HEADER HYDROLASE 15-DEC-17 5YZK TITLE SOLUTION STRUCTURE OF LYSM DOMAIN FROM A CHITINASE DERIVED FROM VOLVOX TITLE 2 CARTERI COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHITINASE, LYSOZYME; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: LYSM; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VOLVOX CARTERI F. NAGARIENSIS; SOURCE 3 ORGANISM_TAXID: 3068; SOURCE 4 GENE: CHI4, VOLCADRAFT_127242; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS LYSIN MOTIF, CHITIN-SPECIFIC, CBM50, SUGAR BINDING PROTEIN, HYDROLASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR Y.KITAOKU,S.NISHIMURA,T.FUKAMIZO,T.OHNUMA REVDAT 3 14-JUN-23 5YZK 1 REMARK REVDAT 2 22-JUN-22 5YZK 1 JRNL REMARK SSBOND REVDAT 1 19-DEC-18 5YZK 0 JRNL AUTH Y.KITAOKU,S.NISHIMURA,T.HIRONO,W.SUGINTA,T.OHNUMA,T.FUKAMIZO JRNL TITL STRUCTURES AND CHITIN-BINDING PROPERTIES OF TWO N-TERMINAL JRNL TITL 2 LYSIN MOTIFS (LYSMS) FOUND IN A CHITINASE FROM VOLVOX JRNL TITL 3 CARTERI. JRNL REF GLYCOBIOLOGY V. 29 565 2019 JRNL REFN ESSN 1460-2423 JRNL PMID 30976779 JRNL DOI 10.1093/GLYCOB/CWZ024 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5YZK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-DEC-17. REMARK 100 THE DEPOSITION ID IS D_1300006151. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 300; 300 REMARK 210 PH : 5.0; 5.0 REMARK 210 IONIC STRENGTH : 20; 20 REMARK 210 PRESSURE : 1 ATM; 1 ATM REMARK 210 SAMPLE CONTENTS : 194 UM [U-13C; U-15N] LYSM, 20 REMARK 210 MM [U-2H] SODIUM ACETATE, 90% REMARK 210 H2O/10% D2O; 359 UM [U-13C; U- REMARK 210 15N] LYSM, 20 MM [U-13C; U-15N] REMARK 210 SODIUM ACETATE, 100% D2O; 287 UM REMARK 210 [U-13C; U-15N] LYSM, 20 MM [U-2H] REMARK 210 SODIUM ACETATE, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCO; 3D REMARK 210 HNCACO; 3D CBCA(CO)NH; 3D HNCACB; REMARK 210 3D 1H-15N NOESY; 3D 1H-15N REMARK 210 TOCSY; 3D HBHACBCACONH; 2D 1H- REMARK 210 13C HSQC; 3D 1H-13C NOESY REMARK 210 ALIPHATIC; 3D 1H-13C NOESY REMARK 210 AROMATIC; 3D HCCH-TOCSY; 3D CCH- REMARK 210 TOCSY; 2D DQF-COSY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN, NMRPIPE, NMRDRAW, REMARK 210 SPARKY, CYANA REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PHE A 95 -70.86 -54.51 REMARK 500 1 ASN A 113 68.15 -117.96 REMARK 500 1 ARG A 120 115.33 -170.56 REMARK 500 2 ASN A 113 68.29 -117.67 REMARK 500 3 ASN A 113 68.34 -117.64 REMARK 500 4 PRO A 91 107.79 -46.52 REMARK 500 4 ASN A 113 67.97 -117.93 REMARK 500 4 ARG A 120 108.16 -173.34 REMARK 500 4 PRO A 130 83.91 -69.73 REMARK 500 5 PRO A 91 92.79 -59.67 REMARK 500 5 ARG A 120 49.68 -151.63 REMARK 500 5 PRO A 130 87.84 -69.76 REMARK 500 6 PRO A 91 94.12 -58.16 REMARK 500 6 GLN A 100 -73.06 -51.66 REMARK 500 6 ASN A 113 67.61 -118.69 REMARK 500 6 ARG A 120 40.82 -143.32 REMARK 500 6 PRO A 130 91.00 -69.80 REMARK 500 7 PRO A 91 92.88 -59.41 REMARK 500 7 GLN A 100 -72.77 -51.93 REMARK 500 7 ASN A 113 67.85 -118.03 REMARK 500 7 ARG A 120 104.17 -178.36 REMARK 500 8 ASN A 113 67.89 -117.83 REMARK 500 9 PRO A 91 93.61 -58.54 REMARK 500 9 ASN A 113 67.33 -118.50 REMARK 500 9 ARG A 120 43.62 -144.07 REMARK 500 9 PRO A 130 91.61 -69.78 REMARK 500 10 PHE A 95 -70.02 -54.64 REMARK 500 10 GLN A 100 -70.74 -51.92 REMARK 500 10 ASN A 113 67.28 -118.51 REMARK 500 11 PRO A 91 94.47 -57.95 REMARK 500 11 ASN A 113 67.84 -118.18 REMARK 500 11 ARG A 120 55.02 -91.83 REMARK 500 11 PRO A 130 90.87 -69.80 REMARK 500 12 PRO A 91 101.07 -47.33 REMARK 500 12 GLN A 100 -74.11 -52.59 REMARK 500 12 ASN A 113 68.58 -117.37 REMARK 500 13 PRO A 91 101.53 -46.14 REMARK 500 13 ASN A 113 68.29 -117.83 REMARK 500 13 ARG A 120 49.67 -143.77 REMARK 500 13 PRO A 130 86.58 -69.77 REMARK 500 14 PRO A 91 101.22 -47.28 REMARK 500 14 ASN A 113 68.06 -117.66 REMARK 500 15 PRO A 91 101.27 -46.78 REMARK 500 15 ASN A 113 67.96 -117.97 REMARK 500 16 PRO A 91 105.15 -45.86 REMARK 500 16 ASN A 113 67.86 -117.72 REMARK 500 17 PRO A 91 93.12 -58.81 REMARK 500 17 ASN A 113 67.57 -118.06 REMARK 500 17 ARG A 120 111.56 -177.33 REMARK 500 18 ASN A 113 67.91 -118.45 REMARK 500 REMARK 500 THIS ENTRY HAS 58 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5YZ6 RELATED DB: PDB REMARK 900 RELATED ID: 12002 RELATED DB: BMRB DBREF 5YZK A 84 131 UNP D8UFB5 D8UFB5_VOLCA 104 151 SEQADV 5YZK MET A 83 UNP D8UFB5 INITIATING METHIONINE SEQRES 1 A 49 MET GLY CYS THR TYR THR ILE GLN PRO GLY ASP THR PHE SEQRES 2 A 49 TRP ALA ILE ALA GLN ARG ARG GLY THR THR VAL ASP VAL SEQRES 3 A 49 ILE GLN SER LEU ASN PRO GLY VAL ASN PRO ALA ARG LEU SEQRES 4 A 49 GLN VAL GLY GLN VAL ILE ASN VAL PRO CYS HELIX 1 AA1 THR A 94 GLY A 103 1 10 HELIX 2 AA2 THR A 105 ASN A 113 1 9 SHEET 1 AA1 2 THR A 86 ILE A 89 0 SHEET 2 AA1 2 GLN A 125 ASN A 128 -1 O ILE A 127 N TYR A 87 SSBOND 1 CYS A 85 CYS A 131 1555 1555 2.00 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1