HEADER HYDROLASE 08-JAN-18 5Z3J TITLE CRYSTAL STRUCTURE OF ABRIN A CHAIN (RECOMBINANT) IN COMPLEX WITH TITLE 2 NICOTINAMIDE AT 1.7 ANGSTROMS COMPND MOL_ID: 1; COMPND 2 MOLECULE: ABRIN A-CHAIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ABRUS PRECATORIUS; SOURCE 3 ORGANISM_COMMON: INDIAN LICORICE; SOURCE 4 ORGANISM_TAXID: 3816; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS RIBOSOME INACTIVATING PROTEIN, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR H.BANSIA,A.A.KARANDE,S.RAMAKUMAR REVDAT 3 22-NOV-23 5Z3J 1 REMARK REVDAT 2 20-MAR-19 5Z3J 1 JRNL REVDAT 1 02-JAN-19 5Z3J 0 JRNL AUTH H.BANSIA,S.BAGARIA,A.A.KARANDE,S.RAMAKUMAR JRNL TITL STRUCTURAL BASIS FOR NEUTRALIZATION OF CYTOTOXIC ABRIN BY JRNL TITL 2 MONOCLONAL ANTIBODY D6F10. JRNL REF FEBS J. V. 286 1003 2019 JRNL REFN ISSN 1742-4658 JRNL PMID 30521151 JRNL DOI 10.1111/FEBS.14716 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.12_2829 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 23.66 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 89.9 REMARK 3 NUMBER OF REFLECTIONS : 25908 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.870 REMARK 3 FREE R VALUE TEST SET COUNT : 1261 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 23.6582 - 3.5327 0.95 3071 142 0.1658 0.1650 REMARK 3 2 3.5327 - 2.8055 0.96 2982 153 0.1766 0.2159 REMARK 3 3 2.8055 - 2.4512 0.94 2869 154 0.1822 0.2023 REMARK 3 4 2.4512 - 2.2273 0.87 2634 152 0.2364 0.3016 REMARK 3 5 2.2273 - 2.0678 0.88 2644 138 0.1983 0.2237 REMARK 3 6 2.0678 - 1.9459 0.86 2576 141 0.2043 0.2095 REMARK 3 7 1.9459 - 1.8485 0.62 1861 85 0.3261 0.3643 REMARK 3 8 1.8485 - 1.7681 1.00 2987 153 0.2890 0.3141 REMARK 3 9 1.7681 - 1.7000 1.00 3023 143 0.3094 0.3111 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.620 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.25 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.25 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 1950 REMARK 3 ANGLE : 0.536 2658 REMARK 3 CHIRALITY : 0.043 305 REMARK 3 PLANARITY : 0.003 350 REMARK 3 DIHEDRAL : 13.127 1165 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 4 THROUGH 33 ) REMARK 3 ORIGIN FOR THE GROUP (A): -39.0360 77.8901 22.0332 REMARK 3 T TENSOR REMARK 3 T11: 0.1695 T22: 0.1206 REMARK 3 T33: 0.1466 T12: -0.0127 REMARK 3 T13: -0.0289 T23: 0.0259 REMARK 3 L TENSOR REMARK 3 L11: 5.6083 L22: 3.7379 REMARK 3 L33: 5.0988 L12: 0.9867 REMARK 3 L13: 3.3219 L23: -0.1647 REMARK 3 S TENSOR REMARK 3 S11: 0.1775 S12: -0.3050 S13: -0.3459 REMARK 3 S21: 0.4012 S22: -0.0616 S23: -0.2786 REMARK 3 S31: 0.1137 S32: -0.0806 S33: -0.1193 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 34 THROUGH 50 ) REMARK 3 ORIGIN FOR THE GROUP (A): -54.9072 83.9472 14.8592 REMARK 3 T TENSOR REMARK 3 T11: 0.1252 T22: 0.2341 REMARK 3 T33: 0.2346 T12: -0.0284 REMARK 3 T13: 0.0353 T23: 0.0776 REMARK 3 L TENSOR REMARK 3 L11: 4.2343 L22: 6.4726 REMARK 3 L33: 2.3637 L12: 2.0988 REMARK 3 L13: 2.5160 L23: 0.3668 REMARK 3 S TENSOR REMARK 3 S11: -0.0764 S12: -0.2263 S13: 0.4653 REMARK 3 S21: 0.1226 S22: 0.1369 S23: 0.9016 REMARK 3 S31: 0.0670 S32: -0.2806 S33: -0.0342 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 51 THROUGH 80 ) REMARK 3 ORIGIN FOR THE GROUP (A): -37.7941 90.6858 20.9335 REMARK 3 T TENSOR REMARK 3 T11: 0.1666 T22: 0.1323 REMARK 3 T33: 0.1015 T12: -0.0026 REMARK 3 T13: 0.0107 T23: 0.0118 REMARK 3 L TENSOR REMARK 3 L11: 6.0845 L22: 3.7256 REMARK 3 L33: 1.7668 L12: 0.4116 REMARK 3 L13: 0.8341 L23: -0.0565 REMARK 3 S TENSOR REMARK 3 S11: 0.0599 S12: -0.4812 S13: 0.0148 REMARK 3 S21: 0.4260 S22: 0.0177 S23: -0.1394 REMARK 3 S31: -0.0832 S32: -0.0841 S33: -0.0937 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 81 THROUGH 120 ) REMARK 3 ORIGIN FOR THE GROUP (A): -39.0726 98.8876 12.8841 REMARK 3 T TENSOR REMARK 3 T11: 0.1491 T22: 0.1248 REMARK 3 T33: 0.1421 T12: -0.0114 REMARK 3 T13: -0.0071 T23: 0.0422 REMARK 3 L TENSOR REMARK 3 L11: 3.6278 L22: 4.1908 REMARK 3 L33: 1.2498 L12: -0.4431 REMARK 3 L13: -0.8146 L23: 0.8457 REMARK 3 S TENSOR REMARK 3 S11: 0.0813 S12: 0.2114 S13: 0.3248 REMARK 3 S21: -0.1264 S22: 0.0085 S23: 0.1759 REMARK 3 S31: -0.1371 S32: -0.1479 S33: -0.0792 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 121 THROUGH 147 ) REMARK 3 ORIGIN FOR THE GROUP (A): -25.6857 90.2041 12.9781 REMARK 3 T TENSOR REMARK 3 T11: 0.1195 T22: 0.1725 REMARK 3 T33: 0.2770 T12: -0.0214 REMARK 3 T13: 0.0077 T23: 0.0231 REMARK 3 L TENSOR REMARK 3 L11: 2.9881 L22: 3.6136 REMARK 3 L33: 5.1751 L12: 0.9733 REMARK 3 L13: 0.7904 L23: -0.2768 REMARK 3 S TENSOR REMARK 3 S11: -0.0853 S12: 0.0871 S13: -0.1180 REMARK 3 S21: -0.0402 S22: -0.0594 S23: -0.5935 REMARK 3 S31: -0.1495 S32: 0.1873 S33: 0.1352 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 148 THROUGH 167 ) REMARK 3 ORIGIN FOR THE GROUP (A): -32.1643 88.2397 11.3526 REMARK 3 T TENSOR REMARK 3 T11: 0.0950 T22: 0.1469 REMARK 3 T33: 0.1279 T12: 0.0086 REMARK 3 T13: 0.0140 T23: -0.0145 REMARK 3 L TENSOR REMARK 3 L11: 5.3220 L22: 9.3664 REMARK 3 L33: 3.1974 L12: 4.8344 REMARK 3 L13: -0.7016 L23: -2.0033 REMARK 3 S TENSOR REMARK 3 S11: -0.1452 S12: 0.1344 S13: 0.0633 REMARK 3 S21: 0.0063 S22: 0.0600 S23: -0.3346 REMARK 3 S31: -0.1088 S32: 0.0836 S33: 0.1010 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 168 THROUGH 188 ) REMARK 3 ORIGIN FOR THE GROUP (A): -29.5295 74.2059 12.2103 REMARK 3 T TENSOR REMARK 3 T11: 0.2140 T22: 0.1353 REMARK 3 T33: 0.5083 T12: 0.0083 REMARK 3 T13: 0.0663 T23: 0.0178 REMARK 3 L TENSOR REMARK 3 L11: 8.0441 L22: 3.5177 REMARK 3 L33: 2.3668 L12: 2.2047 REMARK 3 L13: 0.7743 L23: 1.2859 REMARK 3 S TENSOR REMARK 3 S11: -0.0701 S12: 0.0316 S13: -1.0664 REMARK 3 S21: -0.1034 S22: 0.0173 S23: -1.3328 REMARK 3 S31: 0.2152 S32: 0.2929 S33: 0.0163 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 189 THROUGH 207 ) REMARK 3 ORIGIN FOR THE GROUP (A): -43.9442 78.0280 2.0108 REMARK 3 T TENSOR REMARK 3 T11: 0.4046 T22: 0.2918 REMARK 3 T33: 0.0722 T12: -0.1417 REMARK 3 T13: -0.0165 T23: -0.0046 REMARK 3 L TENSOR REMARK 3 L11: 3.0138 L22: 4.0585 REMARK 3 L33: 1.2072 L12: 2.0802 REMARK 3 L13: -1.2686 L23: 0.3544 REMARK 3 S TENSOR REMARK 3 S11: -0.3821 S12: 0.8748 S13: 0.3867 REMARK 3 S21: -1.4234 S22: 0.5966 S23: -0.0890 REMARK 3 S31: 0.1445 S32: -0.0804 S33: -0.1406 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 208 THROUGH 225 ) REMARK 3 ORIGIN FOR THE GROUP (A): -45.2252 71.3040 -3.5267 REMARK 3 T TENSOR REMARK 3 T11: 0.8347 T22: 0.6251 REMARK 3 T33: 0.0597 T12: -0.3398 REMARK 3 T13: 0.1009 T23: -0.4001 REMARK 3 L TENSOR REMARK 3 L11: 7.5982 L22: 0.9482 REMARK 3 L33: 1.4583 L12: 0.4547 REMARK 3 L13: -0.3124 L23: 0.2408 REMARK 3 S TENSOR REMARK 3 S11: 0.3883 S12: 0.3502 S13: -0.4485 REMARK 3 S21: -1.0898 S22: 0.6073 S23: -0.3466 REMARK 3 S31: 0.0788 S32: 0.1542 S33: -0.3965 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 226 THROUGH 239 ) REMARK 3 ORIGIN FOR THE GROUP (A): -44.6328 67.6970 0.3549 REMARK 3 T TENSOR REMARK 3 T11: 0.6875 T22: 0.4727 REMARK 3 T33: 0.3577 T12: -0.1860 REMARK 3 T13: 0.0904 T23: -0.1335 REMARK 3 L TENSOR REMARK 3 L11: 0.0710 L22: 0.1398 REMARK 3 L33: 4.7113 L12: -0.1056 REMARK 3 L13: 0.6532 L23: -0.8011 REMARK 3 S TENSOR REMARK 3 S11: -0.0147 S12: 0.1979 S13: -0.4314 REMARK 3 S21: -1.0111 S22: 0.5817 S23: -0.2034 REMARK 3 S31: 0.7094 S32: 0.1198 S33: -0.4255 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 240 THROUGH 249 ) REMARK 3 ORIGIN FOR THE GROUP (A): -52.8430 78.0791 7.7951 REMARK 3 T TENSOR REMARK 3 T11: 0.1831 T22: 0.2433 REMARK 3 T33: 0.2481 T12: -0.0743 REMARK 3 T13: -0.0622 T23: 0.0630 REMARK 3 L TENSOR REMARK 3 L11: 2.9120 L22: 6.1276 REMARK 3 L33: 2.4607 L12: 0.1302 REMARK 3 L13: -2.6787 L23: 0.2264 REMARK 3 S TENSOR REMARK 3 S11: 0.0778 S12: 0.1785 S13: -0.1153 REMARK 3 S21: -0.6373 S22: 0.1137 S23: 0.7713 REMARK 3 S31: 0.1153 S32: -0.3711 S33: -0.1034 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5Z3J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 12-JAN-18. REMARK 100 THE DEPOSITION ID IS D_1300006420. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-FEB-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : BRUKER AXS MICROSTAR-H REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.32 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26038 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 23.660 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.1 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : 0.05400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.70 REMARK 200 R MERGE FOR SHELL (I) : 0.66600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1ABR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.58 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 8000, 0.2M MAGNESIUM CHLORIDE, REMARK 280 TRIS PH 6.5, MICROBATCH, TEMPERATURE 295.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 20.83000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 41.24000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.04000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 41.24000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 20.83000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.04000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -13 REMARK 465 ARG A -12 REMARK 465 GLY A -11 REMARK 465 SER A -10 REMARK 465 HIS A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 GLY A -3 REMARK 465 MET A -2 REMARK 465 ALA A -1 REMARK 465 SER A 0 REMARK 465 GLU A 1 REMARK 465 ASP A 2 REMARK 465 ARG A 3 REMARK 465 PRO A 250 REMARK 465 ASN A 251 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PRO A 4 CG CD REMARK 470 LYS A 6 CG CD CE NZ REMARK 470 SER A 14 OG REMARK 470 GLU A 26 CD OE1 OE2 REMARK 470 ASP A 60 OD2 REMARK 470 THR A 61 CG2 REMARK 470 ASN A 146 OD1 ND2 REMARK 470 GLN A 180 OE1 NE2 REMARK 470 GLN A 210 CG CD OE1 NE2 REMARK 470 ASP A 211 CG OD1 OD2 REMARK 470 ASN A 215 CG OD1 ND2 REMARK 470 GLN A 216 CG CD OE1 NE2 REMARK 470 ILE A 222 CG1 CG2 CD1 REMARK 470 ARG A 223 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 224 CG OD1 ND2 REMARK 470 GLU A 225 CG CD OE1 OE2 REMARK 470 VAL A 227 CG1 CG2 REMARK 470 ILE A 228 CG1 CG2 CD1 REMARK 470 ASP A 230 CG OD1 OD2 REMARK 470 VAL A 239 CG1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IMD A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NCA A 302 REMARK 999 REMARK 999 SEQUENCE REMARK 999 AUTHORS STATE THAT THE CONFLICT (Y85H) IS DUE TO AN ISOFORM OF REMARK 999 Q7DM12 (ABRIN-A), BUT THE ISOFORM HAS NOT BEEN REPORTED IN THE REMARK 999 UNIPROT DB. FOR REFERENCE : HUNG, C. H., LEE, M. C., LEE, T. C. & REMARK 999 AMP; LIN, J. Y. (1993) PRIMARY STRUCTURE OF THREE DISTINCT REMARK 999 ISOABRINS DETERMINED BY CDNA SEQUENCING : CONSERVATION AND REMARK 999 SIGNIFICANCE, J. MOL. BIOL. 229,263 - 267 DBREF 5Z3J A 1 251 UNP Q7DM12 Q7DM12_ABRPR 1 251 SEQADV 5Z3J MET A -13 UNP Q7DM12 INITIATING METHIONINE SEQADV 5Z3J ARG A -12 UNP Q7DM12 EXPRESSION TAG SEQADV 5Z3J GLY A -11 UNP Q7DM12 EXPRESSION TAG SEQADV 5Z3J SER A -10 UNP Q7DM12 EXPRESSION TAG SEQADV 5Z3J HIS A -9 UNP Q7DM12 EXPRESSION TAG SEQADV 5Z3J HIS A -8 UNP Q7DM12 EXPRESSION TAG SEQADV 5Z3J HIS A -7 UNP Q7DM12 EXPRESSION TAG SEQADV 5Z3J HIS A -6 UNP Q7DM12 EXPRESSION TAG SEQADV 5Z3J HIS A -5 UNP Q7DM12 EXPRESSION TAG SEQADV 5Z3J HIS A -4 UNP Q7DM12 EXPRESSION TAG SEQADV 5Z3J GLY A -3 UNP Q7DM12 EXPRESSION TAG SEQADV 5Z3J MET A -2 UNP Q7DM12 EXPRESSION TAG SEQADV 5Z3J ALA A -1 UNP Q7DM12 EXPRESSION TAG SEQADV 5Z3J SER A 0 UNP Q7DM12 EXPRESSION TAG SEQADV 5Z3J HIS A 85 UNP Q7DM12 TYR 85 SEE SEQUENCE DETAILS SEQRES 1 A 265 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY MET ALA SEQRES 2 A 265 SER GLU ASP ARG PRO ILE LYS PHE SER THR GLU GLY ALA SEQRES 3 A 265 THR SER GLN SER TYR LYS GLN PHE ILE GLU ALA LEU ARG SEQRES 4 A 265 GLU ARG LEU ARG GLY GLY LEU ILE HIS ASP ILE PRO VAL SEQRES 5 A 265 LEU PRO ASP PRO THR THR LEU GLN GLU ARG ASN ARG TYR SEQRES 6 A 265 ILE THR VAL GLU LEU SER ASN SER ASP THR GLU SER ILE SEQRES 7 A 265 GLU VAL GLY ILE ASP VAL THR ASN ALA TYR VAL VAL ALA SEQRES 8 A 265 TYR ARG ALA GLY THR GLN SER HIS PHE LEU ARG ASP ALA SEQRES 9 A 265 PRO SER SER ALA SER ASP TYR LEU PHE THR GLY THR ASP SEQRES 10 A 265 GLN HIS SER LEU PRO PHE TYR GLY THR TYR GLY ASP LEU SEQRES 11 A 265 GLU ARG TRP ALA HIS GLN SER ARG GLN GLN ILE PRO LEU SEQRES 12 A 265 GLY LEU GLN ALA LEU THR HIS GLY ILE SER PHE PHE ARG SEQRES 13 A 265 SER GLY GLY ASN ASP ASN GLU GLU LYS ALA ARG THR LEU SEQRES 14 A 265 ILE VAL ILE ILE GLN MET VAL ALA GLU ALA ALA ARG PHE SEQRES 15 A 265 ARG TYR ILE SER ASN ARG VAL ARG VAL SER ILE GLN THR SEQRES 16 A 265 GLY THR ALA PHE GLN PRO ASP ALA ALA MET ILE SER LEU SEQRES 17 A 265 GLU ASN ASN TRP ASP ASN LEU SER ARG GLY VAL GLN GLU SEQRES 18 A 265 SER VAL GLN ASP THR PHE PRO ASN GLN VAL THR LEU THR SEQRES 19 A 265 ASN ILE ARG ASN GLU PRO VAL ILE VAL ASP SER LEU SER SEQRES 20 A 265 HIS PRO THR VAL ALA VAL LEU ALA LEU MET LEU PHE VAL SEQRES 21 A 265 CYS ASN PRO PRO ASN HET IMD A 301 5 HET NCA A 302 9 HETNAM IMD IMIDAZOLE HETNAM NCA NICOTINAMIDE FORMUL 2 IMD C3 H5 N2 1+ FORMUL 3 NCA C6 H6 N2 O FORMUL 4 HOH *197(H2 O) HELIX 1 AA1 THR A 13 ARG A 29 1 17 HELIX 2 AA2 ASP A 41 LEU A 45 5 5 HELIX 3 AA3 GLN A 46 ASN A 49 5 4 HELIX 4 AA4 SER A 93 LEU A 98 1 6 HELIX 5 AA5 THR A 112 HIS A 121 1 10 HELIX 6 AA6 SER A 123 ILE A 127 5 5 HELIX 7 AA7 GLY A 130 GLY A 144 1 15 HELIX 8 AA8 ASP A 147 PHE A 168 1 22 HELIX 9 AA9 PHE A 168 GLY A 182 1 15 HELIX 10 AB1 ASP A 188 ASN A 197 1 10 HELIX 11 AB2 ASN A 197 SER A 208 1 12 HELIX 12 AB3 HIS A 234 LEU A 240 5 7 SHEET 1 AA1 6 ILE A 5 SER A 8 0 SHEET 2 AA1 6 TYR A 51 SER A 59 1 O GLU A 55 N ILE A 5 SHEET 3 AA1 6 GLU A 62 ASP A 69 -1 O GLU A 62 N ASN A 58 SHEET 4 AA1 6 VAL A 75 ALA A 80 -1 O ALA A 77 N GLY A 67 SHEET 5 AA1 6 GLN A 83 PHE A 86 -1 O GLN A 83 N ALA A 80 SHEET 6 AA1 6 ASP A 103 SER A 106 1 O HIS A 105 N PHE A 86 SHEET 1 AA2 2 GLY A 31 ILE A 33 0 SHEET 2 AA2 2 ILE A 36 VAL A 38 -1 O VAL A 38 N GLY A 31 SHEET 1 AA3 2 THR A 212 THR A 220 0 SHEET 2 AA3 2 PRO A 226 SER A 231 -1 O ASP A 230 N PHE A 213 SITE 1 AC1 6 GLU A 22 SER A 95 GLN A 104 HIS A 105 SITE 2 AC1 6 SER A 106 HOH A 517 SITE 1 AC2 7 TYR A 74 VAL A 75 GLY A 111 TYR A 113 SITE 2 AC2 7 ILE A 159 GLU A 164 ARG A 167 CRYST1 41.660 74.080 82.480 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024004 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013499 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012124 0.00000