HEADER DNA BINDING PROTEIN 10-JAN-18 5Z42 TITLE AQUIFEX AEOLICUS MUTL ENDONUCLEASE DOMAIN WITH THREE ZINC IONS. COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA MISMATCH REPAIR PROTEIN MUTL; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 325-425; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AQUIFEX AEOLICUS (STRAIN VF5); SOURCE 3 ORGANISM_TAXID: 224324; SOURCE 4 STRAIN: VF5; SOURCE 5 GENE: MUTL, AQ_1578; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA2(DE3) PLYSS KEYWDS MISMATCH REPAIR PROTEIN, ENDONUCLEASE, ZINC, THERMOPHILE, DNA BINDING KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR K.FUKUI,T.YANO REVDAT 3 27-MAR-24 5Z42 1 LINK REVDAT 2 30-MAY-18 5Z42 1 JRNL REVDAT 1 25-APR-18 5Z42 0 JRNL AUTH K.FUKUI,S.BABA,T.KUMASAKA,T.YANO JRNL TITL MULTIPLE ZINC IONS MAINTAIN THE OPEN CONFORMATION OF THE JRNL TITL 2 CATALYTIC SITE IN THE DNA MISMATCH REPAIR ENDONUCLEASE MUTL JRNL TITL 3 FROM AQUIFEX AEOLICUS JRNL REF FEBS LETT. V. 592 1611 2018 JRNL REFN ISSN 1873-3468 JRNL PMID 29645090 JRNL DOI 10.1002/1873-3468.13050 REMARK 2 REMARK 2 RESOLUTION. 1.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.79 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 27636 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.204 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.230 REMARK 3 FREE R VALUE TEST SET COUNT : 1999 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 32.8037 - 3.1318 0.99 2048 159 0.1918 0.1892 REMARK 3 2 3.1318 - 2.4861 1.00 1919 150 0.2078 0.2105 REMARK 3 3 2.4861 - 2.1719 1.00 1875 145 0.1865 0.2029 REMARK 3 4 2.1719 - 1.9733 1.00 1843 145 0.1733 0.1985 REMARK 3 5 1.9733 - 1.8319 1.00 1868 145 0.1738 0.2134 REMARK 3 6 1.8319 - 1.7239 0.99 1811 141 0.1793 0.1959 REMARK 3 7 1.7239 - 1.6376 0.99 1810 141 0.1759 0.2145 REMARK 3 8 1.6376 - 1.5663 0.99 1795 141 0.1674 0.2198 REMARK 3 9 1.5663 - 1.5060 0.99 1802 140 0.1745 0.1857 REMARK 3 10 1.5060 - 1.4540 0.99 1797 141 0.1854 0.2262 REMARK 3 11 1.4540 - 1.4086 0.99 1763 137 0.2027 0.2841 REMARK 3 12 1.4086 - 1.3683 0.98 1760 138 0.2096 0.2191 REMARK 3 13 1.3683 - 1.3323 0.98 1780 138 0.2191 0.2197 REMARK 3 14 1.3323 - 1.2998 0.98 1766 138 0.2319 0.2335 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.100 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.640 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 894 REMARK 3 ANGLE : 1.271 1201 REMARK 3 CHIRALITY : 0.095 126 REMARK 3 PLANARITY : 0.009 153 REMARK 3 DIHEDRAL : 21.686 357 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 16.9063 6.7123 -10.0108 REMARK 3 T TENSOR REMARK 3 T11: 0.1054 T22: 0.1221 REMARK 3 T33: 0.1257 T12: 0.0144 REMARK 3 T13: -0.0186 T23: 0.0033 REMARK 3 L TENSOR REMARK 3 L11: 0.3819 L22: 0.7822 REMARK 3 L33: 2.3560 L12: 0.2562 REMARK 3 L13: -0.1185 L23: 0.5786 REMARK 3 S TENSOR REMARK 3 S11: -0.0039 S12: 0.0171 S13: 0.0042 REMARK 3 S21: -0.0183 S22: 0.0479 S23: -0.0570 REMARK 3 S31: -0.0257 S32: 0.2005 S33: -0.0372 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5Z42 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-JAN-18. REMARK 100 THE DEPOSITION ID IS D_1300006442. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-JUL-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL38B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27699 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 13.60 REMARK 200 R MERGE (I) : 0.07400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 50.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.32 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.7 REMARK 200 DATA REDUNDANCY IN SHELL : 14.00 REMARK 200 R MERGE FOR SHELL (I) : 0.82800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.333 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM SODIUM ACETATE, 5MM ZINC REMARK 280 ACETATE, 15%(V/V) POLYETHYLENE GLYCOL 400, PH 4.6, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 83.95900 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 17.81150 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 17.81150 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 125.93850 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 17.81150 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 17.81150 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 41.97950 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 17.81150 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 17.81150 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 125.93850 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 17.81150 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 17.81150 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 41.97950 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 83.95900 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5000 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10480 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -372.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG A 92 O HOH A 301 1.88 REMARK 500 O HOH A 422 O HOH A 425 2.07 REMARK 500 O HOH A 403 O HOH A 411 2.09 REMARK 500 NH1 ARG A 92 O HOH A 302 2.11 REMARK 500 O HOH A 306 O HOH A 389 2.12 REMARK 500 O HOH A 306 O HOH A 361 2.15 REMARK 500 O HOH A 372 O HOH A 382 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 301 O HOH A 324 7655 1.85 REMARK 500 O HOH A 394 O HOH A 397 3544 1.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 14 -38.35 -134.32 REMARK 500 ASP A 20 -155.73 -115.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 426 DISTANCE = 6.24 ANGSTROMS REMARK 525 HOH A 427 DISTANCE = 6.71 ANGSTROMS REMARK 525 HOH A 428 DISTANCE = 7.18 ANGSTROMS REMARK 525 HOH A 429 DISTANCE = 7.41 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 30 NE2 REMARK 620 2 GLU A 34 OE2 99.5 REMARK 620 3 CYS A 48 SG 103.2 90.1 REMARK 620 4 HOH A 372 O 94.8 83.9 161.7 REMARK 620 5 HOH A 379 O 82.1 178.3 90.1 95.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 202 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 34 OE1 REMARK 620 2 CYS A 79 SG 100.1 REMARK 620 3 HIS A 81 ND1 104.3 111.4 REMARK 620 4 HOH A 372 O 93.6 133.9 107.3 REMARK 620 5 HOH A 382 O 148.2 97.9 93.1 55.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 210 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 43 OD1 REMARK 620 2 ASP A 43 OD2 50.2 REMARK 620 3 HOH A 388 O 96.3 114.7 REMARK 620 4 HOH A 394 O 144.1 95.2 109.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 203 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 48 SG REMARK 620 2 HOH A 399 O 88.6 REMARK 620 3 HOH A 406 O 110.0 142.8 REMARK 620 4 HOH A 425 O 100.2 79.8 125.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 208 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 61 OE1 REMARK 620 2 GLU A 61 OE2 54.9 REMARK 620 3 TYR A 102 O 96.0 122.8 REMARK 620 4 TYR A 102 OXT 94.1 120.4 2.5 REMARK 620 5 HOH A 387 O 90.8 145.4 57.8 59.3 REMARK 620 6 HOH A 395 O 113.5 97.8 45.2 44.7 99.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 204 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 93 OE2 REMARK 620 2 GLU A 96 OE1 84.9 REMARK 620 3 HOH A 310 O 91.1 106.4 REMARK 620 4 HOH A 384 O 90.1 138.7 114.7 REMARK 620 5 HOH A 390 O 164.7 100.7 100.8 76.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 206 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 378 O REMARK 620 2 HOH A 403 O 97.3 REMARK 620 3 HOH A 411 O 74.6 41.3 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 208 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 209 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 210 DBREF 5Z42 A 2 102 UNP O67518 MUTL_AQUAE 325 425 SEQADV 5Z42 MET A 1 UNP O67518 INITIATING METHIONINE SEQRES 1 A 102 MET LYS PRO THR TYR GLU ILE LEU GLY GLN MET ASP GLU SEQRES 2 A 102 THR PHE ILE LEU VAL LYS ASP SER GLU TYR LEU TYR PHE SEQRES 3 A 102 VAL ASP GLN HIS LEU LEU GLU GLU ARG ILE ASN TYR GLU SEQRES 4 A 102 LYS LEU LYS ASP GLU ASN LEU ALA CYS ARG ILE SER VAL SEQRES 5 A 102 LYS ALA GLY GLN LYS LEU SER GLU GLU LYS ILE ARG GLU SEQRES 6 A 102 LEU ILE LYS THR TRP ARG ASN LEU GLU ASN PRO HIS VAL SEQRES 7 A 102 CYS PRO HIS GLY ARG PRO ILE TYR TYR LYS ILE PRO LEU SEQRES 8 A 102 ARG GLU ILE TYR GLU LYS VAL GLY ARG ASN TYR HET ZN A 201 1 HET ZN A 202 1 HET ZN A 203 1 HET ZN A 204 1 HET NA A 205 1 HET NA A 206 1 HET PEG A 207 7 HET ZN A 208 1 HET CL A 209 1 HET MG A 210 1 HETNAM ZN ZINC ION HETNAM NA SODIUM ION HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM CL CHLORIDE ION HETNAM MG MAGNESIUM ION FORMUL 2 ZN 5(ZN 2+) FORMUL 6 NA 2(NA 1+) FORMUL 8 PEG C4 H10 O3 FORMUL 10 CL CL 1- FORMUL 11 MG MG 2+ FORMUL 12 HOH *129(H2 O) HELIX 1 AA1 GLN A 29 LYS A 42 1 14 HELIX 2 AA2 ASP A 43 SER A 51 1 9 HELIX 3 AA3 SER A 59 LEU A 73 1 15 HELIX 4 AA4 LEU A 91 VAL A 98 1 8 SHEET 1 AA1 4 GLU A 6 MET A 11 0 SHEET 2 AA1 4 PHE A 15 LYS A 19 -1 O LEU A 17 N GLY A 9 SHEET 3 AA1 4 TYR A 23 ASP A 28 -1 O TYR A 25 N VAL A 18 SHEET 4 AA1 4 TYR A 86 PRO A 90 -1 O TYR A 87 N PHE A 26 LINK NE2 HIS A 30 ZN ZN A 201 1555 1555 2.34 LINK OE2 GLU A 34 ZN ZN A 201 1555 1555 2.29 LINK OE1 GLU A 34 ZN ZN A 202 1555 1555 2.15 LINK OD1 ASP A 43 MG MG A 210 1555 1555 2.69 LINK OD2 ASP A 43 MG MG A 210 1555 1555 2.34 LINK SG CYS A 48 ZN ZN A 201 1555 1555 2.56 LINK SG CYS A 48 ZN ZN A 203 1555 1555 2.59 LINK OE1 GLU A 61 ZN ZN A 208 1555 1555 2.31 LINK OE2 GLU A 61 ZN ZN A 208 1555 1555 2.43 LINK SG CYS A 79 ZN ZN A 202 1555 1555 2.48 LINK ND1 HIS A 81 ZN ZN A 202 1555 1555 2.30 LINK OE2 GLU A 93 ZN ZN A 204 1555 1555 2.15 LINK OE1 GLU A 96 ZN ZN A 204 1555 1555 2.10 LINK O TYR A 102 ZN ZN A 208 1555 7655 2.49 LINK OXT TYR A 102 ZN ZN A 208 1555 7655 2.37 LINK ZN ZN A 201 O HOH A 372 1555 1555 2.26 LINK ZN ZN A 201 O HOH A 379 1555 1555 2.39 LINK ZN ZN A 202 O HOH A 372 1555 1555 2.38 LINK ZN ZN A 202 O HOH A 382 1555 1555 2.28 LINK ZN ZN A 203 O HOH A 399 1555 1555 2.47 LINK ZN ZN A 203 O HOH A 406 1555 1555 2.23 LINK ZN ZN A 203 O HOH A 425 1555 1555 2.54 LINK ZN ZN A 204 O HOH A 310 1555 1555 2.52 LINK ZN ZN A 204 O HOH A 384 1555 1555 2.48 LINK ZN ZN A 204 O HOH A 390 1555 1555 2.27 LINK NA NA A 206 O HOH A 378 1555 1555 2.62 LINK NA NA A 206 O HOH A 403 1555 1555 2.29 LINK NA NA A 206 O HOH A 411 1555 1555 3.16 LINK ZN ZN A 208 O HOH A 387 1555 1555 2.47 LINK ZN ZN A 208 O HOH A 395 1555 1555 2.49 LINK MG MG A 210 O HOH A 388 1555 1555 2.67 LINK MG MG A 210 O HOH A 394 1555 1555 2.39 SITE 1 AC1 6 HIS A 30 GLU A 34 CYS A 48 HOH A 372 SITE 2 AC1 6 HOH A 379 HOH A 399 SITE 1 AC2 5 GLU A 34 CYS A 79 HIS A 81 HOH A 372 SITE 2 AC2 5 HOH A 382 SITE 1 AC3 6 CYS A 48 HOH A 373 HOH A 399 HOH A 406 SITE 2 AC3 6 HOH A 422 HOH A 425 SITE 1 AC4 5 GLU A 93 GLU A 96 HOH A 310 HOH A 384 SITE 2 AC4 5 HOH A 390 SITE 1 AC5 2 PRO A 3 THR A 4 SITE 1 AC6 3 GLU A 6 HOH A 378 HOH A 403 SITE 1 AC7 4 MET A 1 TRP A 70 ARG A 71 HOH A 304 SITE 1 AC8 4 GLU A 61 TYR A 102 HOH A 387 HOH A 395 SITE 1 AC9 2 ALA A 54 ARG A 100 SITE 1 AD1 3 ASP A 43 HOH A 388 HOH A 394 CRYST1 35.623 35.623 167.918 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.028072 0.000000 0.000000 0.00000 SCALE2 0.000000 0.028072 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005955 0.00000