HEADER BIOSYNTHETIC PROTEIN 11-JAN-18 5Z4F TITLE AN ANTHRAHYDROQUINO-GAMA-PYRONE SYNTHASE TXN09 COMPLEXED WITH SUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: TXNO9; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ANTHRAHYDROQUINO-GAMA-PYRONE SYNTHASE; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES BOTTROPENSIS; SOURCE 3 ORGANISM_TAXID: 42235; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI K-12; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 83333; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: K-12 KEYWDS TYPE II POLYKETIDE HETEROCYCLASE, ENZYME MECHANISM, NATURAL PRODUCT, KEYWDS 2 STREPTOMYCES BOTTROPENSIS, BIOSYNTHETIC PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR Y.J.SONG,C.Y.CAO REVDAT 3 15-MAY-24 5Z4F 1 REMARK REVDAT 2 14-JUN-23 5Z4F 1 REMARK REVDAT 1 30-JAN-19 5Z4F 0 JRNL AUTH X.F.HOU,Y.J.SONG,M.ZHANG,W.X.LAN,S.MENG,C.X.WANG,H.X.PAN, JRNL AUTH 2 C.Y.CAO,G.L.TANG JRNL TITL ENZYMOLOGY OF ANTHRAQUINONE-GAMMA-PYRONE RING FORMATION IN JRNL TITL 2 COMPLEX AROMATIC POLYKETIDE BIOSYNTHESIS. JRNL REF ANGEW. CHEM. INT. ED. ENGL. V. 57 13475 2018 JRNL REFN ESSN 1521-3773 JRNL PMID 30151879 JRNL DOI 10.1002/ANIE.201806729 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR NIH REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5Z4F COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-JAN-18. REMARK 100 THE DEPOSITION ID IS D_1300006411. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 7.4 REMARK 210 IONIC STRENGTH : 60 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 0.7 MM [U-99% 13C; U-99% 15N] REMARK 210 TXN09, 50 MM SODIUM CHLORIDE, 20 REMARK 210 MM SODIUM PHOSPHATE, 10 % V/V REMARK 210 DEUTERATION DMSO, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D HNCO; 3D HNCA; 3D HN(CO)CA; REMARK 210 3D HNCACB; 3D CBCA(CO)NH; 2D 1H- REMARK 210 15N HSQC; 2D 1H-13C HSQC REMARK 210 ALIPHATIC; 2D 1H-13C HSQC REMARK 210 AROMATIC; 3D HCCH-TOCSY; 3D 1H- REMARK 210 15N TOCSY; 3D 1H-15N NOESY; 3D REMARK 210 1H-13C NOESY ALIPHATIC; 3D 1H- REMARK 210 13C NOESY AROMATIC; 2D FILTERED REMARK 210 NOESY; 2D FILTERED TOCSY; 3D REMARK 210 EDITED/FILTERED NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : DD2 REMARK 210 SPECTROMETER MANUFACTURER : AGILENT REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TALOS, SPARKY, NMRPIPE REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 LEU A 155 REMARK 465 GLU A 156 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HD1 HIS A 127 H GLY A 128 1.18 REMARK 500 O GLY A 46 H TRP A 60 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ARG A 28 54.88 -179.61 REMARK 500 1 HIS A 37 117.30 57.90 REMARK 500 1 PHE A 52 -179.64 171.51 REMARK 500 1 THR A 65 -178.87 -59.88 REMARK 500 1 GLU A 74 146.86 -175.13 REMARK 500 1 PRO A 77 153.47 -30.10 REMARK 500 1 PRO A 78 78.05 -28.83 REMARK 500 1 HIS A 79 -40.28 -176.84 REMARK 500 1 HIS A 125 -12.22 -45.82 REMARK 500 1 ASP A 129 -133.29 49.04 REMARK 500 1 ASP A 139 99.09 61.91 REMARK 500 2 SER A 27 -69.03 -94.35 REMARK 500 2 ARG A 28 68.23 -169.48 REMARK 500 2 PHE A 52 -175.10 170.32 REMARK 500 2 THR A 65 -178.32 -61.02 REMARK 500 2 GLU A 74 159.33 179.96 REMARK 500 2 PRO A 78 -111.87 -56.62 REMARK 500 2 HIS A 125 -11.26 -46.03 REMARK 500 2 ASP A 139 97.77 67.75 REMARK 500 3 ARG A 28 56.09 -177.15 REMARK 500 3 PRO A 34 73.44 -101.44 REMARK 500 3 SER A 36 -61.74 158.32 REMARK 500 3 PHE A 52 -175.77 171.28 REMARK 500 3 THR A 65 -179.88 -61.68 REMARK 500 3 PRO A 78 -150.61 -54.95 REMARK 500 3 HIS A 79 49.32 -103.00 REMARK 500 3 HIS A 90 40.62 -106.01 REMARK 500 3 HIS A 125 -12.74 -44.71 REMARK 500 3 ASP A 139 102.94 78.35 REMARK 500 3 SER A 142 179.74 -53.12 REMARK 500 3 PRO A 143 -19.61 -39.53 REMARK 500 4 SER A 27 -68.87 -98.90 REMARK 500 4 ARG A 28 72.87 -170.62 REMARK 500 4 ALA A 45 -47.53 -134.92 REMARK 500 4 PHE A 52 -177.32 171.35 REMARK 500 4 THR A 65 -179.32 -64.22 REMARK 500 4 PRO A 77 154.41 -30.82 REMARK 500 4 PRO A 78 79.46 -29.04 REMARK 500 4 HIS A 79 -40.65 -178.49 REMARK 500 4 SER A 112 15.41 59.22 REMARK 500 4 HIS A 125 -11.84 -44.52 REMARK 500 4 ASP A 129 71.21 43.39 REMARK 500 4 ASP A 139 98.74 62.98 REMARK 500 5 ARG A 28 58.92 -171.54 REMARK 500 5 PHE A 52 -175.89 171.83 REMARK 500 5 THR A 65 -178.22 -61.26 REMARK 500 5 PRO A 78 -132.42 -60.83 REMARK 500 5 HIS A 79 53.76 -119.27 REMARK 500 5 GLN A 92 77.23 170.35 REMARK 500 5 SER A 93 -77.94 -124.05 REMARK 500 REMARK 500 THIS ENTRY HAS 212 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 96F A 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 36155 RELATED DB: BMRB REMARK 900 AN ANTHRAHYDROQUINO-GAMA-PYRONE SYNTHASE TXN09 COMPLEXED WITH SUM DBREF1 5Z4F A 1 154 UNP A0A0K1H313_9ACTN DBREF2 5Z4F A A0A0K1H313 1 154 SEQADV 5Z4F GLY A -1 UNP A0A0K1H31 EXPRESSION TAG SEQADV 5Z4F SER A 0 UNP A0A0K1H31 EXPRESSION TAG SEQADV 5Z4F LEU A 155 UNP A0A0K1H31 EXPRESSION TAG SEQADV 5Z4F GLU A 156 UNP A0A0K1H31 EXPRESSION TAG SEQRES 1 A 158 GLY SER MET PRO GLU GLU ILE PRO ASP VAL ARG LYS SER SEQRES 2 A 158 VAL VAL VAL ALA ALA SER VAL GLU HIS CYS PHE GLU VAL SEQRES 3 A 158 PHE THR SER ARG PRO ALA ASP TRP TRP PRO PRO SER HIS SEQRES 4 A 158 VAL LEU VAL LYS LYS GLU ARG ALA GLY LEU ALA PHE GLU SEQRES 5 A 158 PRO PHE VAL GLY GLY ARG TYR TYR GLU TRP ASP ILE ASP SEQRES 6 A 158 GLY THR GLU ILE VAL TRP GLY ARG ILE LEU GLU TRP ASP SEQRES 7 A 158 PRO PRO HIS ARG LEU ALA MET THR TRP ARG ILE ASP GLY SEQRES 8 A 158 HIS TRP GLN SER VAL PRO ASP ASP ASP ARG ALA SER GLU SEQRES 9 A 158 ILE GLU VAL ASP PHE VAL PRO ASN GLY SER GLY GLY THR SEQRES 10 A 158 ARG VAL GLU LEU ALA HIS VAL LYS LEU HIS ARG HIS GLY SEQRES 11 A 158 ASP GLY ALA TRP ASN ILE HIS LYS ALA LEU ASP GLY PRO SEQRES 12 A 158 SER PRO GLY GLU THR LEU ALA ARG PHE ALA ASN VAL ILE SEQRES 13 A 158 LEU GLU HET 96F A 201 48 HETNAM 96F 1,8-DIHYDROXY-2-[(4R)-4-HYDROXY-4-METHYL-3- HETNAM 2 96F OXOHEXANOYL]-3-METHYLANTHRACENE-9,10-DIONE FORMUL 2 96F C22 H20 O7 HELIX 1 AA1 SER A 17 ARG A 28 1 12 HELIX 2 AA2 LYS A 123 HIS A 127 5 5 HELIX 3 AA3 GLY A 130 ASP A 139 1 10 HELIX 4 AA4 GLU A 145 ILE A 154 1 10 SHEET 1 AA1 5 VAL A 8 VAL A 14 0 SHEET 2 AA1 5 GLY A 114 HIS A 121 -1 O THR A 115 N VAL A 14 SHEET 3 AA1 5 GLU A 102 ASN A 110 -1 N ASN A 110 O GLY A 114 SHEET 4 AA1 5 ARG A 80 THR A 84 -1 N MET A 83 O ILE A 103 SHEET 5 AA1 5 GLU A 74 ASP A 76 -1 N GLU A 74 O ALA A 82 SHEET 1 AA2 3 ARG A 44 GLY A 46 0 SHEET 2 AA2 3 TYR A 58 ASP A 61 -1 O TRP A 60 N GLY A 46 SHEET 3 AA2 3 GLU A 66 VAL A 68 -1 O ILE A 67 N GLU A 59 SITE 1 AC1 9 PHE A 25 VAL A 117 LEU A 119 GLY A 140 SITE 2 AC1 9 PRO A 141 GLU A 145 THR A 146 LEU A 147 SITE 3 AC1 9 PHE A 150 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1