data_5Z1I # _entry.id 5Z1I # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5Z1I pdb_00005z1i 10.2210/pdb5z1i/pdb WWPDB D_1300006292 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2018-05-30 2 'Structure model' 1 1 2018-09-05 3 'Structure model' 1 2 2024-03-27 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' chem_comp_atom 4 3 'Structure model' chem_comp_bond 5 3 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.page_first' 3 2 'Structure model' '_citation.page_last' 4 2 'Structure model' '_citation_author.identifier_ORCID' 5 3 'Structure model' '_database_2.pdbx_DOI' 6 3 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5Z1I _pdbx_database_status.recvd_initial_deposition_date 2017-12-26 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # _pdbx_database_related.db_name PDB _pdbx_database_related.details '5Z1H contains the same ligand coded FSI.' _pdbx_database_related.db_id 5Z1H _pdbx_database_related.content_type unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Kanazawa, H.' 1 ? 'Hanessian, S.' 2 ? 'Kondo, J.' 3 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country DE _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev ChemMedChem _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1860-7187 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 13 _citation.language ? _citation.page_first 1541 _citation.page_last 1548 _citation.title 'Structure-Based Design of a Eukaryote-Selective Antiprotozoal Fluorinated Aminoglycoside.' _citation.year 2018 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1002/cmdc.201800166 _citation.pdbx_database_id_PubMed 29766661 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Kanazawa, H.' 1 ? primary 'Saavedra, O.M.' 2 ? primary 'Maianti, J.P.' 3 ? primary 'Young, S.A.' 4 ? primary 'Izquierdo, L.' 5 ? primary 'Smith, T.K.' 6 ? primary 'Hanessian, S.' 7 ? primary 'Kondo, J.' 8 0000-0002-5682-3685 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;RNA (5'-R(P*GP*CP*GP*UP*CP*GP*CP*GP*CP*CP*GP*GP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3') ; 6774.093 1 ? ? ? ? 2 non-polymer man ;(1S,2S,3R,4S,6R)-4,6-diamino-3-{[(2S,3R)-3-amino-6-(fluoromethyl)-3,4-dihydro-2H-pyran-2-yl]oxy}-2-hydroxycyclohexyl 3-deoxy-4-C-methyl-3-(methylamino)-beta-L-arabinopyranoside ; 450.502 1 ? ? ? ? 3 water nat water 18.015 73 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GCGUCGCGCCGGCGAAGUCGC _entity_poly.pdbx_seq_one_letter_code_can GCGUCGCGCCGGCGAAGUCGC _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 ;(1S,2S,3R,4S,6R)-4,6-diamino-3-{[(2S,3R)-3-amino-6-(fluoromethyl)-3,4-dihydro-2H-pyran-2-yl]oxy}-2-hydroxycyclohexyl 3-deoxy-4-C-methyl-3-(methylamino)-beta-L-arabinopyranoside ; FSJ 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 C n 1 3 G n 1 4 U n 1 5 C n 1 6 G n 1 7 C n 1 8 G n 1 9 C n 1 10 C n 1 11 G n 1 12 G n 1 13 C n 1 14 G n 1 15 A n 1 16 A n 1 17 G n 1 18 U n 1 19 C n 1 20 G n 1 21 C n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 21 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 FSJ non-polymer . ;(1S,2S,3R,4S,6R)-4,6-diamino-3-{[(2S,3R)-3-amino-6-(fluoromethyl)-3,4-dihydro-2H-pyran-2-yl]oxy}-2-hydroxycyclohexyl 3-deoxy-4-C-methyl-3-(methylamino)-beta-L-arabinopyranoside ; ;6'-fluoro sisomicin ; 'C19 H35 F N4 O7' 450.502 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 3 3 G G A . n A 1 2 C 2 4 4 C C A . n A 1 3 G 3 5 5 G G A . n A 1 4 U 4 6 6 U U A . n A 1 5 C 5 7 7 C C A . n A 1 6 G 6 8 8 G G A . n A 1 7 C 7 9 9 C C A . n A 1 8 G 8 10 10 G G A . n A 1 9 C 9 11 11 C C A . n A 1 10 C 10 12 12 C C A . n A 1 11 G 11 13 13 G G A . n A 1 12 G 12 14 14 G G A . n A 1 13 C 13 15 15 C C A . n A 1 14 G 14 16 16 G G A . n A 1 15 A 15 17 17 A A A . n A 1 16 A 16 18 18 A A A . n A 1 17 G 17 19 19 G G A . n A 1 18 U 18 20 20 U U A . n A 1 19 C 19 21 21 C C A . n A 1 20 G 20 22 22 G G A . n A 1 21 C 21 23 23 C C A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FSJ 1 301 301 FSJ FSI A . C 3 HOH 1 401 170 HOH HOH A . C 3 HOH 2 402 143 HOH HOH A . C 3 HOH 3 403 119 HOH HOH A . C 3 HOH 4 404 150 HOH HOH A . C 3 HOH 5 405 160 HOH HOH A . C 3 HOH 6 406 121 HOH HOH A . C 3 HOH 7 407 139 HOH HOH A . C 3 HOH 8 408 131 HOH HOH A . C 3 HOH 9 409 151 HOH HOH A . C 3 HOH 10 410 153 HOH HOH A . C 3 HOH 11 411 134 HOH HOH A . C 3 HOH 12 412 116 HOH HOH A . C 3 HOH 13 413 142 HOH HOH A . C 3 HOH 14 414 147 HOH HOH A . C 3 HOH 15 415 132 HOH HOH A . C 3 HOH 16 416 135 HOH HOH A . C 3 HOH 17 417 124 HOH HOH A . C 3 HOH 18 418 120 HOH HOH A . C 3 HOH 19 419 156 HOH HOH A . C 3 HOH 20 420 138 HOH HOH A . C 3 HOH 21 421 115 HOH HOH A . C 3 HOH 22 422 148 HOH HOH A . C 3 HOH 23 423 114 HOH HOH A . C 3 HOH 24 424 118 HOH HOH A . C 3 HOH 25 425 103 HOH HOH A . C 3 HOH 26 426 136 HOH HOH A . C 3 HOH 27 427 111 HOH HOH A . C 3 HOH 28 428 161 HOH HOH A . C 3 HOH 29 429 125 HOH HOH A . C 3 HOH 30 430 105 HOH HOH A . C 3 HOH 31 431 127 HOH HOH A . C 3 HOH 32 432 141 HOH HOH A . C 3 HOH 33 433 108 HOH HOH A . C 3 HOH 34 434 106 HOH HOH A . C 3 HOH 35 435 102 HOH HOH A . C 3 HOH 36 436 164 HOH HOH A . C 3 HOH 37 437 110 HOH HOH A . C 3 HOH 38 438 128 HOH HOH A . C 3 HOH 39 439 157 HOH HOH A . C 3 HOH 40 440 104 HOH HOH A . C 3 HOH 41 441 129 HOH HOH A . C 3 HOH 42 442 159 HOH HOH A . C 3 HOH 43 443 126 HOH HOH A . C 3 HOH 44 444 122 HOH HOH A . C 3 HOH 45 445 109 HOH HOH A . C 3 HOH 46 446 123 HOH HOH A . C 3 HOH 47 447 146 HOH HOH A . C 3 HOH 48 448 101 HOH HOH A . C 3 HOH 49 449 162 HOH HOH A . C 3 HOH 50 450 113 HOH HOH A . C 3 HOH 51 451 154 HOH HOH A . C 3 HOH 52 452 144 HOH HOH A . C 3 HOH 53 453 112 HOH HOH A . C 3 HOH 54 454 133 HOH HOH A . C 3 HOH 55 455 107 HOH HOH A . C 3 HOH 56 456 137 HOH HOH A . C 3 HOH 57 457 173 HOH HOH A . C 3 HOH 58 458 167 HOH HOH A . C 3 HOH 59 459 140 HOH HOH A . C 3 HOH 60 460 152 HOH HOH A . C 3 HOH 61 461 117 HOH HOH A . C 3 HOH 62 462 166 HOH HOH A . C 3 HOH 63 463 155 HOH HOH A . C 3 HOH 64 464 163 HOH HOH A . C 3 HOH 65 465 171 HOH HOH A . C 3 HOH 66 466 130 HOH HOH A . C 3 HOH 67 467 158 HOH HOH A . C 3 HOH 68 468 149 HOH HOH A . C 3 HOH 69 469 145 HOH HOH A . C 3 HOH 70 470 169 HOH HOH A . C 3 HOH 71 471 168 HOH HOH A . C 3 HOH 72 472 172 HOH HOH A . C 3 HOH 73 473 165 HOH HOH A . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XSCALE ? ? ? . 1 ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.8.3_1479 2 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.24 3 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 5Z1I _cell.details ? _cell.formula_units_Z ? _cell.length_a 46.171 _cell.length_a_esd ? _cell.length_b 46.171 _cell.length_b_esd ? _cell.length_c 115.294 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 16 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 5Z1I _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 2 2' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5Z1I _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.27 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 45.76 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '2-Methyl-2,4-pentanediol, LiCl, spermine tetrahydrochloride, sodium cacodylate' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'ADSC QUANTUM 270' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2016-03-06 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.98 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'PHOTON FACTORY BEAMLINE BL-17A' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.98 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL-17A _diffrn_source.pdbx_synchrotron_site 'Photon Factory' # _reflns.B_iso_Wilson_estimate 20.850 _reflns.entry_id 5Z1I _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.900 _reflns.d_resolution_low 42.862 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 5236 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.800 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 11.955 _reflns.pdbx_Rmerge_I_obs 0.072 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 23.850 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared 1.044 _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.075 _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.999 _reflns.pdbx_R_split ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_all _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_R_split 1.900 1.950 ? 7.860 ? ? ? ? 374 99.200 ? ? ? ? 0.275 ? ? ? ? ? ? ? ? 11.481 ? ? ? ? 0.288 ? ? 1 1 0.987 ? 1.950 2.010 ? 8.930 ? ? ? ? 371 100.000 ? ? ? ? 0.282 ? ? ? ? ? ? ? ? 12.350 ? ? ? ? 0.294 ? ? 2 1 0.981 ? 2.010 2.060 ? 10.290 ? ? ? ? 350 100.000 ? ? ? ? 0.231 ? ? ? ? ? ? ? ? 12.217 ? ? ? ? 0.241 ? ? 3 1 0.992 ? 2.060 2.130 ? 13.480 ? ? ? ? 334 100.000 ? ? ? ? 0.186 ? ? ? ? ? ? ? ? 12.629 ? ? ? ? 0.194 ? ? 4 1 0.993 ? 2.130 2.200 ? 14.130 ? ? ? ? 348 100.000 ? ? ? ? 0.173 ? ? ? ? ? ? ? ? 12.784 ? ? ? ? 0.180 ? ? 5 1 0.995 ? 2.200 2.270 ? 14.780 ? ? ? ? 317 100.000 ? ? ? ? 0.169 ? ? ? ? ? ? ? ? 12.830 ? ? ? ? 0.176 ? ? 6 1 0.996 ? 2.270 2.360 ? 17.670 ? ? ? ? 316 100.000 ? ? ? ? 0.145 ? ? ? ? ? ? ? ? 12.541 ? ? ? ? 0.151 ? ? 7 1 0.996 ? 2.360 2.460 ? 20.420 ? ? ? ? 309 100.000 ? ? ? ? 0.116 ? ? ? ? ? ? ? ? 12.055 ? ? ? ? 0.121 ? ? 8 1 0.996 ? 2.460 2.570 ? 20.990 ? ? ? ? 299 100.000 ? ? ? ? 0.114 ? ? ? ? ? ? ? ? 12.140 ? ? ? ? 0.119 ? ? 9 1 0.997 ? 2.570 2.690 ? 24.780 ? ? ? ? 272 100.000 ? ? ? ? 0.101 ? ? ? ? ? ? ? ? 12.099 ? ? ? ? 0.106 ? ? 10 1 0.997 ? 2.690 2.840 ? 28.480 ? ? ? ? 275 100.000 ? ? ? ? 0.089 ? ? ? ? ? ? ? ? 12.578 ? ? ? ? 0.093 ? ? 11 1 0.995 ? 2.840 3.010 ? 32.600 ? ? ? ? 253 99.600 ? ? ? ? 0.075 ? ? ? ? ? ? ? ? 12.348 ? ? ? ? 0.078 ? ? 12 1 0.998 ? 3.010 3.220 ? 38.860 ? ? ? ? 238 99.600 ? ? ? ? 0.060 ? ? ? ? ? ? ? ? 11.769 ? ? ? ? 0.063 ? ? 13 1 0.999 ? 3.220 3.470 ? 39.950 ? ? ? ? 229 98.700 ? ? ? ? 0.055 ? ? ? ? ? ? ? ? 10.760 ? ? ? ? 0.058 ? ? 14 1 0.999 ? 3.470 3.810 ? 41.330 ? ? ? ? 207 99.500 ? ? ? ? 0.051 ? ? ? ? ? ? ? ? 10.855 ? ? ? ? 0.054 ? ? 15 1 0.999 ? 3.810 4.260 ? 44.640 ? ? ? ? 196 99.500 ? ? ? ? 0.045 ? ? ? ? ? ? ? ? 10.832 ? ? ? ? 0.047 ? ? 16 1 0.999 ? 4.260 4.910 ? 46.840 ? ? ? ? 174 99.400 ? ? ? ? 0.042 ? ? ? ? ? ? ? ? 11.603 ? ? ? ? 0.044 ? ? 17 1 0.999 ? 4.910 6.020 ? 43.290 ? ? ? ? 155 100.000 ? ? ? ? 0.038 ? ? ? ? ? ? ? ? 10.961 ? ? ? ? 0.040 ? ? 18 1 0.999 ? 6.020 8.510 ? 43.200 ? ? ? ? 123 100.000 ? ? ? ? 0.033 ? ? ? ? ? ? ? ? 9.959 ? ? ? ? 0.035 ? ? 19 1 0.999 ? 8.510 42.862 ? 45.260 ? ? ? ? 82 97.600 ? ? ? ? 0.030 ? ? ? ? ? ? ? ? 9.427 ? ? ? ? 0.032 ? ? 20 1 0.999 ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max 198.250 _refine.B_iso_mean 25.4800 _refine.B_iso_min 12.500 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 5Z1I _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.9030 _refine.ls_d_res_low 42.8620 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 5223 _refine.ls_number_reflns_R_free 544 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.7500 _refine.ls_percent_reflns_R_free 10.5900 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_free 0.224 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.196 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.350 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct ? _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 19.8200 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.1500 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.cycle_id final _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.d_res_high 1.9030 _refine_hist.d_res_low 42.8620 _refine_hist.pdbx_number_atoms_ligand 31 _refine_hist.number_atoms_solvent 73 _refine_hist.number_atoms_total 555 _refine_hist.pdbx_number_residues_total 21 _refine_hist.pdbx_B_iso_mean_ligand 20.09 _refine_hist.pdbx_B_iso_mean_solvent 32.42 _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 451 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.006 ? 536 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.020 ? 832 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.105 ? 116 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.014 ? 21 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 11.877 ? 251 ? f_dihedral_angle_d ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 1.9032 2.0035 1327 . 138 1189 99.0000 . . . 0.2606 0.0000 0.2275 . . . . . . 7 . . . 'X-RAY DIFFRACTION' 2.0035 2.1290 1317 . 159 1158 100.0000 . . . 0.2340 0.0000 0.2121 . . . . . . 7 . . . 'X-RAY DIFFRACTION' 2.1290 2.2934 1340 . 126 1214 100.0000 . . . 0.2093 0.0000 0.2096 . . . . . . 7 . . . 'X-RAY DIFFRACTION' 2.2934 2.5242 1349 . 160 1189 100.0000 . . . 0.2430 0.0000 0.2097 . . . . . . 7 . . . 'X-RAY DIFFRACTION' 2.5242 2.8894 1344 . 140 1204 100.0000 . . . 0.2674 0.0000 0.2351 . . . . . . 7 . . . 'X-RAY DIFFRACTION' 2.8894 3.6400 1318 . 142 1176 99.0000 . . . 0.1879 0.0000 0.1971 . . . . . . 7 . . . 'X-RAY DIFFRACTION' 3.6400 42.8727 1348 . 124 1224 100.0000 . . . 0.1652 0.0000 0.1433 . . . . . . 7 . . . # _struct.entry_id 5Z1I _struct.title ;Crystal structure of the protozoal cytoplasmic ribosomal decoding site in complex with 6'-fluoro sisomicin ; _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5Z1I _struct_keywords.text 'rRNA, aminoglycoside, RNA' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 5Z1I _struct_ref.pdbx_db_accession 5Z1I _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 5Z1I _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 21 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 5Z1I _struct_ref_seq.db_align_beg 3 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 23 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 3 _struct_ref_seq.pdbx_auth_seq_align_end 23 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2530 ? 1 MORE -19 ? 1 'SSA (A^2)' 8100 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 8_555 -y,-x,-z 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 A C 21 N3 ? ? A G 3 A C 23 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 A C 21 O2 ? ? A G 3 A C 23 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 A C 21 N4 ? ? A G 3 A C 23 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A C 2 N3 ? ? ? 1_555 A G 20 N1 ? ? A C 4 A G 22 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A C 2 N4 ? ? ? 1_555 A G 20 O6 ? ? A C 4 A G 22 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A C 2 O2 ? ? ? 1_555 A G 20 N2 ? ? A C 4 A G 22 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A G 3 N1 ? ? ? 1_555 A C 19 N3 ? ? A G 5 A C 21 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A G 3 N2 ? ? ? 1_555 A C 19 O2 ? ? A G 5 A C 21 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 3 O6 ? ? ? 1_555 A C 19 N4 ? ? A G 5 A C 21 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A U 4 N3 ? ? ? 1_555 A U 18 O2 ? ? A U 6 A U 20 8_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog11 hydrog ? ? A U 4 O4 ? ? ? 1_555 A U 18 N3 ? ? A U 6 A U 20 8_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog12 hydrog ? ? A C 5 N3 ? ? ? 1_555 A G 17 N1 ? ? A C 7 A G 19 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A C 5 N4 ? ? ? 1_555 A G 17 O6 ? ? A C 7 A G 19 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A C 5 O2 ? ? ? 1_555 A G 17 N2 ? ? A C 7 A G 19 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A C 7 N3 ? ? ? 1_555 A G 14 N1 ? ? A C 9 A G 16 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A C 7 N4 ? ? ? 1_555 A G 14 O6 ? ? A C 9 A G 16 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A C 7 O2 ? ? ? 1_555 A G 14 N2 ? ? A C 9 A G 16 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A G 8 N1 ? ? ? 1_555 A C 13 N3 ? ? A G 10 A C 15 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A G 8 N2 ? ? ? 1_555 A C 13 O2 ? ? A G 10 A C 15 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A G 8 O6 ? ? ? 1_555 A C 13 N4 ? ? A G 10 A C 15 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A C 9 N3 ? ? ? 1_555 A G 12 N1 ? ? A C 11 A G 14 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A C 9 N4 ? ? ? 1_555 A G 12 O6 ? ? A C 11 A G 14 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A C 9 O2 ? ? ? 1_555 A G 12 N2 ? ? A C 11 A G 14 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A C 10 N3 ? ? ? 1_555 A G 11 N1 ? ? A C 12 A G 13 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A C 10 N4 ? ? ? 1_555 A G 11 O6 ? ? A C 12 A G 13 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A C 10 O2 ? ? ? 1_555 A G 11 N2 ? ? A C 12 A G 13 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A G 11 N1 ? ? ? 1_555 A C 10 N3 ? ? A G 13 A C 12 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A G 11 N2 ? ? ? 1_555 A C 10 O2 ? ? A G 13 A C 12 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A G 11 O6 ? ? ? 1_555 A C 10 N4 ? ? A G 13 A C 12 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A G 12 N1 ? ? ? 1_555 A C 9 N3 ? ? A G 14 A C 11 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A G 12 N2 ? ? ? 1_555 A C 9 O2 ? ? A G 14 A C 11 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A G 12 O6 ? ? ? 1_555 A C 9 N4 ? ? A G 14 A C 11 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A C 13 N3 ? ? ? 1_555 A G 8 N1 ? ? A C 15 A G 10 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A C 13 N4 ? ? ? 1_555 A G 8 O6 ? ? A C 15 A G 10 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A C 13 O2 ? ? ? 1_555 A G 8 N2 ? ? A C 15 A G 10 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A G 14 N1 ? ? ? 1_555 A C 7 N3 ? ? A G 16 A C 9 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A G 14 N2 ? ? ? 1_555 A C 7 O2 ? ? A G 16 A C 9 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A G 14 O6 ? ? ? 1_555 A C 7 N4 ? ? A G 16 A C 9 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A G 17 N1 ? ? ? 1_555 A C 5 N3 ? ? A G 19 A C 7 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A G 17 N2 ? ? ? 1_555 A C 5 O2 ? ? A G 19 A C 7 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A G 17 O6 ? ? ? 1_555 A C 5 N4 ? ? A G 19 A C 7 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A U 18 N3 ? ? ? 1_555 A U 4 O4 ? ? A U 20 A U 6 8_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog43 hydrog ? ? A U 18 O2 ? ? ? 1_555 A U 4 N3 ? ? A U 20 A U 6 8_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog44 hydrog ? ? A C 19 N3 ? ? ? 1_555 A G 3 N1 ? ? A C 21 A G 5 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A C 19 N4 ? ? ? 1_555 A G 3 O6 ? ? A C 21 A G 5 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A C 19 O2 ? ? ? 1_555 A G 3 N2 ? ? A C 21 A G 5 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A G 20 N1 ? ? ? 1_555 A C 2 N3 ? ? A G 22 A C 4 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A G 20 N2 ? ? ? 1_555 A C 2 O2 ? ? A G 22 A C 4 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A G 20 O6 ? ? ? 1_555 A C 2 N4 ? ? A G 22 A C 4 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A C 21 N3 ? ? ? 1_555 A G 1 N1 ? ? A C 23 A G 3 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? A C 21 N4 ? ? ? 1_555 A G 1 O6 ? ? A C 23 A G 3 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A C 21 O2 ? ? ? 1_555 A G 1 N2 ? ? A C 23 A G 3 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id FSJ _struct_site.pdbx_auth_seq_id 301 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 18 _struct_site.details 'binding site for residue FSJ A 301' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 18 C A 2 ? C A 4 . ? 1_555 ? 2 AC1 18 G A 3 ? G A 5 . ? 1_555 ? 3 AC1 18 U A 4 ? U A 6 . ? 1_555 ? 4 AC1 18 C A 5 ? C A 7 . ? 1_555 ? 5 AC1 18 G A 6 ? G A 8 . ? 1_555 ? 6 AC1 18 C A 7 ? C A 9 . ? 1_555 ? 7 AC1 18 G A 14 ? G A 16 . ? 8_555 ? 8 AC1 18 G A 17 ? G A 19 . ? 8_555 ? 9 AC1 18 U A 18 ? U A 20 . ? 8_555 ? 10 AC1 18 HOH C . ? HOH A 403 . ? 1_555 ? 11 AC1 18 HOH C . ? HOH A 408 . ? 1_555 ? 12 AC1 18 HOH C . ? HOH A 410 . ? 1_555 ? 13 AC1 18 HOH C . ? HOH A 425 . ? 8_555 ? 14 AC1 18 HOH C . ? HOH A 433 . ? 1_555 ? 15 AC1 18 HOH C . ? HOH A 437 . ? 1_555 ? 16 AC1 18 HOH C . ? HOH A 462 . ? 8_555 ? 17 AC1 18 HOH C . ? HOH A 463 . ? 1_555 ? 18 AC1 18 HOH C . ? HOH A 464 . ? 1_555 ? # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 457 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id C _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 FSJ C11 C N S 73 FSJ C12 C N R 74 FSJ C13 C N R 75 FSJ C21 C N R 76 FSJ C22 C N N 77 FSJ C23 C N R 78 FSJ C31 C N N 79 FSJ C32 C N S 80 FSJ C33 C N R 81 FSJ C41 C N N 82 FSJ C42 C N R 83 FSJ C43 C N R 84 FSJ C51 C N N 85 FSJ C52 C N S 86 FSJ C53 C N N 87 FSJ C61 C N N 88 FSJ C62 C N S 89 FSJ C83 C N N 90 FSJ C93 C N N 91 FSJ N12 N N N 92 FSJ N21 N N N 93 FSJ N32 N N N 94 FSJ N33 N N N 95 FSJ F61 F N N 96 FSJ O11 O N N 97 FSJ O23 O N N 98 FSJ O43 O N N 99 FSJ O51 O N N 100 FSJ O52 O N N 101 FSJ O53 O N N 102 FSJ O62 O N N 103 FSJ H1 H N N 104 FSJ H2 H N N 105 FSJ H3 H N N 106 FSJ H4 H N N 107 FSJ H5 H N N 108 FSJ H6 H N N 109 FSJ H7 H N N 110 FSJ H8 H N N 111 FSJ H9 H N N 112 FSJ H10 H N N 113 FSJ H11 H N N 114 FSJ H12 H N N 115 FSJ H13 H N N 116 FSJ H14 H N N 117 FSJ H15 H N N 118 FSJ H16 H N N 119 FSJ H17 H N N 120 FSJ H18 H N N 121 FSJ H19 H N N 122 FSJ H20 H N N 123 FSJ H21 H N N 124 FSJ H22 H N N 125 FSJ H23 H N N 126 FSJ H24 H N N 127 FSJ H25 H N N 128 FSJ H26 H N N 129 FSJ H27 H N N 130 FSJ H29 H N N 131 FSJ H30 H N N 132 FSJ H32 H N N 133 FSJ H33 H N N 134 FSJ H35 H N N 135 FSJ H37 H N N 136 FSJ H38 H N N 137 FSJ H39 H N N 138 G OP3 O N N 139 G P P N N 140 G OP1 O N N 141 G OP2 O N N 142 G "O5'" O N N 143 G "C5'" C N N 144 G "C4'" C N R 145 G "O4'" O N N 146 G "C3'" C N S 147 G "O3'" O N N 148 G "C2'" C N R 149 G "O2'" O N N 150 G "C1'" C N R 151 G N9 N Y N 152 G C8 C Y N 153 G N7 N Y N 154 G C5 C Y N 155 G C6 C N N 156 G O6 O N N 157 G N1 N N N 158 G C2 C N N 159 G N2 N N N 160 G N3 N N N 161 G C4 C Y N 162 G HOP3 H N N 163 G HOP2 H N N 164 G "H5'" H N N 165 G "H5''" H N N 166 G "H4'" H N N 167 G "H3'" H N N 168 G "HO3'" H N N 169 G "H2'" H N N 170 G "HO2'" H N N 171 G "H1'" H N N 172 G H8 H N N 173 G H1 H N N 174 G H21 H N N 175 G H22 H N N 176 HOH O O N N 177 HOH H1 H N N 178 HOH H2 H N N 179 U OP3 O N N 180 U P P N N 181 U OP1 O N N 182 U OP2 O N N 183 U "O5'" O N N 184 U "C5'" C N N 185 U "C4'" C N R 186 U "O4'" O N N 187 U "C3'" C N S 188 U "O3'" O N N 189 U "C2'" C N R 190 U "O2'" O N N 191 U "C1'" C N R 192 U N1 N N N 193 U C2 C N N 194 U O2 O N N 195 U N3 N N N 196 U C4 C N N 197 U O4 O N N 198 U C5 C N N 199 U C6 C N N 200 U HOP3 H N N 201 U HOP2 H N N 202 U "H5'" H N N 203 U "H5''" H N N 204 U "H4'" H N N 205 U "H3'" H N N 206 U "HO3'" H N N 207 U "H2'" H N N 208 U "HO2'" H N N 209 U "H1'" H N N 210 U H3 H N N 211 U H5 H N N 212 U H6 H N N 213 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 FSJ C93 N33 sing N N 76 FSJ N33 C33 sing N N 77 FSJ O23 C23 sing N N 78 FSJ C33 C23 sing N N 79 FSJ C33 C43 sing N N 80 FSJ C23 C13 sing N N 81 FSJ C83 C43 sing N N 82 FSJ O43 C43 sing N N 83 FSJ C43 C53 sing N N 84 FSJ N12 C12 sing N N 85 FSJ O62 C13 sing N N 86 FSJ O62 C62 sing N N 87 FSJ C13 O53 sing N N 88 FSJ C12 C62 sing N N 89 FSJ C12 C22 sing N N 90 FSJ C53 O53 sing N N 91 FSJ C62 C52 sing N N 92 FSJ C22 C32 sing N N 93 FSJ C52 O52 sing N N 94 FSJ C52 C42 sing N N 95 FSJ C32 C42 sing N N 96 FSJ C32 N32 sing N N 97 FSJ C42 O11 sing N N 98 FSJ N21 C21 sing N N 99 FSJ O11 C11 sing N N 100 FSJ C21 C31 sing N N 101 FSJ C21 C11 sing N N 102 FSJ C31 C41 sing N N 103 FSJ C11 O51 sing N N 104 FSJ C41 C51 doub N N 105 FSJ O51 C51 sing N N 106 FSJ C51 C61 sing N N 107 FSJ C61 F61 sing N N 108 FSJ C11 H1 sing N N 109 FSJ C12 H2 sing N N 110 FSJ C13 H3 sing N N 111 FSJ C21 H4 sing N N 112 FSJ C22 H5 sing N N 113 FSJ C22 H6 sing N N 114 FSJ C23 H7 sing N N 115 FSJ C31 H8 sing N N 116 FSJ C31 H9 sing N N 117 FSJ C32 H10 sing N N 118 FSJ C33 H11 sing N N 119 FSJ C41 H12 sing N N 120 FSJ C42 H13 sing N N 121 FSJ C52 H14 sing N N 122 FSJ C53 H15 sing N N 123 FSJ C53 H16 sing N N 124 FSJ C61 H17 sing N N 125 FSJ C61 H18 sing N N 126 FSJ C62 H19 sing N N 127 FSJ C83 H20 sing N N 128 FSJ C83 H21 sing N N 129 FSJ C83 H22 sing N N 130 FSJ C93 H23 sing N N 131 FSJ C93 H24 sing N N 132 FSJ C93 H25 sing N N 133 FSJ N12 H26 sing N N 134 FSJ N12 H27 sing N N 135 FSJ N21 H29 sing N N 136 FSJ N21 H30 sing N N 137 FSJ N32 H32 sing N N 138 FSJ N32 H33 sing N N 139 FSJ N33 H35 sing N N 140 FSJ O23 H37 sing N N 141 FSJ O43 H38 sing N N 142 FSJ O52 H39 sing N N 143 G OP3 P sing N N 144 G OP3 HOP3 sing N N 145 G P OP1 doub N N 146 G P OP2 sing N N 147 G P "O5'" sing N N 148 G OP2 HOP2 sing N N 149 G "O5'" "C5'" sing N N 150 G "C5'" "C4'" sing N N 151 G "C5'" "H5'" sing N N 152 G "C5'" "H5''" sing N N 153 G "C4'" "O4'" sing N N 154 G "C4'" "C3'" sing N N 155 G "C4'" "H4'" sing N N 156 G "O4'" "C1'" sing N N 157 G "C3'" "O3'" sing N N 158 G "C3'" "C2'" sing N N 159 G "C3'" "H3'" sing N N 160 G "O3'" "HO3'" sing N N 161 G "C2'" "O2'" sing N N 162 G "C2'" "C1'" sing N N 163 G "C2'" "H2'" sing N N 164 G "O2'" "HO2'" sing N N 165 G "C1'" N9 sing N N 166 G "C1'" "H1'" sing N N 167 G N9 C8 sing Y N 168 G N9 C4 sing Y N 169 G C8 N7 doub Y N 170 G C8 H8 sing N N 171 G N7 C5 sing Y N 172 G C5 C6 sing N N 173 G C5 C4 doub Y N 174 G C6 O6 doub N N 175 G C6 N1 sing N N 176 G N1 C2 sing N N 177 G N1 H1 sing N N 178 G C2 N2 sing N N 179 G C2 N3 doub N N 180 G N2 H21 sing N N 181 G N2 H22 sing N N 182 G N3 C4 sing N N 183 HOH O H1 sing N N 184 HOH O H2 sing N N 185 U OP3 P sing N N 186 U OP3 HOP3 sing N N 187 U P OP1 doub N N 188 U P OP2 sing N N 189 U P "O5'" sing N N 190 U OP2 HOP2 sing N N 191 U "O5'" "C5'" sing N N 192 U "C5'" "C4'" sing N N 193 U "C5'" "H5'" sing N N 194 U "C5'" "H5''" sing N N 195 U "C4'" "O4'" sing N N 196 U "C4'" "C3'" sing N N 197 U "C4'" "H4'" sing N N 198 U "O4'" "C1'" sing N N 199 U "C3'" "O3'" sing N N 200 U "C3'" "C2'" sing N N 201 U "C3'" "H3'" sing N N 202 U "O3'" "HO3'" sing N N 203 U "C2'" "O2'" sing N N 204 U "C2'" "C1'" sing N N 205 U "C2'" "H2'" sing N N 206 U "O2'" "HO2'" sing N N 207 U "C1'" N1 sing N N 208 U "C1'" "H1'" sing N N 209 U N1 C2 sing N N 210 U N1 C6 sing N N 211 U C2 O2 doub N N 212 U C2 N3 sing N N 213 U N3 C4 sing N N 214 U N3 H3 sing N N 215 U C4 O4 doub N N 216 U C4 C5 sing N N 217 U C5 C6 doub N N 218 U C5 H5 sing N N 219 U C6 H6 sing N N 220 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 5Z1I 'double helix' 5Z1I 'a-form double helix' 5Z1I 'mismatched base pair' 5Z1I 'internal loop' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 A C 21 8_555 -0.484 -0.153 -0.211 -5.928 -4.745 -0.819 1 A_G3:C23_A A 3 ? A 23 ? 19 1 1 A C 2 1_555 A G 20 8_555 0.248 -0.190 0.059 2.351 -5.751 -1.315 2 A_C4:G22_A A 4 ? A 22 ? 19 1 1 A G 3 1_555 A C 19 8_555 -0.093 -0.152 -0.571 -1.134 -5.286 1.825 3 A_G5:C21_A A 5 ? A 21 ? 19 1 1 A U 4 1_555 A U 18 8_555 -2.253 -1.673 -0.315 21.259 -4.130 -4.914 4 A_U6:U20_A A 6 ? A 20 ? 16 1 1 A C 5 1_555 A G 17 8_555 0.187 -0.197 -0.781 10.968 -4.904 0.312 5 A_C7:G19_A A 7 ? A 19 ? 19 1 1 A G 1 8_555 A C 21 1_555 -0.484 -0.153 -0.211 -5.928 -4.745 -0.819 6 A_G3:C23_A A 3 ? A 23 ? 19 1 1 A C 2 8_555 A G 20 1_555 0.248 -0.190 0.059 2.351 -5.751 -1.315 7 A_C4:G22_A A 4 ? A 22 ? 19 1 1 A G 3 8_555 A C 19 1_555 -0.093 -0.152 -0.571 -1.134 -5.286 1.825 8 A_G5:C21_A A 5 ? A 21 ? 19 1 1 A U 4 8_555 A U 18 1_555 -2.253 -1.673 -0.315 21.259 -4.130 -4.914 9 A_U6:U20_A A 6 ? A 20 ? 16 1 1 A C 5 8_555 A G 17 1_555 0.187 -0.197 -0.781 10.968 -4.904 0.312 10 A_C7:G19_A A 7 ? A 19 ? 19 1 1 A C 7 1_555 A G 14 8_555 0.169 -0.254 -0.336 -0.887 -1.406 -0.436 11 A_C9:G16_A A 9 ? A 16 ? 19 1 1 A G 8 1_555 A C 13 8_555 -0.485 -0.233 0.016 -5.586 -16.284 3.291 12 A_G10:C15_A A 10 ? A 15 ? 19 1 1 A C 9 1_555 A G 12 8_555 0.267 -0.309 0.089 -3.030 -12.474 -0.687 13 A_C11:G14_A A 11 ? A 14 ? 19 1 1 A C 10 1_555 A G 11 8_555 -0.017 0.018 0.041 -1.299 -12.356 2.144 14 A_C12:G13_A A 12 ? A 13 ? 19 1 1 A G 11 1_555 A C 10 8_555 0.017 0.018 0.041 1.299 -12.356 2.144 15 A_G13:C12_A A 13 ? A 12 ? 19 1 1 A G 12 1_555 A C 9 8_555 -0.267 -0.309 0.089 3.030 -12.474 -0.687 16 A_G14:C11_A A 14 ? A 11 ? 19 1 1 A C 13 1_555 A G 8 8_555 0.485 -0.233 0.016 5.586 -16.284 3.291 17 A_C15:G10_A A 15 ? A 10 ? 19 1 1 A G 14 1_555 A C 7 8_555 -0.169 -0.254 -0.336 0.887 -1.406 -0.436 18 A_G16:C9_A A 16 ? A 9 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 A C 21 8_555 A C 2 1_555 A G 20 8_555 -0.354 -1.384 3.176 -2.733 2.187 34.810 -2.620 0.192 3.104 3.644 4.555 34.980 1 AA_G3C4:G22C23_AA A 3 ? A 23 ? A 4 ? A 22 ? 1 A C 2 1_555 A G 20 8_555 A G 3 1_555 A C 19 8_555 0.109 -1.494 3.374 2.768 10.248 28.560 -4.810 0.323 2.688 19.925 -5.382 30.430 2 AA_C4G5:C21G22_AA A 4 ? A 22 ? A 5 ? A 21 ? 1 A G 3 1_555 A C 19 8_555 A U 4 1_555 A U 18 8_555 -0.348 -1.771 2.645 -6.359 2.968 22.822 -5.049 -0.800 2.405 7.282 15.603 23.863 3 AA_G5U6:U20C21_AA A 5 ? A 21 ? A 6 ? A 20 ? 1 A U 4 1_555 A U 18 8_555 A C 5 1_555 A G 17 8_555 0.584 -2.392 3.803 0.184 3.918 42.211 -3.760 -0.786 3.579 5.426 -0.255 42.385 4 AA_U6C7:G19U20_AA A 6 ? A 20 ? A 7 ? A 19 ? 1 A G 1 8_555 A C 21 1_555 A C 2 8_555 A G 20 1_555 -0.354 -1.384 3.176 -2.733 2.187 34.810 -2.620 0.192 3.104 3.644 4.555 34.980 5 AA_G3C4:G22C23_AA A 3 ? A 23 ? A 4 ? A 22 ? 1 A C 2 8_555 A G 20 1_555 A G 3 8_555 A C 19 1_555 0.109 -1.494 3.374 2.768 10.248 28.560 -4.810 0.323 2.688 19.925 -5.382 30.430 6 AA_C4G5:C21G22_AA A 4 ? A 22 ? A 5 ? A 21 ? 1 A G 3 8_555 A C 19 1_555 A U 4 8_555 A U 18 1_555 -0.348 -1.771 2.645 -6.359 2.968 22.822 -5.049 -0.800 2.405 7.282 15.603 23.863 7 AA_G5U6:U20C21_AA A 5 ? A 21 ? A 6 ? A 20 ? 1 A U 4 8_555 A U 18 1_555 A C 5 8_555 A G 17 1_555 0.584 -2.392 3.803 0.184 3.918 42.211 -3.760 -0.786 3.579 5.426 -0.255 42.385 8 AA_U6C7:G19U20_AA A 6 ? A 20 ? A 7 ? A 19 ? 1 A C 7 1_555 A G 14 8_555 A G 8 1_555 A C 13 8_555 0.031 -1.702 3.232 -1.490 16.641 25.827 -5.976 -0.306 1.821 33.176 2.970 30.682 9 AA_C9G10:C15G16_AA A 9 ? A 16 ? A 10 ? A 15 ? 1 A G 8 1_555 A C 13 8_555 A C 9 1_555 A G 12 8_555 -0.468 -1.286 3.159 -1.467 4.843 36.747 -2.634 0.551 2.987 7.638 2.314 37.082 10 AA_G10C11:G14C15_AA A 10 ? A 15 ? A 11 ? A 14 ? 1 A C 9 1_555 A G 12 8_555 A C 10 1_555 A G 11 8_555 0.404 -1.105 3.081 2.851 6.902 32.254 -3.005 -0.269 2.815 12.220 -5.048 33.085 11 AA_C11C12:G13G14_AA A 11 ? A 14 ? A 12 ? A 13 ? 1 A C 10 1_555 A G 11 8_555 A G 11 1_555 A C 10 8_555 0.000 -1.236 3.115 0.000 8.859 29.507 -3.886 0.000 2.641 16.919 0.000 30.780 12 AA_C12G13:C12G13_AA A 12 ? A 13 ? A 13 ? A 12 ? 1 A G 11 1_555 A C 10 8_555 A G 12 1_555 A C 9 8_555 -0.404 -1.105 3.081 -2.851 6.902 32.254 -3.005 0.269 2.815 12.220 5.048 33.085 13 AA_G13G14:C11C12_AA A 13 ? A 12 ? A 14 ? A 11 ? 1 A G 12 1_555 A C 9 8_555 A C 13 1_555 A G 8 8_555 0.468 -1.286 3.159 1.467 4.843 36.747 -2.634 -0.551 2.987 7.638 -2.314 37.082 14 AA_G14C15:G10C11_AA A 14 ? A 11 ? A 15 ? A 10 ? 1 A C 13 1_555 A G 8 8_555 A G 14 1_555 A C 7 8_555 -0.031 -1.702 3.232 1.490 16.641 25.827 -5.976 0.306 1.821 33.176 -2.970 30.682 15 AA_C15G16:C9G10_AA A 15 ? A 10 ? A 16 ? A 9 ? # _pdbx_audit_support.funding_organization 'Ministry of Education, Culture, Sports, Science and Technology (Japan)' _pdbx_audit_support.country Japan _pdbx_audit_support.grant_number 17K08248 _pdbx_audit_support.ordinal 1 # _atom_sites.entry_id 5Z1I _atom_sites.fract_transf_matrix[1][1] 0.021659 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.021659 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008673 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C F N O P # loop_