIS CA CB sing N N 238 HIS CA HA sing N N 239 HIS C O doub N N 240 HIS C OXT sing N N 241 HIS CB CG sing N N 242 HIS CB HB2 sing N N 243 HIS CB HB3 sing N N 244 HIS CG ND1 sing Y N 245 HIS CG CD2 doub Y N 246 HIS ND1 CE1 doub Y N 247 HIS ND1 HD1 sing N N 248 HIS CD2 NE2 sing Y N 249 HIS CD2 HD2 sing N N 250 HIS CE1 NE2 sing Y N 251 HIS CE1 HE1 sing N N 252 HIS NE2 HE2 sing N N 253 HIS OXT HXT sing N N 254 HOH O H1 sing N N 255 HOH O H2 sing N N 256 ILE N CA sing N N 257 ILE N H sing N N 258 ILE N H2 sing N N 259 ILE CA C sing N N 260 ILE CA CB sing N N 261 ILE CA HA sing N N 262 ILE C O doub N N 263 ILE C OXT sing N N 264 ILE CB CG1 sing N N 265 ILE CB CG2 sing N N 266 ILE CB HB sing N N 267 ILE CG1 CD1 sing N N 268 ILE CG1 HG12 sing N N 269 ILE CG1 HG13 sing N N 270 ILE CG2 HG21 sing N N 271 ILE CG2 HG22 sing N N 272 ILE CG2 HG23 sing N N 273 ILE CD1 HD11 sing N N 274 ILE CD1 HD12 sing N N 275 ILE CD1 HD13 sing N N 276 ILE OXT HXT sing N N 277 LEU N CA sing N N 278 LEU N H sing N N 279 LEU N H2 sing N N 280 LEU CA C sing N N 281 LEU CA CB sing N N 282 LEU CA HA sing N N 283 LEU C O doub N N 284 LEU C OXT sing N N 285 LEU CB CG sing N N 286 LEU CB HB2 sing N N 287 LEU CB HB3 sing N N 288 LEU CG CD1 sing N N 289 LEU CG CD2 sing N N 290 LEU CG HG sing N N 291 LEU CD1 HD11 sing N N 292 LEU CD1 HD12 sing N N 293 LEU CD1 HD13 sing N N 294 LEU CD2 HD21 sing N N 295 LEU CD2 HD22 sing N N 296 LEU CD2 HD23 sing N N 297 LEU OXT HXT sing N N 298 LYS N CA sing N N 299 LYS N H sing N N 300 LYS N H2 sing N N 301 LYS CA C sing N N 302 LYS CA CB sing N N 303 LYS CA HA sing N N 304 LYS C O doub N N 305 LYS C OXT sing N N 306 LYS CB CG sing N N 307 LYS CB HB2 sing N N 308 LYS CB HB3 sing N N 309 LYS CG CD sing N N 310 LYS CG HG2 sing N N 311 LYS CG HG3 sing N N 312 LYS CD CE sing N N 313 LYS CD HD2 sing N N 314 LYS CD HD3 sing N N 315 LYS CE NZ sing N N 316 LYS CE HE2 sing N N 317 LYS CE HE3 sing N N 318 LYS NZ HZ1 sing N N 319 LYS NZ HZ2 sing N N 320 LYS NZ HZ3 sing N N 321 LYS OXT HXT sing N N 322 MET N CA sing N N 323 MET N H sing N N 324 MET N H2 sing N N 325 MET CA C sing N N 326 MET CA CB sing N N 327 MET CA HA sing N N 328 MET C O doub N N 329 MET C OXT sing N N 330 MET CB CG sing N N 331 MET CB HB2 sing N N 332 MET CB HB3 sing N N 333 MET CG SD sing N N 334 MET CG HG2 sing N N 335 MET CG HG3 sing N N 336 MET SD CE sing N N 337 MET CE HE1 sing N N 338 MET CE HE2 sing N N 339 MET CE HE3 sing N N 340 MET OXT HXT sing N N 341 PHE N CA sing N N 342 PHE N H sing N N 343 PHE N H2 sing N N 344 PHE CA C sing N N 345 PHE CA CB sing N N 346 PHE CA HA sing N N 347 PHE C O doub N N 348 PHE C OXT sing N N 349 PHE CB CG sing N N 350 PHE CB HB2 sing N N 351 PHE CB HB3 sing N N 352 PHE CG CD1 doub Y N 353 PHE CG CD2 sing Y N 354 PHE CD1 CE1 sing Y N 355 PHE CD1 HD1 sing N N 356 PHE CD2 CE2 doub Y N 357 PHE CD2 HD2 sing N N 358 PHE CE1 CZ doub Y N 359 PHE CE1 HE1 sing N N 360 PHE CE2 CZ sing Y N 361 PHE CE2 HE2 sing N N 362 PHE CZ HZ sing N N 363 PHE OXT HXT sing N N 364 PRO N CA sing N N 365 PRO N CD sing N N 366 PRO N H sing N N 367 PRO CA C sing N N 368 PRO CA CB sing N N 369 PRO CA HA sing N N 370 PRO C O doub N N 371 PRO C OXT sing N N 372 PRO CB CG sing N N 373 PRO CB HB2 sing N N 374 PRO CB HB3 sing N N 375 PRO CG CD sing N N 376 PRO CG HG2 sing N N 377 PRO CG HG3 sing N N 378 PRO CD HD2 sing N N 379 PRO CD HD3 sing N N 380 PRO OXT HXT sing N N 381 SER N CA sing N N 382 SER N H sing N N 383 SER N H2 sing N N 384 SER CA C sing N N 385 SER CA CB sing N N 386 SER CA HA sing N N 387 SER C O doub N N 388 SER C OXT sing N N 389 SER CB OG sing N N 390 SER CB HB2 sing N N 391 SER CB HB3 sing N N 392 SER OG HG sing N N 393 SER OXT HXT sing N N 394 THR N CA sing N N 395 THR N H sing N N 396 THR N H2 sing N N 397 THR CA C sing N N 398 THR CA CB sing N N 399 THR CA HA sing N N 400 THR C O doub N N 401 THR C OXT sing N N 402 THR CB OG1 sing N N 403 THR CB CG2 sing N N 404 THR CB HB sing N N 405 THR OG1 HG1 sing N N 406 THR CG2 HG21 sing N N 407 THR CG2 HG22 sing N N 408 THR CG2 HG23 sing N N 409 THR OXT HXT sing N N 410 TYR N CA sing N N 411 TYR N H sing N N 412 TYR N H2 sing N N 413 TYR CA C sing N N 414 TYR CA CB sing N N 415 TYR CA HA sing N N 416 TYR C O doub N N 417 TYR C OXT sing N N 418 TYR CB CG sing N N 419 TYR CB HB2 sing N N 420 TYR CB HB3 sing N N 421 TYR CG CD1 doub Y N 422 TYR CG CD2 sing Y N 423 TYR CD1 CE1 sing Y N 424 TYR CD1 HD1 sing N N 425 TYR CD2 CE2 doub Y N 426 TYR CD2 HD2 sing N N 427 TYR CE1 CZ doub Y N 428 TYR CE1 HE1 sing N N 429 TYR CE2 CZ sing Y N 430 TYR CE2 HE2 sing N N 431 TYR CZ OH sing N N 432 TYR OH HH sing N N 433 TYR OXT HXT sing N N 434 VAL N CA sing N N 435 VAL N H sing N N 436 VAL N H2 sing N N 437 VAL CA C sing N N 438 VAL CA CB sing N N 439 VAL CA HA sing N N 440 VAL C O doub N N 441 VAL C OXT sing N N 442 VAL CB CG1 sing N N 443 VAL CB CG2 sing N N 444 VAL CB HB sing N N 445 VAL CG1 HG11 sing N N 446 VAL CG1 HG12 sing N N 447 VAL CG1 HG13 sing N N 448 VAL CG2 HG21 sing N N 449 VAL CG2 HG22 sing N N 450 VAL CG2 HG23 sing N N 451 VAL OXT HXT sing N N 452 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 5F2E _pdbx_initial_refinement_model.details ? # _atom_sites.entry_id 5YXZ _atom_sites.fract_transf_matrix[1][1] 0.024036 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.018836 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.014471 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CL F MG N O P S # loop_