HEADER HYDROLASE 17-JAN-18 5Z5B TITLE CRYSTAL STRUCTURE OF TK-PTP IN THE G95A MUTANT FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN-TYROSINE PHOSPHATASE; COMPND 3 CHAIN: A, B, C; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOCOCCUS KODAKARENSIS KOD1; SOURCE 3 ORGANISM_TAXID: 69014; SOURCE 4 STRAIN: KOD1; SOURCE 5 GENE: TK-PTP, TK0241; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TYROSINE PHOSPHATASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR B.KU,H.Y.YUN,S.J.KIM REVDAT 2 22-NOV-23 5Z5B 1 REMARK REVDAT 1 27-JUN-18 5Z5B 0 JRNL AUTH H.Y.YUN,J.LEE,H.KIM,H.RYU,H.C.SHIN,B.H.OH,B.KU,S.J.KIM JRNL TITL STRUCTURAL STUDY REVEALS THE TEMPERATURE-DEPENDENT JRNL TITL 2 CONFORMATIONAL FLEXIBILITY OF TK-PTP, A PROTEIN TYROSINE JRNL TITL 3 PHOSPHATASE FROM THERMOCOCCUS KODAKARAENSIS KOD1 JRNL REF PLOS ONE V. 13 97635 2018 JRNL REFN ESSN 1932-6203 JRNL PMID 29791483 JRNL DOI 10.1371/JOURNAL.PONE.0197635 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 77.40 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 90.6 REMARK 3 NUMBER OF REFLECTIONS : 25754 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.222 REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.265 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1374 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1363 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 64.27 REMARK 3 BIN R VALUE (WORKING SET) : 0.2860 REMARK 3 BIN FREE R VALUE SET COUNT : 60 REMARK 3 BIN FREE R VALUE : 0.4010 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3707 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 11 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.54 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.16000 REMARK 3 B22 (A**2) : -0.16000 REMARK 3 B33 (A**2) : 0.53000 REMARK 3 B12 (A**2) : -0.08000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.310 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.243 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.193 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.346 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.921 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.881 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3782 ; 0.016 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3687 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5096 ; 1.868 ; 1.979 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8487 ; 1.077 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 458 ; 7.384 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 176 ;33.990 ;22.670 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 702 ;18.449 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 44 ;17.165 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 559 ; 0.100 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4144 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 800 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1842 ; 2.850 ; 3.575 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1843 ; 2.850 ; 3.575 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2296 ; 4.445 ; 5.354 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2297 ; 4.444 ; 5.356 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1940 ; 3.267 ; 3.982 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1935 ; 3.267 ; 3.988 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2801 ; 5.220 ; 5.817 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4078 ; 6.952 ;40.737 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4079 ; 6.951 ;40.753 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5Z5B COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-JAN-18. REMARK 100 THE DEPOSITION ID IS D_1300006507. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-SEP-17 REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 7A (6B, 6C1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28515 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.298 REMARK 200 RESOLUTION RANGE LOW (A) : 77.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.2 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 27.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.34 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 5Z5A REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M BIS-TRIS (PH 6.25) AND 0.8M REMARK 280 MAGNESIUM FORMATE DEHYDRATE, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 77.39800 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 44.68576 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 25.08000 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 77.39800 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 44.68576 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 25.08000 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 77.39800 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 44.68576 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 25.08000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 89.37151 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 50.16000 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 89.37151 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 50.16000 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 89.37151 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 50.16000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 80 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7720 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7850 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7290 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 157 REMARK 465 HIS A 158 REMARK 465 HIS A 159 REMARK 465 HIS A 160 REMARK 465 HIS B 157 REMARK 465 HIS B 158 REMARK 465 HIS B 159 REMARK 465 HIS B 160 REMARK 465 ALA C 151 REMARK 465 ALA C 152 REMARK 465 LEU C 153 REMARK 465 GLU C 154 REMARK 465 HIS C 155 REMARK 465 HIS C 156 REMARK 465 HIS C 157 REMARK 465 HIS C 158 REMARK 465 HIS C 159 REMARK 465 HIS C 160 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 142 CD OE1 OE2 REMARK 470 GLU A 154 CD OE1 OE2 REMARK 470 HIS A 156 CG ND1 CD2 CE1 NE2 REMARK 470 ALA B 152 C REMARK 470 HIS B 155 ND1 CD2 CE1 NE2 REMARK 470 GLU C 20 CD OE1 OE2 REMARK 470 GLU C 81 CD OE1 OE2 REMARK 470 ARG C 127 NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ALA B 152 N LEU B 153 1.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLU A 80 NE2 HIS B 156 5445 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 VAL B 139 CB - CA - C ANGL. DEV. = -13.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 93 -142.90 -111.51 REMARK 500 LEU A 97 -86.96 -122.31 REMARK 500 VAL A 131 98.79 65.77 REMARK 500 ARG B 21 -45.98 -27.78 REMARK 500 CYS B 93 -146.96 -120.06 REMARK 500 LEU B 97 -89.33 -121.42 REMARK 500 VAL B 131 108.59 61.63 REMARK 500 SER C 68 -179.74 -66.20 REMARK 500 CYS C 93 -160.70 -122.82 REMARK 500 MET C 94 -73.11 -74.83 REMARK 500 LEU C 97 -75.41 -144.94 REMARK 500 VAL C 131 107.36 59.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT C 201 DBREF 5Z5B A 1 147 UNP Q8X270 Q8X270_THEKO 1 147 DBREF 5Z5B B 1 147 UNP Q8X270 Q8X270_THEKO 1 147 DBREF 5Z5B C 1 147 UNP Q8X270 Q8X270_THEKO 1 147 SEQADV 5Z5B ALA A 95 UNP Q8X270 GLY 95 ENGINEERED MUTATION SEQADV 5Z5B LYS A 148 UNP Q8X270 EXPRESSION TAG SEQADV 5Z5B LEU A 149 UNP Q8X270 EXPRESSION TAG SEQADV 5Z5B ALA A 150 UNP Q8X270 EXPRESSION TAG SEQADV 5Z5B ALA A 151 UNP Q8X270 EXPRESSION TAG SEQADV 5Z5B ALA A 152 UNP Q8X270 EXPRESSION TAG SEQADV 5Z5B LEU A 153 UNP Q8X270 EXPRESSION TAG SEQADV 5Z5B GLU A 154 UNP Q8X270 EXPRESSION TAG SEQADV 5Z5B HIS A 155 UNP Q8X270 EXPRESSION TAG SEQADV 5Z5B HIS A 156 UNP Q8X270 EXPRESSION TAG SEQADV 5Z5B HIS A 157 UNP Q8X270 EXPRESSION TAG SEQADV 5Z5B HIS A 158 UNP Q8X270 EXPRESSION TAG SEQADV 5Z5B HIS A 159 UNP Q8X270 EXPRESSION TAG SEQADV 5Z5B HIS A 160 UNP Q8X270 EXPRESSION TAG SEQADV 5Z5B ALA B 95 UNP Q8X270 GLY 95 ENGINEERED MUTATION SEQADV 5Z5B LYS B 148 UNP Q8X270 EXPRESSION TAG SEQADV 5Z5B LEU B 149 UNP Q8X270 EXPRESSION TAG SEQADV 5Z5B ALA B 150 UNP Q8X270 EXPRESSION TAG SEQADV 5Z5B ALA B 151 UNP Q8X270 EXPRESSION TAG SEQADV 5Z5B ALA B 152 UNP Q8X270 EXPRESSION TAG SEQADV 5Z5B LEU B 153 UNP Q8X270 EXPRESSION TAG SEQADV 5Z5B GLU B 154 UNP Q8X270 EXPRESSION TAG SEQADV 5Z5B HIS B 155 UNP Q8X270 EXPRESSION TAG SEQADV 5Z5B HIS B 156 UNP Q8X270 EXPRESSION TAG SEQADV 5Z5B HIS B 157 UNP Q8X270 EXPRESSION TAG SEQADV 5Z5B HIS B 158 UNP Q8X270 EXPRESSION TAG SEQADV 5Z5B HIS B 159 UNP Q8X270 EXPRESSION TAG SEQADV 5Z5B HIS B 160 UNP Q8X270 EXPRESSION TAG SEQADV 5Z5B ALA C 95 UNP Q8X270 GLY 95 ENGINEERED MUTATION SEQADV 5Z5B LYS C 148 UNP Q8X270 EXPRESSION TAG SEQADV 5Z5B LEU C 149 UNP Q8X270 EXPRESSION TAG SEQADV 5Z5B ALA C 150 UNP Q8X270 EXPRESSION TAG SEQADV 5Z5B ALA C 151 UNP Q8X270 EXPRESSION TAG SEQADV 5Z5B ALA C 152 UNP Q8X270 EXPRESSION TAG SEQADV 5Z5B LEU C 153 UNP Q8X270 EXPRESSION TAG SEQADV 5Z5B GLU C 154 UNP Q8X270 EXPRESSION TAG SEQADV 5Z5B HIS C 155 UNP Q8X270 EXPRESSION TAG SEQADV 5Z5B HIS C 156 UNP Q8X270 EXPRESSION TAG SEQADV 5Z5B HIS C 157 UNP Q8X270 EXPRESSION TAG SEQADV 5Z5B HIS C 158 UNP Q8X270 EXPRESSION TAG SEQADV 5Z5B HIS C 159 UNP Q8X270 EXPRESSION TAG SEQADV 5Z5B HIS C 160 UNP Q8X270 EXPRESSION TAG SEQRES 1 A 160 MET TRP PRO SER ALA LYS PHE ILE ASP GLY ARG VAL ALA SEQRES 2 A 160 PHE SER ARG MET PRO ALA GLU ARG GLU LEU ASP GLU VAL SEQRES 3 A 160 ALA ARG ASP PHE ASP ALA VAL VAL VAL LEU VAL GLU ASP SEQRES 4 A 160 TYR GLU LEU PRO TYR SER LEU ASP GLU TRP GLU LYS ARG SEQRES 5 A 160 GLY VAL GLU VAL LEU HIS GLY PRO ILE PRO ASP PHE THR SEQRES 6 A 160 ALA PRO SER VAL GLU GLN LEU LEU GLU ILE LEU ARG TRP SEQRES 7 A 160 ILE GLU GLU ARG VAL ARG GLU GLY LYS LYS VAL LEU ILE SEQRES 8 A 160 HIS CYS MET ALA GLY LEU GLY ARG SER GLY THR VAL GLY SEQRES 9 A 160 VAL ALA TRP LEU MET TYR SER ARG GLY LEU SER LEU ARG SEQRES 10 A 160 GLU ALA LEU MET GLU VAL ARG ARG LYS ARG PRO GLY ALA SEQRES 11 A 160 VAL GLU THR GLN GLU GLN MET GLU VAL LEU LYS GLU LEU SEQRES 12 A 160 GLU GLU ARG ILE LYS LEU ALA ALA ALA LEU GLU HIS HIS SEQRES 13 A 160 HIS HIS HIS HIS SEQRES 1 B 160 MET TRP PRO SER ALA LYS PHE ILE ASP GLY ARG VAL ALA SEQRES 2 B 160 PHE SER ARG MET PRO ALA GLU ARG GLU LEU ASP GLU VAL SEQRES 3 B 160 ALA ARG ASP PHE ASP ALA VAL VAL VAL LEU VAL GLU ASP SEQRES 4 B 160 TYR GLU LEU PRO TYR SER LEU ASP GLU TRP GLU LYS ARG SEQRES 5 B 160 GLY VAL GLU VAL LEU HIS GLY PRO ILE PRO ASP PHE THR SEQRES 6 B 160 ALA PRO SER VAL GLU GLN LEU LEU GLU ILE LEU ARG TRP SEQRES 7 B 160 ILE GLU GLU ARG VAL ARG GLU GLY LYS LYS VAL LEU ILE SEQRES 8 B 160 HIS CYS MET ALA GLY LEU GLY ARG SER GLY THR VAL GLY SEQRES 9 B 160 VAL ALA TRP LEU MET TYR SER ARG GLY LEU SER LEU ARG SEQRES 10 B 160 GLU ALA LEU MET GLU VAL ARG ARG LYS ARG PRO GLY ALA SEQRES 11 B 160 VAL GLU THR GLN GLU GLN MET GLU VAL LEU LYS GLU LEU SEQRES 12 B 160 GLU GLU ARG ILE LYS LEU ALA ALA ALA LEU GLU HIS HIS SEQRES 13 B 160 HIS HIS HIS HIS SEQRES 1 C 160 MET TRP PRO SER ALA LYS PHE ILE ASP GLY ARG VAL ALA SEQRES 2 C 160 PHE SER ARG MET PRO ALA GLU ARG GLU LEU ASP GLU VAL SEQRES 3 C 160 ALA ARG ASP PHE ASP ALA VAL VAL VAL LEU VAL GLU ASP SEQRES 4 C 160 TYR GLU LEU PRO TYR SER LEU ASP GLU TRP GLU LYS ARG SEQRES 5 C 160 GLY VAL GLU VAL LEU HIS GLY PRO ILE PRO ASP PHE THR SEQRES 6 C 160 ALA PRO SER VAL GLU GLN LEU LEU GLU ILE LEU ARG TRP SEQRES 7 C 160 ILE GLU GLU ARG VAL ARG GLU GLY LYS LYS VAL LEU ILE SEQRES 8 C 160 HIS CYS MET ALA GLY LEU GLY ARG SER GLY THR VAL GLY SEQRES 9 C 160 VAL ALA TRP LEU MET TYR SER ARG GLY LEU SER LEU ARG SEQRES 10 C 160 GLU ALA LEU MET GLU VAL ARG ARG LYS ARG PRO GLY ALA SEQRES 11 C 160 VAL GLU THR GLN GLU GLN MET GLU VAL LEU LYS GLU LEU SEQRES 12 C 160 GLU GLU ARG ILE LYS LEU ALA ALA ALA LEU GLU HIS HIS SEQRES 13 C 160 HIS HIS HIS HIS HET CL A 201 1 HET FMT A 202 3 HET CL B 201 1 HET FMT B 202 3 HET FMT C 201 3 HETNAM CL CHLORIDE ION HETNAM FMT FORMIC ACID FORMUL 4 CL 2(CL 1-) FORMUL 5 FMT 3(C H2 O2) HELIX 1 AA1 ALA A 19 ARG A 21 5 3 HELIX 2 AA2 GLU A 22 PHE A 30 1 9 HELIX 3 AA3 GLU A 38 LEU A 42 5 5 HELIX 4 AA4 LEU A 46 ARG A 52 1 7 HELIX 5 AA5 SER A 68 GLU A 85 1 18 HELIX 6 AA6 LEU A 97 GLY A 113 1 17 HELIX 7 AA7 SER A 115 ARG A 127 1 13 HELIX 8 AA8 THR A 133 HIS A 156 1 24 HELIX 9 AA9 ALA B 19 ARG B 21 5 3 HELIX 10 AB1 GLU B 22 PHE B 30 1 9 HELIX 11 AB2 GLU B 38 LEU B 42 5 5 HELIX 12 AB3 LEU B 46 ARG B 52 1 7 HELIX 13 AB4 SER B 68 GLU B 85 1 18 HELIX 14 AB5 LEU B 97 GLY B 113 1 17 HELIX 15 AB6 SER B 115 ARG B 127 1 13 HELIX 16 AB7 THR B 133 ALA B 152 1 20 HELIX 17 AB8 GLU B 154 HIS B 155 1 2 HELIX 18 AB9 ALA C 19 ARG C 21 5 3 HELIX 19 AC1 GLU C 22 PHE C 30 1 9 HELIX 20 AC2 GLU C 38 LEU C 42 5 5 HELIX 21 AC3 LEU C 46 LYS C 51 1 6 HELIX 22 AC4 SER C 68 GLU C 85 1 18 HELIX 23 AC5 LEU C 97 ARG C 112 1 16 HELIX 24 AC6 SER C 115 ARG C 125 1 11 HELIX 25 AC7 THR C 133 ALA C 150 1 18 SHEET 1 AA1 5 LYS A 6 PHE A 7 0 SHEET 2 AA1 5 VAL A 12 SER A 15 -1 O PHE A 14 N LYS A 6 SHEET 3 AA1 5 VAL A 89 HIS A 92 1 O ILE A 91 N ALA A 13 SHEET 4 AA1 5 ALA A 32 VAL A 35 1 N VAL A 34 O HIS A 92 SHEET 5 AA1 5 GLU A 55 HIS A 58 1 O GLU A 55 N VAL A 33 SHEET 1 AA2 5 LYS B 6 PHE B 7 0 SHEET 2 AA2 5 VAL B 12 SER B 15 -1 O PHE B 14 N LYS B 6 SHEET 3 AA2 5 VAL B 89 HIS B 92 1 O VAL B 89 N ALA B 13 SHEET 4 AA2 5 ALA B 32 VAL B 35 1 N VAL B 34 O LEU B 90 SHEET 5 AA2 5 GLU B 55 HIS B 58 1 O LEU B 57 N VAL B 35 SHEET 1 AA3 5 ALA C 5 PHE C 7 0 SHEET 2 AA3 5 VAL C 12 SER C 15 -1 O PHE C 14 N LYS C 6 SHEET 3 AA3 5 VAL C 89 HIS C 92 1 O VAL C 89 N ALA C 13 SHEET 4 AA3 5 ALA C 32 VAL C 35 1 N VAL C 34 O LEU C 90 SHEET 5 AA3 5 GLU C 55 HIS C 58 1 O LEU C 57 N VAL C 35 SITE 1 AC1 1 ARG A 146 SITE 1 AC2 7 ASP A 63 CYS A 93 MET A 94 ALA A 95 SITE 2 AC2 7 GLY A 98 ARG A 99 ARG C 117 SITE 1 AC3 1 TYR B 110 SITE 1 AC4 6 ARG A 117 ASP B 63 CYS B 93 MET B 94 SITE 2 AC4 6 ALA B 95 ARG B 99 SITE 1 AC5 8 ARG B 117 ASP C 63 CYS C 93 MET C 94 SITE 2 AC5 8 ALA C 95 GLY C 96 GLY C 98 ARG C 99 CRYST1 154.796 154.796 75.240 90.00 90.00 120.00 H 3 27 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006460 0.003730 0.000000 0.00000 SCALE2 0.000000 0.007459 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013291 0.00000