HEADER METAL BINDING PROTEIN 02-JAN-18 5Z2K TITLE STRUCTURE OF S38A MUTANT MN-BOUND PERIPLASMIC METAL BINDING PROTEIN TITLE 2 FROM CANDIDATUS LIBERIBACTER ASIATICUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PERIPLASMIC SOLUTE BINDING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LIBERIBACTER ASIATICUS (STRAIN PSY62); SOURCE 3 ORGANISM_TAXID: 537021; SOURCE 4 STRAIN: PSY62; SOURCE 5 GENE: CLIBASIA_02120; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 KEYWDS ABC TRANSPORTER, PERIPLASMIC SOLUTE BINDING PROTEIN, METAL BINDING KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR G.SAINI,N.SHARMA,V.DALAL,P.KUMAR,A.K.SHARMA REVDAT 3 22-NOV-23 5Z2K 1 COMPND REVDAT 2 10-OCT-18 5Z2K 1 COMPND JRNL REVDAT 1 03-OCT-18 5Z2K 0 JRNL AUTH G.SAINI,N.SHARMA,V.DALAL,A.WARGHANE,D.K.GHOSH,P.KUMAR, JRNL AUTH 2 A.K.SHARMA JRNL TITL THE ANALYSIS OF SUBTLE INTERNAL COMMUNICATIONS THROUGH JRNL TITL 2 MUTATION STUDIES IN PERIPLASMIC METAL UPTAKE PROTEIN JRNL TITL 3 CLAS-ZNUA2 JRNL REF J. STRUCT. BIOL. V. 204 228 2018 JRNL REFN ESSN 1095-8657 JRNL PMID 30125692 JRNL DOI 10.1016/J.JSB.2018.08.013 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0189 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 81.58 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 42404 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.146 REMARK 3 R VALUE (WORKING SET) : 0.145 REMARK 3 FREE R VALUE : 0.165 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2254 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.81 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2926 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.53 REMARK 3 BIN R VALUE (WORKING SET) : 0.2150 REMARK 3 BIN FREE R VALUE SET COUNT : 154 REMARK 3 BIN FREE R VALUE : 0.2530 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2135 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 72 REMARK 3 SOLVENT ATOMS : 376 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.14000 REMARK 3 B22 (A**2) : 0.14000 REMARK 3 B33 (A**2) : -0.45000 REMARK 3 B12 (A**2) : 0.07000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.079 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.077 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.050 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.100 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.962 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2387 ; 0.014 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2232 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3247 ; 1.571 ; 1.986 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5216 ; 0.991 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 305 ; 6.413 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 99 ;36.829 ;24.848 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 422 ;12.519 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;18.703 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 376 ; 0.105 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2650 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 453 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1164 ; 2.354 ; 1.385 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1156 ; 2.107 ; 1.353 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1467 ; 3.328 ; 2.016 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1468 ; 3.331 ; 2.020 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1221 ; 3.573 ; 1.785 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1222 ; 3.571 ; 1.788 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1774 ; 5.220 ; 2.517 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2915 ; 8.689 ;20.056 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2916 ; 8.701 ;20.071 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 4 A 275 REMARK 3 ORIGIN FOR THE GROUP (A): 29.3710 -27.2840 20.7870 REMARK 3 T TENSOR REMARK 3 T11: 0.0329 T22: 0.0185 REMARK 3 T33: 0.0193 T12: -0.0032 REMARK 3 T13: -0.0058 T23: 0.0031 REMARK 3 L TENSOR REMARK 3 L11: 0.9901 L22: 1.5574 REMARK 3 L33: 1.1421 L12: -0.2365 REMARK 3 L13: -0.2655 L23: 0.2546 REMARK 3 S TENSOR REMARK 3 S11: -0.0145 S12: 0.0578 S13: 0.0700 REMARK 3 S21: -0.0329 S22: -0.0171 S23: 0.0467 REMARK 3 S31: -0.1484 S32: -0.0171 S33: 0.0316 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.00 REMARK 3 ION PROBE RADIUS : 0.70 REMARK 3 SHRINKAGE RADIUS : 0.70 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5Z2K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 10-JAN-18. REMARK 100 THE DEPOSITION ID IS D_1300006363. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-JUL-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : BRUKER AXS MICROSTAR-H REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44692 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 81.580 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 5.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.89 REMARK 200 COMPLETENESS FOR SHELL (%) : 85.8 REMARK 200 DATA REDUNDANCY IN SHELL : 5.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 4UDO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.91 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SODIUM ACETATE TRIHYDRATE PH 4.6, REMARK 280 2M AMMONIUM SULPHATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 62.89333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 31.44667 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 31.44667 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 62.89333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5860 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23440 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -34.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 62.89333 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 1 REMARK 465 THR A 2 REMARK 465 GLN A 3 REMARK 465 SER A 98 REMARK 465 VAL A 99 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 106 44.06 -79.00 REMARK 500 SER A 110 136.17 -174.53 REMARK 500 VAL A 246 -32.80 -136.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 776 DISTANCE = 5.85 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 301 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 39 NE2 REMARK 620 2 HIS A 106 NE2 101.2 REMARK 620 3 GLU A 172 OE1 150.7 83.9 REMARK 620 4 GLU A 172 OE2 93.2 92.3 57.6 REMARK 620 5 ASP A 247 OD1 101.4 96.5 106.7 161.2 REMARK 620 6 ASP A 247 OD2 98.2 151.1 89.5 107.8 58.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 310 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 311 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 312 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 313 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 314 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 315 DBREF 5Z2K A 1 275 UNP C6XF58 C6XF58_LIBAP 20 294 SEQADV 5Z2K ALA A 38 UNP C6XF58 SER 57 ENGINEERED MUTATION SEQRES 1 A 275 THR THR GLN LYS LYS VAL VAL LEU SER SER PHE SER ILE SEQRES 2 A 275 ILE GLY ASP ILE THR GLN ASN ILE ALA LYS ASP LEU VAL SEQRES 3 A 275 THR VAL THR THR LEU VAL GLU ALA GLY ASN ASP ALA HIS SEQRES 4 A 275 SER TYR GLN VAL THR SER ALA ASP ALA ILE LYS ILE GLN SEQRES 5 A 275 ASN ALA ASP LEU ILE LEU CYS ASN GLY LEU HIS LEU GLU SEQRES 6 A 275 GLU THR TYR MET LYS TYR PHE THR ASN LEU LYS LYS GLY SEQRES 7 A 275 THR LYS ILE ILE THR VAL THR ASP GLY ILE ASN PRO ILE SEQRES 8 A 275 GLY VAL SER GLU ASP THR SER VAL ASP SER GLU PRO ASN SEQRES 9 A 275 PRO HIS ALA TRP MET SER LEU THR ASN ALA MET ILE TYR SEQRES 10 A 275 ILE GLU ASN ILE ARG LYS ALA LEU THR ALA LEU ASP PRO SEQRES 11 A 275 SER ASN ALA LYS LYS TYR GLU LEU ASN ALA ARG GLU TYR SEQRES 12 A 275 SER GLU LYS ILE ARG ASN SER ILE LEU PRO LEU LYS THR SEQRES 13 A 275 ARG ILE GLU LYS VAL ASP PRO GLU LYS ARG TRP PHE VAL SEQRES 14 A 275 THR SER GLU GLY CYS LEU VAL TYR LEU ALA GLU ASP PHE SEQRES 15 A 275 GLY PHE LYS SER LEU TYR LEU TRP PRO ILE ASN SER ASP SEQRES 16 A 275 SER GLU ARG SER PRO SER MET MET ARG HIS ALA ILE ASN SEQRES 17 A 275 GLN MET ARG SER HIS LYS ILE LYS PHE ILE PHE SER GLU SEQRES 18 A 275 SER THR ASN SER ASP GLN PRO ALA LYS GLN VAL ALA TYR SEQRES 19 A 275 GLU THR ASN ALA SER TYR GLY GLY VAL LEU TYR VAL ASP SEQRES 20 A 275 SER LEU SER LYS PRO ASP GLY PRO ALA PRO THR TYR LEU SEQRES 21 A 275 ASP LEU LEU ARG PHE SER LEU THR LYS ILE VAL ASP THR SEQRES 22 A 275 LEU PHE HET MN A 301 1 HET SO4 A 302 5 HET ACT A 303 4 HET ACT A 304 4 HET ACT A 305 4 HET ACT A 306 4 HET ACT A 307 4 HET ACT A 308 4 HET GOL A 309 6 HET GOL A 310 6 HET GOL A 311 6 HET GOL A 312 6 HET GOL A 313 6 HET GOL A 314 6 HET GOL A 315 6 HETNAM MN MANGANESE (II) ION HETNAM SO4 SULFATE ION HETNAM ACT ACETATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 MN MN 2+ FORMUL 3 SO4 O4 S 2- FORMUL 4 ACT 6(C2 H3 O2 1-) FORMUL 10 GOL 7(C3 H8 O3) FORMUL 17 HOH *376(H2 O) HELIX 1 AA1 SER A 12 LYS A 23 1 12 HELIX 2 AA2 THR A 44 ALA A 54 1 11 HELIX 3 AA3 TYR A 68 PHE A 72 5 5 HELIX 4 AA4 SER A 110 ASP A 129 1 20 HELIX 5 AA5 ASN A 132 GLU A 159 1 28 HELIX 6 AA6 LYS A 160 VAL A 161 5 2 HELIX 7 AA7 ASP A 162 LYS A 165 5 4 HELIX 8 AA8 LEU A 175 GLY A 183 1 9 HELIX 9 AA9 SER A 199 HIS A 213 1 15 HELIX 10 AB1 ASP A 226 ASN A 237 1 12 HELIX 11 AB2 THR A 258 PHE A 275 1 18 SHEET 1 AA1 4 THR A 27 VAL A 32 0 SHEET 2 AA1 4 VAL A 6 PHE A 11 1 N VAL A 7 O THR A 27 SHEET 3 AA1 4 LEU A 56 CYS A 59 1 O LEU A 58 N LEU A 8 SHEET 4 AA1 4 LYS A 80 THR A 83 1 O ILE A 82 N ILE A 57 SHEET 1 AA2 2 TRP A 167 GLU A 172 0 SHEET 2 AA2 2 LYS A 185 TRP A 190 1 O LYS A 185 N PHE A 168 SHEET 1 AA3 2 PHE A 217 GLU A 221 0 SHEET 2 AA3 2 SER A 239 LEU A 244 1 O GLY A 241 N ILE A 218 LINK NE2 HIS A 39 MN MN A 301 1555 1555 2.23 LINK NE2 HIS A 106 MN MN A 301 1555 1555 2.24 LINK OE1 GLU A 172 MN MN A 301 1555 1555 2.33 LINK OE2 GLU A 172 MN MN A 301 1555 1555 2.21 LINK OD1 ASP A 247 MN MN A 301 1555 1555 2.24 LINK OD2 ASP A 247 MN MN A 301 1555 1555 2.22 SITE 1 AC1 4 HIS A 39 HIS A 106 GLU A 172 ASP A 247 SITE 1 AC2 8 VAL A 28 THR A 29 THR A 30 GLU A 33 SITE 2 AC2 8 LYS A 50 HOH A 426 HOH A 467 HOH A 521 SITE 1 AC3 3 ARG A 204 ARG A 211 HOH A 462 SITE 1 AC4 3 ARG A 198 ASN A 224 SER A 225 SITE 1 AC5 5 GLN A 209 SER A 212 HIS A 213 HOH A 443 SITE 2 AC5 5 HOH A 479 SITE 1 AC6 3 SER A 150 ARG A 264 HOH A 566 SITE 1 AC7 2 ASN A 89 HOH A 586 SITE 1 AC8 3 ASN A 74 TYR A 245 PHE A 265 SITE 1 AC9 5 ARG A 122 LYS A 123 THR A 126 ARG A 141 SITE 2 AC9 5 HOH A 507 SITE 1 AD1 8 SER A 12 GLY A 15 ASP A 16 THR A 30 SITE 2 AD1 8 HOH A 419 HOH A 426 HOH A 467 HOH A 505 SITE 1 AD2 5 HIS A 205 ASN A 208 GLN A 209 HOH A 418 SITE 2 AD2 5 HOH A 549 SITE 1 AD3 4 GLN A 19 ASN A 20 HOH A 517 HOH A 558 SITE 1 AD4 6 SER A 199 PRO A 200 SER A 201 ARG A 204 SITE 2 AD4 6 ARG A 211 ASN A 237 SITE 1 AD5 6 THR A 44 ALA A 46 HOH A 415 HOH A 434 SITE 2 AD5 6 HOH A 447 HOH A 601 SITE 1 AD6 6 TYR A 245 SER A 250 LYS A 251 GLY A 254 SITE 2 AD6 6 HOH A 427 HOH A 579 CRYST1 94.190 94.190 94.340 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010617 0.006130 0.000000 0.00000 SCALE2 0.000000 0.012259 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010600 0.00000