HEADER METAL BINDING PROTEIN 07-DEC-17 5YY2 TITLE CRYSTAL STRUCTURE OF ASQI WITH ZN COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN ASQI; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CYCLOPENASE; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: EMERICELLA NIDULANS (STRAIN FGSC A4 / ATCC SOURCE 3 38163 / CBS 112.46 / NRRL 194 / M139); SOURCE 4 ORGANISM_COMMON: ASPERGILLUS NIDULANS; SOURCE 5 ORGANISM_TAXID: 227321; SOURCE 6 STRAIN: FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139; SOURCE 7 GENE: ASQI, AN9228; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HEMOCYANIN LIKE PROTEIN, ASPOQUINOLONE BIOSYNTHESIS, SECONDARY KEYWDS 2 METABOLISM, METAL BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR K.HARA,H.HASHIMOTO,S.KISHIMOTO,K.WATANABE REVDAT 2 27-MAR-24 5YY2 1 REMARK REVDAT 1 01-AUG-18 5YY2 0 JRNL AUTH S.KISHIMOTO,K.HARA,H.HASHIMOTO,Y.HIRAYAMA,P.A.CHAMPAGNE, JRNL AUTH 2 K.N.HOUK,Y.TANG,K.WATANABE JRNL TITL ENZYMATIC ONE-STEP RING CONTRACTION FOR QUINOLONE JRNL TITL 2 BIOSYNTHESIS. JRNL REF NAT COMMUN V. 9 2826 2018 JRNL REFN ESSN 2041-1723 JRNL PMID 30026518 JRNL DOI 10.1038/S41467-018-05221-5 REMARK 2 REMARK 2 RESOLUTION. 2.91 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.91 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.80 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 17156 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.240 REMARK 3 FREE R VALUE TEST SET COUNT : 899 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.8436 - 5.2608 1.00 2805 164 0.1760 0.2073 REMARK 3 2 5.2608 - 4.1885 1.00 2747 150 0.1572 0.1655 REMARK 3 3 4.1885 - 3.6629 1.00 2669 158 0.1831 0.1965 REMARK 3 4 3.6629 - 3.3297 1.00 2679 159 0.2085 0.2343 REMARK 3 5 3.3297 - 3.0920 1.00 2698 132 0.2622 0.2693 REMARK 3 6 3.0920 - 2.9103 1.00 2659 136 0.2958 0.3440 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.350 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.850 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.014 4743 REMARK 3 ANGLE : 1.236 6446 REMARK 3 CHIRALITY : 0.065 674 REMARK 3 PLANARITY : 0.006 838 REMARK 3 DIHEDRAL : 15.954 1744 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5YY2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 14-DEC-17. REMARK 100 THE DEPOSITION ID IS D_1300006098. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-DEC-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-17A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17162 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.910 REMARK 200 RESOLUTION RANGE LOW (A) : 19.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.9600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.91 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.03 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.01 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG400, PEG1500, HEPES PH7.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 42.29100 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 57.42900 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 78.87500 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 42.29100 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 57.42900 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 78.87500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 42.29100 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 57.42900 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 78.87500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 42.29100 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 57.42900 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 78.87500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12370 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 86960 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -226.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -84.58200 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 -114.85800 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 -84.58200 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 -114.85800 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 SG CYS A 152 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -9 REMARK 465 GLY A -8 REMARK 465 SER A -7 REMARK 465 SER A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 CYS A 3 REMARK 465 THR A 4 REMARK 465 LEU A 5 REMARK 465 ARG A 6 REMARK 465 ASP A 7 REMARK 465 LEU A 8 REMARK 465 ASN A 9 REMARK 465 SER A 10 REMARK 465 LEU A 11 REMARK 465 LEU A 12 REMARK 465 GLU A 13 REMARK 465 ILE A 14 REMARK 465 SER A 15 REMARK 465 SER A 16 REMARK 465 VAL A 17 REMARK 465 ARG A 18 REMARK 465 ASN A 19 REMARK 465 ASP A 20 REMARK 465 ALA A 21 REMARK 465 GLN A 22 REMARK 465 CYS A 23 REMARK 465 CYS A 24 REMARK 465 ARG A 25 REMARK 465 CYS A 26 REMARK 465 PRO A 27 REMARK 465 ALA A 28 REMARK 465 HIS A 29 REMARK 465 ASN A 30 REMARK 465 PRO A 31 REMARK 465 SER A 32 REMARK 465 THR A 33 REMARK 465 ALA A 34 REMARK 465 PHE A 35 REMARK 465 ALA A 36 REMARK 465 PRO A 37 REMARK 465 THR A 38 REMARK 465 THR A 39 REMARK 465 LYS A 40 REMARK 465 VAL A 41 REMARK 465 LYS A 140 REMARK 465 THR A 141 REMARK 465 ARG A 142 REMARK 465 ARG A 143 REMARK 465 PRO A 144 REMARK 465 ALA A 145 REMARK 465 ARG A 184 REMARK 465 GLY A 185 REMARK 465 ALA A 186 REMARK 465 GLY A 187 REMARK 465 GLY A 188 REMARK 465 ASP A 189 REMARK 465 ASN A 190 REMARK 465 SER A 191 REMARK 465 LYS A 192 REMARK 465 ASN A 193 REMARK 465 VAL A 194 REMARK 465 GLY A 195 REMARK 465 ASP A 196 REMARK 465 PHE A 197 REMARK 465 LYS A 361 REMARK 465 PRO A 362 REMARK 465 GLY A 363 REMARK 465 GLU A 364 REMARK 465 LYS A 365 REMARK 465 SER A 366 REMARK 465 PRO A 367 REMARK 465 TYR A 368 REMARK 465 ASP A 576 REMARK 465 GLU A 640 REMARK 465 THR A 641 REMARK 465 LYS A 642 REMARK 465 GLN A 643 REMARK 465 ILE A 644 REMARK 465 ILE A 645 REMARK 465 GLN A 646 REMARK 465 PRO A 647 REMARK 465 THR A 648 REMARK 465 THR A 649 REMARK 465 VAL A 650 REMARK 465 THR A 651 REMARK 465 TRP A 652 REMARK 465 PHE A 653 REMARK 465 ASN A 654 REMARK 465 THR A 655 REMARK 465 ILE A 656 REMARK 465 ARG A 657 REMARK 465 GLY A 658 REMARK 465 TYR A 659 REMARK 465 PHE A 660 REMARK 465 LYS A 661 REMARK 465 ASP A 662 REMARK 465 ALA A 663 REMARK 465 ASP A 664 REMARK 465 ARG A 665 REMARK 465 ALA A 666 REMARK 465 CYS A 667 REMARK 465 MET A 668 REMARK 465 ARG A 669 REMARK 465 SER A 670 REMARK 465 GLU A 671 REMARK 465 TYR A 672 REMARK 465 GLY A 673 REMARK 465 TYR A 674 REMARK 465 ASP A 675 REMARK 465 LEU A 676 REMARK 465 TYR A 677 REMARK 465 ASN A 678 REMARK 465 TYR A 679 REMARK 465 ASP A 680 REMARK 465 HIS A 681 REMARK 465 VAL A 682 REMARK 465 MET A 683 REMARK 465 LEU A 684 REMARK 465 HIS A 685 REMARK 465 ALA A 686 REMARK 465 ASP A 687 REMARK 465 ALA A 688 REMARK 465 ILE A 689 REMARK 465 LEU A 690 REMARK 465 ASP A 691 REMARK 465 ALA A 692 REMARK 465 THR A 693 REMARK 465 ALA A 694 REMARK 465 SER A 695 REMARK 465 LYS A 696 REMARK 465 ARG A 697 REMARK 465 MET A 698 REMARK 465 PRO A 699 REMARK 465 LEU A 700 REMARK 465 GLN A 701 REMARK 465 MET A 702 REMARK 465 GLY A 703 REMARK 465 LYS A 704 REMARK 465 TYR A 705 REMARK 465 THR A 706 REMARK 465 GLN A 707 REMARK 465 ASP A 708 REMARK 465 ASN A 709 REMARK 465 PRO A 710 REMARK 465 ASP A 711 REMARK 465 PRO A 712 REMARK 465 GLU A 713 REMARK 465 HIS A 714 REMARK 465 PRO A 715 REMARK 465 LEU A 716 REMARK 465 TRP A 717 REMARK 465 THR A 718 REMARK 465 VAL A 719 REMARK 465 LYS A 720 REMARK 465 MET A 721 REMARK 465 CYS A 722 REMARK 465 GLU A 723 REMARK 465 ASN A 724 REMARK 465 PHE A 725 REMARK 465 ARG A 726 REMARK 465 ALA A 727 REMARK 465 TRP A 728 REMARK 465 LEU A 729 REMARK 465 LEU A 730 REMARK 465 ASN A 731 REMARK 465 GLY A 732 REMARK 465 CYS A 733 REMARK 465 PRO A 734 REMARK 465 LYS A 735 REMARK 465 GLY A 736 REMARK 465 THR A 737 REMARK 465 ASP A 738 REMARK 465 PRO A 739 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER A 164 OG SER A 448 2.01 REMARK 500 OE1 GLU A 105 NH1 ARG A 108 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CB CYS A 152 SG CYS A 152 3455 1.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 152 CA - CB - SG ANGL. DEV. = 16.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 101 31.05 72.13 REMARK 500 PHE A 137 33.59 -90.94 REMARK 500 PRO A 243 161.01 -49.95 REMARK 500 ILE A 263 -60.60 -104.56 REMARK 500 PRO A 269 153.23 -46.64 REMARK 500 GLU A 411 80.55 -67.38 REMARK 500 SER A 425 47.53 -94.82 REMARK 500 LYS A 449 -44.56 73.39 REMARK 500 THR A 520 0.83 -67.26 REMARK 500 VAL A 542 -60.90 65.60 REMARK 500 PRO A 581 164.20 -49.04 REMARK 500 PRO A 582 33.15 -84.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 801 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 176 NE2 REMARK 620 2 HIS A 180 NE2 96.8 REMARK 620 3 HIS A 208 NE2 99.7 126.8 REMARK 620 4 HOH A 901 O 126.5 109.3 100.3 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 801 DBREF 5YY2 A 1 739 UNP C8VJQ3 C8VJQ3_EMENI 1 731 SEQADV 5YY2 MET A -9 UNP C8VJQ3 EXPRESSION TAG SEQADV 5YY2 GLY A -8 UNP C8VJQ3 EXPRESSION TAG SEQADV 5YY2 SER A -7 UNP C8VJQ3 EXPRESSION TAG SEQADV 5YY2 SER A -6 UNP C8VJQ3 EXPRESSION TAG SEQADV 5YY2 HIS A -5 UNP C8VJQ3 EXPRESSION TAG SEQADV 5YY2 HIS A -4 UNP C8VJQ3 EXPRESSION TAG SEQADV 5YY2 HIS A -3 UNP C8VJQ3 EXPRESSION TAG SEQADV 5YY2 HIS A -2 UNP C8VJQ3 EXPRESSION TAG SEQADV 5YY2 HIS A -1 UNP C8VJQ3 EXPRESSION TAG SEQADV 5YY2 HIS A 0 UNP C8VJQ3 EXPRESSION TAG SEQADV 5YY2 SER A 15 UNP C8VJQ3 INSERTION SEQADV 5YY2 SER A 16 UNP C8VJQ3 INSERTION SEQADV 5YY2 VAL A 17 UNP C8VJQ3 INSERTION SEQADV 5YY2 ARG A 18 UNP C8VJQ3 INSERTION SEQADV 5YY2 ASN A 19 UNP C8VJQ3 INSERTION SEQADV 5YY2 ASP A 20 UNP C8VJQ3 INSERTION SEQADV 5YY2 ALA A 21 UNP C8VJQ3 INSERTION SEQADV 5YY2 GLN A 22 UNP C8VJQ3 INSERTION SEQRES 1 A 749 MET GLY SER SER HIS HIS HIS HIS HIS HIS MET THR CYS SEQRES 2 A 749 THR LEU ARG ASP LEU ASN SER LEU LEU GLU ILE SER SER SEQRES 3 A 749 VAL ARG ASN ASP ALA GLN CYS CYS ARG CYS PRO ALA HIS SEQRES 4 A 749 ASN PRO SER THR ALA PHE ALA PRO THR THR LYS VAL ARG SEQRES 5 A 749 VAL SER SER ASP VAL ARG GLY ILE PHE ALA LEU PRO VAL SEQRES 6 A 749 GLN LYS ASP HIS LYS PRO TYR ASN GLY LEU SER PRO GLU SEQRES 7 A 749 HIS LEU GLU THR MET LYS ALA VAL SER LEU MET LEU ASP SEQRES 8 A 749 ALA ALA GLY PRO LYS LEU GLU ASP GLY ILE SER LYS ALA SEQRES 9 A 749 LYS GLU LEU LEU GLU GLU ARG ILE ASN PRO GLU LEU MET SEQRES 10 A 749 ARG ASP ALA LEU GLY ILE TYR LEU THR HIS SER LYS ASP SEQRES 11 A 749 ALA GLN GLN ARG LYS ILE PHE PRO PRO PRO LEU LYS ASN SEQRES 12 A 749 HIS PRO PHE PHE SER THR LYS THR ARG ARG PRO ALA ASN SEQRES 13 A 749 VAL ALA GLY GLU ILE CYS THR ALA ASP THR LEU HIS GLY SEQRES 14 A 749 HIS ALA LEU LEU SER TYR TRP ARG ASP ASP TYR ASP LEU SEQRES 15 A 749 ASN ASP SER HIS TYR TYR TRP HIS MET VAL TYR ARG GLY SEQRES 16 A 749 ALA GLY GLY ASP ASN SER LYS ASN VAL GLY ASP PHE ASP SEQRES 17 A 749 ARG HIS GLY GLU VAL PHE LEU TYR VAL HIS SER GLN MET SEQRES 18 A 749 VAL ALA ARG TYR GLU THR GLU SER LEU CYS TRP SER LEU SEQRES 19 A 749 PRO LEU VAL ARG PRO TRP ASN GLN TYR ASP ASP PHE LEU SEQRES 20 A 749 GLU ASN GLY TYR ALA PRO ILE SER SER LEU ILE GLU HIS SEQRES 21 A 749 TYR GLY GLY TYR PRO PRO PHE SER THR TRP TYR SER ILE SEQRES 22 A 749 ARG ASN PRO ASP MET PRO ASP THR LEU ASN VAL THR ILE SEQRES 23 A 749 PRO ARG ALA ARG LEU GLU GLU TRP ARG ASP ASN ILE TYR SEQRES 24 A 749 ALA ALA ILE ARG LYS GLY GLN PHE GLU THR THR SER LYS SEQRES 25 A 749 ASP LYS PRO LEU VAL LEU THR ARG ASP ASN CYS LEU ASN SEQRES 26 A 749 PHE VAL GLY GLY ILE LEU ASP ALA GLN TYR PRO SER LEU SEQRES 27 A 749 ASN LYS LEU LEU GLY GLY CYS SER LEU ASP GLU GLU ARG SEQRES 28 A 749 TYR GLY ASN LEU HIS ASN TYR GLY LEU GLY LYS PHE ALA SEQRES 29 A 749 GLU MET ALA TYR ARG ASN LYS PRO GLY GLU LYS SER PRO SEQRES 30 A 749 TYR GLY LEU THR ILE SER ASN PHE GLY ALA PRO ARG ASP SEQRES 31 A 749 PRO CYS PHE TRP ARG TRP TYR LYS HIS LEU GLN TYR TYR SEQRES 32 A 749 GLY ARG LEU ALA ALA THR ARG TYR PRO GLN ASP ILE THR SEQRES 33 A 749 ALA HIS ARG ALA GLU VAL VAL LEU SER ASN LEU VAL VAL SEQRES 34 A 749 ARG LEU GLN ASP ARG SER SER PRO HIS TYR LEU ASP GLY SEQRES 35 A 749 HIS ILE THR THR PHE LEU GLY PRO PRO ALA VAL ASN PHE SEQRES 36 A 749 MET GLU SER LYS ALA LYS LEU GLY HIS GLU PRO TYR GLU SEQRES 37 A 749 TRP ASN VAL GLN VAL LYS SER CYS ARG ARG SER PRO PRO SEQRES 38 A 749 SER LYS GLU ASN PRO GLN THR LEU THR LEU ARG LEU PHE SEQRES 39 A 749 ILE ALA ALA GLU ASP LEU MET ASN ASP TYR HIS SER TRP SEQRES 40 A 749 ILE GLU MET ASP ARG ALA THR VAL GLN LEU THR ASP GLU SEQRES 41 A 749 SER ALA ILE THR LYS VAL ARG LEU ASP THR ASP SER SER SEQRES 42 A 749 VAL ALA ARG LYS MET GLY ASN TYR GLY GLU PRO ASP PRO SEQRES 43 A 749 ARG TYR ALA SER ALA VAL PHE ARG HIS GLY TRP PRO GLN SEQRES 44 A 749 ASN LEU MET LEU PRO VAL GLY LYS VAL GLU GLY MET PRO SEQRES 45 A 749 PHE VAL ALA PHE CYS ILE ALA THR ASP ASP GLY ILE PRO SEQRES 46 A 749 ASP PRO ALA PRO ALA PRO PRO PHE HIS HIS TYR HIS ASP SEQRES 47 A 749 PRO ARG GLY MET GLY TYR PRO PHE ASN ARG ALA TRP THR SEQRES 48 A 749 GLN LEU THR GLU ASP SER THR GLY LYS ALA SER ILE ARG SEQRES 49 A 749 THR ILE ILE SER ASN ALA GLU LEU TYR PRO PHE ILE THR SEQRES 50 A 749 SER THR THR PHE LYS ILE TYR ARG THR THR LYS PHE GLU SEQRES 51 A 749 THR LYS GLN ILE ILE GLN PRO THR THR VAL THR TRP PHE SEQRES 52 A 749 ASN THR ILE ARG GLY TYR PHE LYS ASP ALA ASP ARG ALA SEQRES 53 A 749 CYS MET ARG SER GLU TYR GLY TYR ASP LEU TYR ASN TYR SEQRES 54 A 749 ASP HIS VAL MET LEU HIS ALA ASP ALA ILE LEU ASP ALA SEQRES 55 A 749 THR ALA SER LYS ARG MET PRO LEU GLN MET GLY LYS TYR SEQRES 56 A 749 THR GLN ASP ASN PRO ASP PRO GLU HIS PRO LEU TRP THR SEQRES 57 A 749 VAL LYS MET CYS GLU ASN PHE ARG ALA TRP LEU LEU ASN SEQRES 58 A 749 GLY CYS PRO LYS GLY THR ASP PRO HET ZN A 801 1 HETNAM ZN ZINC ION FORMUL 2 ZN ZN 2+ FORMUL 3 HOH *(H2 O) HELIX 1 AA1 ARG A 42 ALA A 52 1 11 HELIX 2 AA2 SER A 66 ALA A 82 1 17 HELIX 3 AA3 LYS A 86 GLU A 100 1 15 HELIX 4 AA4 ASN A 103 HIS A 117 1 15 HELIX 5 AA5 SER A 118 ARG A 124 1 7 HELIX 6 AA6 PRO A 130 SER A 138 5 9 HELIX 7 AA7 HIS A 160 LEU A 162 5 3 HELIX 8 AA8 LEU A 163 ASP A 169 1 7 HELIX 9 AA9 ASP A 169 TYR A 183 1 15 HELIX 10 AB1 ARG A 199 TRP A 222 1 24 HELIX 11 AB2 PRO A 277 GLY A 295 1 19 HELIX 12 AB3 ASN A 312 ASP A 322 1 11 HELIX 13 AB4 GLN A 324 LYS A 330 1 7 HELIX 14 AB5 ASP A 338 GLY A 343 1 6 HELIX 15 AB6 ASN A 344 ALA A 357 1 14 HELIX 16 AB7 CYS A 382 THR A 399 1 18 HELIX 17 AB8 ALA A 442 MET A 446 5 5 HELIX 18 AB9 ASP A 489 MET A 491 5 3 HELIX 19 AC1 ASP A 493 TRP A 497 5 5 HELIX 20 AC2 THR A 520 SER A 522 5 3 HELIX 21 AC3 GLY A 529 GLU A 533 5 5 HELIX 22 AC4 ASP A 535 ALA A 539 5 5 HELIX 23 AC5 TRP A 600 GLU A 605 1 6 HELIX 24 AC6 SER A 612 ILE A 617 1 6 SHEET 1 AA1 2 GLN A 296 PHE A 297 0 SHEET 2 AA1 2 LEU A 306 VAL A 307 -1 O LEU A 306 N PHE A 297 SHEET 1 AA2 3 VAL A 412 LEU A 421 0 SHEET 2 AA2 3 TYR A 457 SER A 465 -1 O ASN A 460 N VAL A 418 SHEET 3 AA2 3 ILE A 513 LEU A 518 -1 O ARG A 517 N TRP A 459 SHEET 1 AA3 6 LYS A 451 HIS A 454 0 SHEET 2 AA3 6 HIS A 433 GLY A 439 -1 N GLY A 439 O LYS A 451 SHEET 3 AA3 6 ILE A 626 TYR A 634 1 O TYR A 634 N THR A 436 SHEET 4 AA3 6 MET A 561 THR A 570 -1 N MET A 561 O ILE A 633 SHEET 5 AA3 6 GLN A 477 ALA A 487 -1 N ALA A 486 O VAL A 564 SHEET 6 AA3 6 ILE A 498 LEU A 507 -1 O MET A 500 N LEU A 483 LINK NE2 HIS A 176 ZN ZN A 801 1555 1555 2.02 LINK NE2 HIS A 180 ZN ZN A 801 1555 1555 1.93 LINK NE2 HIS A 208 ZN ZN A 801 1555 1555 2.03 LINK ZN ZN A 801 O HOH A 901 1555 1555 1.99 CISPEP 1 PRO A 427 HIS A 428 0 8.22 CISPEP 2 GLY A 573 ILE A 574 0 11.94 CISPEP 3 PRO A 581 PRO A 582 0 -9.05 CISPEP 4 TYR A 594 PRO A 595 0 7.49 SITE 1 AC1 4 HIS A 176 HIS A 180 HIS A 208 HOH A 901 CRYST1 84.582 114.858 157.750 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011823 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008706 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006339 0.00000