HEADER IMMUNE SYSTEM 10-JAN-18 5Z4B TITLE GB1 STRUCTURE DETERMINATION IN LIVING EUKARYOTIC CELLS BY IN-CELL NMR TITLE 2 SPECTROSCOPY COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN LG; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: IGG_BINDING_B DOMAIN,B1 DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: FINEGOLDIA MAGNA; SOURCE 3 ORGANISM_COMMON: PEPTOSTREPTOCOCCUS MAGNUS; SOURCE 4 ORGANISM_TAXID: 1260; SOURCE 5 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS PROTEIN, IMMUNE SYSTEM EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR T.TANAKA,I.TEPPEI,H.KAMOSHIDA,M.MISHIMA,M.SHIRAKAWA,P.GUENTERT,Y.ITO REVDAT 3 14-JUN-23 5Z4B 1 REMARK REVDAT 2 14-AUG-19 5Z4B 1 JRNL REMARK REVDAT 1 23-JAN-19 5Z4B 0 JRNL AUTH T.TANAKA,T.IKEYA,H.KAMOSHIDA,Y.SUEMOTO,M.MISHIMA, JRNL AUTH 2 M.SHIRAKAWA,P.GUNTERT,Y.ITO JRNL TITL HIGH-RESOLUTION PROTEIN 3D STRUCTURE DETERMINATION IN LIVING JRNL TITL 2 EUKARYOTIC CELLS. JRNL REF ANGEW.CHEM.INT.ED.ENGL. V. 58 7284 2019 JRNL REFN ESSN 1521-3773 JRNL PMID 30938016 JRNL DOI 10.1002/ANIE.201900840 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 3.98, OPAL 1.4 REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), REMARK 3 LUGINBUHL, GUNTERT, BILLETER AND WUTHRICH (OPAL) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5Z4B COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-JAN-18. REMARK 100 THE DEPOSITION ID IS D_1300006447. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 300 REMARK 210 PH : 0 REMARK 210 IONIC STRENGTH : 0 REMARK 210 PRESSURE : AMBIENT ATM REMARK 210 SAMPLE CONTENTS : 50 UM [U-100% 15N] GB1, 90% REMARK 210 H2O/10% D2O; 50 UM [U-100% 13C; REMARK 210 U-100% 15N] GB1, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D HNCO; 3D HNCA; 3D HN(CO)CA; REMARK 210 3D CBCA(CO)NH; 3D HBHA(CO)NH; 3D REMARK 210 HCCH-TOCSY; 3D 1H-15N NOESY; 3D REMARK 210 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : ANALYSIS 2.4.2, TOPSPIN 3.0, REMARK 210 AZARA 2.8.1, TALOS-N 4.12, REMARK 210 MOLMOL 2.6 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH TYR A 46 OD2 ASP A 48 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 3 LYS A 51 36.86 81.76 REMARK 500 5 ASP A 41 46.79 -148.17 REMARK 500 11 LYS A 51 29.07 83.14 REMARK 500 13 GLN A 33 -61.40 -91.08 REMARK 500 16 ASN A 9 70.18 -115.19 REMARK 500 17 LYS A 51 38.81 73.24 REMARK 500 18 LYS A 51 33.57 74.27 REMARK 500 19 ASP A 41 57.48 -149.43 REMARK 500 20 ASP A 41 52.69 -148.05 REMARK 500 20 LYS A 51 49.38 39.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 TYR A 34 0.12 SIDE CHAIN REMARK 500 3 TYR A 34 0.08 SIDE CHAIN REMARK 500 4 TYR A 34 0.07 SIDE CHAIN REMARK 500 12 TYR A 34 0.12 SIDE CHAIN REMARK 500 12 TYR A 46 0.08 SIDE CHAIN REMARK 500 15 TYR A 34 0.09 SIDE CHAIN REMARK 500 16 TYR A 34 0.08 SIDE CHAIN REMARK 500 17 TYR A 34 0.10 SIDE CHAIN REMARK 500 17 TYR A 46 0.06 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 36153 RELATED DB: BMRB REMARK 900 GB1 STRUCTURE DETERMINATION IN LIVING EUKARYOTIC CELLS BY IN-CELL REMARK 900 NMR SPECTROSCOPY DBREF 5Z4B A 3 57 UNP Q53291 Q53291_FINMA 330 384 SEQADV 5Z4B MET A 1 UNP Q53291 EXPRESSION TAG SEQADV 5Z4B GLY A 2 UNP Q53291 EXPRESSION TAG SEQRES 1 A 57 MET GLY THR TYR LYS LEU ILE LEU ASN GLY LYS THR LEU SEQRES 2 A 57 LYS GLY GLU THR THR THR GLU ALA VAL ASP ALA ALA THR SEQRES 3 A 57 ALA GLU LYS VAL PHE LYS GLN TYR ALA ASN ASP ASN GLY SEQRES 4 A 57 VAL ASP GLY GLU TRP THR TYR ASP ASP ALA THR LYS THR SEQRES 5 A 57 PHE THR VAL THR GLU HELIX 1 AA1 ASP A 23 ASP A 37 1 15 SHEET 1 AA1 4 LYS A 14 ALA A 21 0 SHEET 2 AA1 4 GLY A 2 ASN A 9 -1 N LEU A 6 O THR A 17 SHEET 3 AA1 4 THR A 52 THR A 56 1 O PHE A 53 N LYS A 5 SHEET 4 AA1 4 GLU A 43 ASP A 47 -1 N THR A 45 O THR A 54 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1