HEADER TRANSFERASE 22-DEC-17 5Z0Y TITLE CRYSTALLIZATION AND STRUCTURE DETERMINATION OF CYTOPLASM SERINE TITLE 2 HYDROXYMETHYLTRANSFERASE (SHMT) FROM PICHIA PASTORIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE HYDROXYMETHYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 EC: 2.1.2.1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: KOMAGATAELLA PHAFFII (STRAIN ATCC 76273 / CBS SOURCE 3 7435 / CECT 11047 / NRRL Y-11430 / WEGNER 21-1); SOURCE 4 ORGANISM_COMMON: YEAST; SOURCE 5 ORGANISM_TAXID: 981350; SOURCE 6 STRAIN: ATCC 76273 / CBS 7435 / CECT 11047 / NRRL Y-11430 / WEGNER SOURCE 7 21-1; SOURCE 8 GENE: SHM2, PP7435_CHR4-0570; SOURCE 9 EXPRESSION_SYSTEM: KOMAGATAELLA PASTORIS; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 4922 KEYWDS SHMT, PICHIA PASTORIS, CYTOPLASM SERINE HYDROXYMETHYLTRANSFERASE, KEYWDS 2 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR Z.CHEN,M.ZHANG REVDAT 2 22-NOV-23 5Z0Y 1 REMARK REVDAT 1 14-MAR-18 5Z0Y 0 JRNL AUTH M.ZHANG,W.WU,Z.CHEN JRNL TITL STRUCTURE AND FUNCTION OF CYTOPLASMIC SERINE JRNL TITL 2 HYDROXYMETHYLTRANSFERASE FROM PICHIA PASTORIS JRNL REF BIOCHEM. BIOPHYS. RES. V. 496 753 2018 JRNL REF 2 COMMUN. JRNL REFN ESSN 1090-2104 JRNL PMID 29339156 JRNL DOI 10.1016/J.BBRC.2018.01.084 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0103 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 16985 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.228 REMARK 3 R VALUE (WORKING SET) : 0.227 REMARK 3 FREE R VALUE : 0.260 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 883 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.57 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1185 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.00 REMARK 3 BIN R VALUE (WORKING SET) : 0.4090 REMARK 3 BIN FREE R VALUE SET COUNT : 76 REMARK 3 BIN FREE R VALUE : 0.4000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2794 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 60 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 68.93 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 9.99000 REMARK 3 B22 (A**2) : -3.46000 REMARK 3 B33 (A**2) : -6.53000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.415 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.272 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.276 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 14.529 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.929 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2843 ; 0.007 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2700 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3844 ; 1.109 ; 1.966 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6191 ; 0.878 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 366 ; 5.468 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 113 ;35.875 ;24.425 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 471 ;14.327 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;14.368 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 448 ; 0.059 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3201 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 605 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1482 ; 2.330 ; 7.057 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1481 ; 2.329 ; 7.055 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1842 ; 3.952 ;10.556 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1843 ; 3.951 ;10.559 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1361 ; 2.232 ; 7.294 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1361 ; 2.232 ; 7.294 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2003 ; 3.864 ;10.871 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3053 ; 6.262 ;54.987 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3048 ; 6.261 ;54.975 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5Z0Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-DEC-17. REMARK 100 THE DEPOSITION ID IS D_1300006238. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-JUL-17 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL18U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17959 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 9.500 REMARK 200 R MERGE (I) : 0.09500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 2.4600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.54 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.92400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: BALBES REMARK 200 STARTING MODEL: 1LS3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.54 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18% PEG8000, 0.1M MES PH 6.0, 0.2M REMARK 280 CA(OAC)2, VAPOR DIFFUSION, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 42.07850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 42.07850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 52.65750 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 57.37150 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 52.65750 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 57.37150 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 42.07850 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 52.65750 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 57.37150 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 42.07850 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 52.65750 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 57.37150 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1690 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34890 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 HIS A 3 REMARK 465 TYR A 4 REMARK 465 ALA A 5 REMARK 465 LEU A 6 REMARK 465 SER A 7 REMARK 465 PRO A 8 REMARK 465 GLU A 9 REMARK 465 HIS A 10 REMARK 465 LYS A 11 REMARK 465 GLN A 12 REMARK 465 MET A 13 REMARK 465 VAL A 14 REMARK 465 GLU A 15 REMARK 465 GLY A 16 REMARK 465 HIS A 17 REMARK 465 LEU A 18 REMARK 465 ALA A 19 REMARK 465 ALA A 44 REMARK 465 SER A 45 REMARK 465 GLU A 46 REMARK 465 ASN A 47 REMARK 465 PHE A 48 REMARK 465 THR A 49 REMARK 465 SER A 50 REMARK 465 THR A 51 REMARK 465 SER A 52 REMARK 465 VAL A 53 REMARK 465 PHE A 54 REMARK 465 ASP A 55 REMARK 465 ALA A 56 REMARK 465 LEU A 57 REMARK 465 GLY A 58 REMARK 465 THR A 59 REMARK 465 PRO A 60 REMARK 465 MET A 61 REMARK 465 CYS A 62 REMARK 465 ASN A 63 REMARK 465 LYS A 64 REMARK 465 TYR A 65 REMARK 465 SER A 66 REMARK 465 GLU A 67 REMARK 465 GLY A 68 REMARK 465 TYR A 69 REMARK 465 PRO A 70 REMARK 465 GLY A 71 REMARK 465 ALA A 72 REMARK 465 ARG A 73 REMARK 465 TYR A 74 REMARK 465 TYR A 75 REMARK 465 GLY A 76 REMARK 465 GLY A 77 REMARK 465 ASN A 78 REMARK 465 GLU A 79 REMARK 465 HIS A 80 REMARK 465 ILE A 81 REMARK 465 GLY A 112 REMARK 465 SER A 113 REMARK 465 GLY A 138 REMARK 465 GLY A 139 REMARK 465 HIS A 140 REMARK 465 LEU A 141 REMARK 465 SER A 142 REMARK 465 HIS A 143 REMARK 465 GLY A 144 REMARK 465 TYR A 145 REMARK 465 GLN A 146 REMARK 465 THR A 147 REMARK 465 ASP A 148 REMARK 465 THR A 149 REMARK 465 ARG A 150 REMARK 465 LYS A 151 REMARK 465 ILE A 152 REMARK 465 SER A 153 REMARK 465 ALA A 154 REMARK 465 VAL A 155 REMARK 465 SER A 156 REMARK 465 VAL A 268 REMARK 465 ASN A 269 REMARK 465 PRO A 270 REMARK 465 LYS A 271 REMARK 465 THR A 272 REMARK 465 GLY A 273 REMARK 465 LYS A 274 REMARK 465 GLU A 275 REMARK 465 ILE A 276 REMARK 465 PHE A 289 REMARK 465 PRO A 290 REMARK 465 GLY A 291 REMARK 465 HIS A 292 REMARK 465 GLN A 293 REMARK 465 GLY A 294 REMARK 465 GLY A 295 REMARK 465 PRO A 296 REMARK 465 HIS A 297 REMARK 465 ASN A 298 REMARK 465 VAL A 470 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 20 CG CD OE1 OE2 REMARK 470 THR A 21 OG1 CG2 REMARK 470 ASP A 22 CG OD1 OD2 REMARK 470 LYS A 30 CG CD CE NZ REMARK 470 ASP A 31 OD2 REMARK 470 VAL A 33 CG2 REMARK 470 ARG A 35 CD NE CZ NH1 NH2 REMARK 470 LYS A 37 CG CD CE NZ REMARK 470 VAL A 41 CG2 REMARK 470 ASP A 82 CG OD1 OD2 REMARK 470 ARG A 83 CG CD NE CZ NH1 NH2 REMARK 470 MET A 84 CE REMARK 470 ILE A 86 CD1 REMARK 470 GLN A 90 CD OE1 NE2 REMARK 470 LYS A 94 CD CE NZ REMARK 470 ARG A 102 CG CD NE CZ NH1 NH2 REMARK 470 THR A 109 CG2 REMARK 470 LEU A 110 CG CD1 CD2 REMARK 470 LYS A 125 CE NZ REMARK 470 HIS A 127 CG ND1 CD2 CE1 NE2 REMARK 470 LEU A 130 CD2 REMARK 470 TYR A 158 CD1 CD2 CE1 CE2 CZ OH REMARK 470 PHE A 159 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LEU A 168 CD1 REMARK 470 GLU A 169 CD OE1 OE2 REMARK 470 LYS A 180 CE NZ REMARK 470 THR A 181 CG2 REMARK 470 TYR A 185 OH REMARK 470 LYS A 188 CG CD CE NZ REMARK 470 SER A 195 OG REMARK 470 LYS A 212 NZ REMARK 470 VAL A 265 CG1 CG2 REMARK 470 TYR A 277 CE1 CE2 CZ OH REMARK 470 SER A 287 OG REMARK 470 ILE A 301 CD1 REMARK 470 ALA A 303 CB REMARK 470 LEU A 304 CD1 CD2 REMARK 470 LYS A 309 NZ REMARK 470 GLN A 318 CG CD OE1 NE2 REMARK 470 LYS A 325 CE NZ REMARK 470 LYS A 340 CE NZ REMARK 470 MET A 350 CE REMARK 470 ASP A 359 OD1 OD2 REMARK 470 ARG A 385 NE CZ NH1 NH2 REMARK 470 GLU A 408 CG CD OE1 OE2 REMARK 470 LYS A 419 CE NZ REMARK 470 LYS A 437 CE NZ REMARK 470 ASP A 450 CG OD1 OD2 REMARK 470 GLN A 454 NE2 REMARK 470 LYS A 456 CE NZ REMARK 470 GLU A 465 OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 22 -67.74 -168.80 REMARK 500 LYS A 249 -99.95 -77.86 REMARK 500 LEU A 468 62.27 -104.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 659 DISTANCE = 6.02 ANGSTROMS REMARK 525 HOH A 660 DISTANCE = 7.22 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 501 DBREF 5Z0Y A 1 470 UNP F2QZA4 F2QZA4_KOMPC 1 470 SEQRES 1 A 470 MET SER HIS TYR ALA LEU SER PRO GLU HIS LYS GLN MET SEQRES 2 A 470 VAL GLU GLY HIS LEU ALA GLU THR ASP PRO GLU VAL ASN SEQRES 3 A 470 GLN ILE ILE LYS ASP GLU VAL ASP ARG GLN LYS HIS SER SEQRES 4 A 470 ILE VAL LEU ILE ALA SER GLU ASN PHE THR SER THR SER SEQRES 5 A 470 VAL PHE ASP ALA LEU GLY THR PRO MET CYS ASN LYS TYR SEQRES 6 A 470 SER GLU GLY TYR PRO GLY ALA ARG TYR TYR GLY GLY ASN SEQRES 7 A 470 GLU HIS ILE ASP ARG MET GLU ILE LEU CYS GLN GLN ARG SEQRES 8 A 470 ALA LEU LYS ALA PHE HIS LEU ASP GLY SER ARG TRP GLY SEQRES 9 A 470 VAL ASN VAL GLN THR LEU SER GLY SER PRO ALA ASN LEU SEQRES 10 A 470 GLN VAL TYR GLN ALA ILE MET LYS PRO HIS ASP ARG LEU SEQRES 11 A 470 MET GLY LEU ASP LEU PRO HIS GLY GLY HIS LEU SER HIS SEQRES 12 A 470 GLY TYR GLN THR ASP THR ARG LYS ILE SER ALA VAL SER SEQRES 13 A 470 THR TYR PHE GLU THR MET PRO TYR ARG VAL ASP LEU GLU SEQRES 14 A 470 THR GLY ILE ILE ASP TYR ASP MET LEU GLU LYS THR ALA SEQRES 15 A 470 VAL LEU TYR ARG PRO LYS VAL LEU VAL ALA GLY THR SER SEQRES 16 A 470 ALA TYR CYS ARG LEU ILE ASP TYR LYS ARG MET ARG GLU SEQRES 17 A 470 ILE ALA ASP LYS VAL GLY ALA TYR LEU VAL VAL ASP MET SEQRES 18 A 470 ALA HIS ILE SER GLY LEU ILE ALA ALA GLY VAL ILE PRO SEQRES 19 A 470 SER PRO PHE GLU TYR ALA ASP ILE VAL THR THR THR THR SEQRES 20 A 470 HIS LYS SER LEU ARG GLY PRO ARG GLY ALA MET ILE PHE SEQRES 21 A 470 PHE ARG LYS GLY VAL ARG SER VAL ASN PRO LYS THR GLY SEQRES 22 A 470 LYS GLU ILE TYR TYR ASP LEU GLU ASN PRO ILE ASN PHE SEQRES 23 A 470 SER VAL PHE PRO GLY HIS GLN GLY GLY PRO HIS ASN HIS SEQRES 24 A 470 THR ILE ALA ALA LEU ALA THR ALA LEU LYS GLN ALA ALA SEQRES 25 A 470 THR PRO GLU PHE LYS GLN TYR GLN GLU GLN VAL LEU LYS SEQRES 26 A 470 ASN ALA LYS ALA LEU GLU ASN GLU PHE LYS ARG LEU GLY SEQRES 27 A 470 TYR LYS LEU VAL SER ASP GLY THR ASP SER HIS MET VAL SEQRES 28 A 470 LEU VAL SER LEU LYS ASP LYS ASP ILE ASP GLY ALA ARG SEQRES 29 A 470 ILE GLU THR VAL CYS GLU ASN ILE ASN ILE ALA LEU ASN SEQRES 30 A 470 LYS ASN SER ILE PRO GLY ASP ARG SER ALA LEU VAL PRO SEQRES 31 A 470 GLY GLY VAL ARG ILE GLY ALA PRO ALA MET THR THR ARG SEQRES 32 A 470 GLY ALA SER GLU GLU ASP PHE VAL LYS ILE ALA ASN TYR SEQRES 33 A 470 ILE ASP LYS SER VAL GLN TYR ALA LYS LYS VAL GLN SER SEQRES 34 A 470 GLU LEU PRO ILE GLU ALA ASN LYS LEU LYS ASP PHE LYS SEQRES 35 A 470 ALA LYS ILE ALA GLU GLY SER ASP GLU ILE THR GLN LEU SEQRES 36 A 470 LYS ASN GLU ILE SER ALA TRP ALA GLY GLU PHE PRO LEU SEQRES 37 A 470 SER VAL HET GOL A 501 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 GOL C3 H8 O3 FORMUL 3 HOH *60(H2 O) HELIX 1 AA1 GLU A 24 HIS A 38 1 15 HELIX 2 AA2 ARG A 83 PHE A 96 1 14 HELIX 3 AA3 ALA A 115 MET A 124 1 10 HELIX 4 AA4 ASP A 174 ARG A 186 1 13 HELIX 5 AA5 ASP A 202 GLY A 214 1 13 HELIX 6 AA6 ILE A 224 ALA A 230 1 7 HELIX 7 AA7 SER A 235 TYR A 239 5 5 HELIX 8 AA8 LEU A 280 VAL A 288 1 9 HELIX 9 AA9 THR A 300 ALA A 312 1 13 HELIX 10 AB1 THR A 313 LEU A 337 1 25 HELIX 11 AB2 LEU A 341 GLY A 345 5 5 HELIX 12 AB3 LYS A 356 ASP A 359 5 4 HELIX 13 AB4 ASP A 361 ILE A 372 1 12 HELIX 14 AB5 ALA A 397 ARG A 403 1 7 HELIX 15 AB6 SER A 406 LEU A 431 1 26 HELIX 16 AB7 PRO A 432 ASN A 436 5 5 HELIX 17 AB8 LYS A 437 GLU A 447 1 11 HELIX 18 AB9 SER A 449 GLU A 465 1 17 SHEET 1 AA1 2 ILE A 40 VAL A 41 0 SHEET 2 AA1 2 ILE A 374 ALA A 375 1 O ALA A 375 N ILE A 40 SHEET 1 AA2 7 TRP A 103 GLN A 108 0 SHEET 2 AA2 7 ALA A 257 ARG A 262 -1 O PHE A 261 N GLY A 104 SHEET 3 AA2 7 ILE A 242 THR A 246 -1 N VAL A 243 O PHE A 260 SHEET 4 AA2 7 TYR A 216 ASP A 220 1 N VAL A 219 O ILE A 242 SHEET 5 AA2 7 VAL A 189 ALA A 192 1 N LEU A 190 O TYR A 216 SHEET 6 AA2 7 ARG A 129 LEU A 133 1 N MET A 131 O VAL A 191 SHEET 7 AA2 7 GLU A 160 TYR A 164 1 O GLU A 160 N LEU A 130 SHEET 1 AA3 3 MET A 350 SER A 354 0 SHEET 2 AA3 3 GLY A 392 GLY A 396 -1 O ILE A 395 N VAL A 351 SHEET 3 AA3 3 ASN A 377 ASN A 379 -1 N ASN A 377 O ARG A 394 SITE 1 AC1 6 LEU A 98 ASP A 99 ARG A 102 TRP A 103 SITE 2 AC1 6 HOH A 602 HOH A 605 CRYST1 105.315 114.743 84.157 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009495 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008715 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011883 0.00000