data_5Z5R # _entry.id 5Z5R # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.370 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5Z5R pdb_00005z5r 10.2210/pdb5z5r/pdb WWPDB D_1300006017 ? ? BMRB 36158 ? ? # _pdbx_database_related.db_name BMRB _pdbx_database_related.details 'Nukacin ISK-1 in inactive state' _pdbx_database_related.db_id 36158 _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.entry_id 5Z5R _pdbx_database_status.recvd_initial_deposition_date 2018-01-19 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data REL # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Kohda, D.' 1 ? 'Fujinami, D.' 2 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Commun Biol' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2399-3642 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 1 _citation.language ? _citation.page_first 150 _citation.page_last 150 _citation.title 'The lantibiotic nukacin ISK-1 exists in an equilibrium between active and inactive lipid-II binding states.' _citation.year 2018 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/s42003-018-0150-3 _citation.pdbx_database_id_PubMed 30272026 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Fujinami, D.' 1 0000-0002-6763-2577 primary 'Mahin, A.A.' 2 ? primary 'Elsayed, K.M.' 3 ? primary 'Islam, M.R.' 4 ? primary 'Nagao, J.I.' 5 ? primary 'Roy, U.' 6 ? primary 'Momin, S.' 7 ? primary 'Zendo, T.' 8 ? primary 'Kohda, D.' 9 0000-0001-8234-3776 primary 'Sonomoto, K.' 10 ? # _entity.id 1 _entity.type polymer _entity.src_method nat _entity.pdbx_description 'Lantibiotic nukacin' _entity.formula_weight 2970.535 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Bacteriocin ISK-1' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code 'KKKSGVIP(DBB)V(DAL)HDCHMN(DAL)FQFVF(DBU)CCS' _entity_poly.pdbx_seq_one_letter_code_can KKKSGVIPTVAHDCHMNAFQFVFTCCS _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 LYS n 1 2 LYS n 1 3 LYS n 1 4 SER n 1 5 GLY n 1 6 VAL n 1 7 ILE n 1 8 PRO n 1 9 DBB n 1 10 VAL n 1 11 DAL n 1 12 HIS n 1 13 ASP n 1 14 CYS n 1 15 HIS n 1 16 MET n 1 17 ASN n 1 18 DAL n 1 19 PHE n 1 20 GLN n 1 21 PHE n 1 22 VAL n 1 23 PHE n 1 24 DBU n 1 25 CYS n 1 26 CYS n 1 27 SER n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num 1 _entity_src_nat.pdbx_end_seq_num 27 _entity_src_nat.common_name ? _entity_src_nat.pdbx_organism_scientific 'Staphylococcus warneri' _entity_src_nat.pdbx_ncbi_taxonomy_id 1292 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code LANNA_STAWA _struct_ref.pdbx_db_accession Q9KWM4 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code KKKSGVIPTVSHDCHMNSFQFVFTCCS _struct_ref.pdbx_align_begin 31 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 5Z5R _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 27 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9KWM4 _struct_ref_seq.db_align_beg 31 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 57 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 27 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 5Z5R DBB A 9 ? UNP Q9KWM4 THR 39 'see sequence details' 9 1 1 5Z5R DAL A 11 ? UNP Q9KWM4 SER 41 'see sequence details' 11 2 1 5Z5R DAL A 18 ? UNP Q9KWM4 SER 48 'see sequence details' 18 3 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DAL 'D-peptide linking' . D-ALANINE ? 'C3 H7 N O2' 89.093 DBB 'D-peptide linking' . 'D-ALPHA-AMINOBUTYRIC ACID' ? 'C4 H9 N O2' 103.120 DBU 'peptide linking' n '(2Z)-2-AMINOBUT-2-ENOIC ACID' Z-DEHYDROBUTYRINE 'C4 H7 N O2' 101.104 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 1 1 '2D 1H-1H TOCSY' 1 isotropic 2 1 1 '2D 1H-1H NOESY' 1 isotropic # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 283 _pdbx_nmr_exptl_sample_conditions.pressure_units Pa _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 6.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength 0 _pdbx_nmr_exptl_sample_conditions.details ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_err ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_units mM _pdbx_nmr_exptl_sample_conditions.label conditions_1 _pdbx_nmr_exptl_sample_conditions.pH_err ? _pdbx_nmr_exptl_sample_conditions.pH_units pH _pdbx_nmr_exptl_sample_conditions.pressure_err ? _pdbx_nmr_exptl_sample_conditions.temperature_err ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '1.1 mM nukacin ISK-1, 10 mM sodium phosphate, 90% H2O/10% D2O' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' _pdbx_nmr_sample_details.label 'natural abundance' _pdbx_nmr_sample_details.type solution _pdbx_nmr_sample_details.details ? # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model AVANCE _pdbx_nmr_spectrometer.type ? _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 700 _pdbx_nmr_spectrometer.details ? # _pdbx_nmr_refine.details ? _pdbx_nmr_refine.entry_id 5Z5R _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 5Z5R _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'target function' # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 5Z5R _pdbx_nmr_representative.selection_criteria 'target function' # _pdbx_nmr_software.name CYANA _pdbx_nmr_software.version ? _pdbx_nmr_software.classification refinement _pdbx_nmr_software.authors 'Guntert P.' _pdbx_nmr_software.ordinal 1 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5Z5R _exptl.crystals_number ? _exptl.details ? _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 5Z5R _struct.title 'Nukacin ISK-1 in inactive state' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5Z5R _struct_keywords.text 'lantibiotics, ANTIBIOTIC' _struct_keywords.pdbx_keywords ANTIBIOTIC # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale one ? A PRO 8 C ? ? ? 1_555 A DBB 9 N ? ? A PRO 8 A DBB 9 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale2 covale both ? A DBB 9 C ? ? ? 1_555 A VAL 10 N ? ? A DBB 9 A VAL 10 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale3 covale both ? A VAL 10 C ? ? ? 1_555 A DAL 11 N ? ? A VAL 10 A DAL 11 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale4 covale both ? A DAL 11 C ? ? ? 1_555 A HIS 12 N ? ? A DAL 11 A HIS 12 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale5 covale both ? A ASN 17 C ? ? ? 1_555 A DAL 18 N ? ? A ASN 17 A DAL 18 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale6 covale both ? A DAL 18 C ? ? ? 1_555 A PHE 19 N ? ? A DAL 18 A PHE 19 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale7 covale none ? A DAL 18 CB ? ? ? 1_555 A CYS 26 SG ? ? A DAL 18 A CYS 26 1_555 ? ? ? ? ? ? ? 1.830 ? ? covale8 covale both ? A PHE 23 C ? ? ? 1_555 A DBU 24 N ? ? A PHE 23 A DBU 24 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale9 covale both ? A DBU 24 C ? ? ? 1_555 A CYS 25 N ? ? A DBU 24 A CYS 25 1_555 ? ? ? ? ? ? ? 1.328 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _atom_sites.entry_id 5Z5R _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 LYS 1 1 1 LYS LYS A . n A 1 2 LYS 2 2 2 LYS LYS A . n A 1 3 LYS 3 3 3 LYS LYS A . n A 1 4 SER 4 4 4 SER SER A . n A 1 5 GLY 5 5 5 GLY GLY A . n A 1 6 VAL 6 6 6 VAL VAL A . n A 1 7 ILE 7 7 7 ILE ILE A . n A 1 8 PRO 8 8 8 PRO PRO A . n A 1 9 DBB 9 9 9 DBB DBB A . n A 1 10 VAL 10 10 10 VAL VAL A . n A 1 11 DAL 11 11 11 DAL DAL A . n A 1 12 HIS 12 12 12 HIS HIS A . n A 1 13 ASP 13 13 13 ASP ASP A . n A 1 14 CYS 14 14 14 CYS CYS A . n A 1 15 HIS 15 15 15 HIS HIS A . n A 1 16 MET 16 16 16 MET MET A . n A 1 17 ASN 17 17 17 ASN ASN A . n A 1 18 DAL 18 18 18 DAL DAL A . n A 1 19 PHE 19 19 19 PHE PHE A . n A 1 20 GLN 20 20 20 GLN GLN A . n A 1 21 PHE 21 21 21 PHE PHE A . n A 1 22 VAL 22 22 22 VAL VAL A . n A 1 23 PHE 23 23 23 PHE PHE A . n A 1 24 DBU 24 24 24 DBU DBU A . n A 1 25 CYS 25 25 25 CYS CYS A . n A 1 26 CYS 26 26 26 CYS CYS A . n A 1 27 SER 27 27 27 SER SER A . n # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id DBU _pdbx_struct_mod_residue.label_seq_id 24 _pdbx_struct_mod_residue.auth_asym_id A _pdbx_struct_mod_residue.auth_comp_id DBU _pdbx_struct_mod_residue.auth_seq_id 24 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id THR _pdbx_struct_mod_residue.details 'modified residue' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 0 ? 1 MORE 0 ? 1 'SSA (A^2)' 2720 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2018-11-28 2 'Structure model' 1 1 2023-06-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Derived calculations' 4 2 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' database_2 2 2 'Structure model' pdbx_database_status 3 2 'Structure model' pdbx_nmr_spectrometer 4 2 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_database_2.pdbx_DOI' 2 2 'Structure model' '_database_2.pdbx_database_accession' 3 2 'Structure model' '_pdbx_database_status.status_code_nmr_data' 4 2 'Structure model' '_pdbx_nmr_spectrometer.model' 5 2 'Structure model' '_struct_conn.pdbx_dist_value' 6 2 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 7 2 'Structure model' '_struct_conn.ptnr1_label_atom_id' 8 2 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 9 2 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 10 2 'Structure model' '_struct_conn.ptnr2_label_atom_id' 11 2 'Structure model' '_struct_conn.ptnr2_label_comp_id' 12 2 'Structure model' '_struct_conn.ptnr2_label_seq_id' # _pdbx_entry_details.compound_details ? _pdbx_entry_details.entry_id 5Z5R _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details 'THR39, SER41, AND SER48 ARE DEHYDRATED TO DBB39, DAL41 AND DAL48 BY POSTTRANSLATIONAL MODIFICATIONS.' _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_nmr_exptl_sample.solution_id _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling 1 'nukacin ISK-1' 1.1 ? mM 'natural abundance' 1 'sodium phosphate' 10 ? mM 'natural abundance' # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 CB A DBB 9 ? ? SG A CYS 14 ? ? 2.12 2 1 CB A DAL 11 ? ? SG A CYS 25 ? ? 2.18 3 2 CB A DBB 9 ? ? SG A CYS 14 ? ? 1.87 4 2 CB A DAL 11 ? ? SG A CYS 25 ? ? 2.17 5 3 CB A DBB 9 ? ? SG A CYS 14 ? ? 1.86 6 3 CB A DAL 11 ? ? SG A CYS 25 ? ? 1.96 7 4 CB A DBB 9 ? ? SG A CYS 14 ? ? 1.98 8 4 CB A DAL 11 ? ? SG A CYS 25 ? ? 2.10 9 5 CB A DBB 9 ? ? SG A CYS 14 ? ? 1.93 10 5 CB A DAL 11 ? ? SG A CYS 25 ? ? 2.19 11 6 CB A DBB 9 ? ? SG A CYS 14 ? ? 1.89 12 6 CB A DAL 11 ? ? SG A CYS 25 ? ? 2.15 13 7 CB A DBB 9 ? ? SG A CYS 14 ? ? 1.90 14 7 CB A DAL 11 ? ? SG A CYS 25 ? ? 2.12 15 8 CB A DBB 9 ? ? SG A CYS 14 ? ? 1.87 16 8 CB A DAL 11 ? ? SG A CYS 25 ? ? 2.17 17 9 CB A DBB 9 ? ? SG A CYS 14 ? ? 1.92 18 9 CB A DAL 11 ? ? SG A CYS 25 ? ? 2.16 19 10 CB A DBB 9 ? ? SG A CYS 14 ? ? 1.91 20 10 CB A DAL 11 ? ? SG A CYS 25 ? ? 2.14 21 11 CB A DBB 9 ? ? SG A CYS 14 ? ? 2.07 22 12 CB A DBB 9 ? ? SG A CYS 14 ? ? 1.86 23 12 CB A DAL 11 ? ? SG A CYS 25 ? ? 2.19 24 13 CB A DBB 9 ? ? SG A CYS 14 ? ? 1.93 25 13 CB A DAL 11 ? ? SG A CYS 25 ? ? 2.15 26 14 CB A DAL 11 ? ? SG A CYS 25 ? ? 1.91 27 14 CB A DBB 9 ? ? SG A CYS 14 ? ? 1.99 28 15 CB A DBB 9 ? ? SG A CYS 14 ? ? 1.82 29 16 CB A DBB 9 ? ? SG A CYS 14 ? ? 1.84 30 17 CB A DBB 9 ? ? SG A CYS 14 ? ? 2.12 31 18 CB A DBB 9 ? ? SG A CYS 14 ? ? 1.84 32 18 CB A DAL 11 ? ? SG A CYS 25 ? ? 1.93 33 19 CB A DBB 9 ? ? SG A CYS 14 ? ? 1.83 34 20 CB A DBB 9 ? ? SG A CYS 14 ? ? 1.87 35 20 CB A DAL 11 ? ? SG A CYS 25 ? ? 1.97 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS A 3 ? ? -52.02 109.13 2 1 SER A 4 ? ? -128.66 -52.63 3 1 VAL A 6 ? ? -62.74 -78.16 4 1 DAL A 11 ? ? -59.87 -168.57 5 1 HIS A 15 ? ? -140.32 54.44 6 1 MET A 16 ? ? 65.29 79.60 7 1 ASN A 17 ? ? -134.74 -75.41 8 1 DAL A 18 ? ? 76.41 71.03 9 1 PHE A 23 ? ? -174.52 31.90 10 2 LYS A 2 ? ? -127.19 -52.16 11 2 VAL A 6 ? ? -80.72 -80.47 12 2 PRO A 8 ? ? -69.76 98.14 13 2 DAL A 11 ? ? -61.44 -159.13 14 2 DAL A 18 ? ? 126.64 72.81 15 2 PHE A 23 ? ? -174.83 38.57 16 3 LYS A 3 ? ? 57.76 -179.42 17 3 SER A 4 ? ? -134.20 -72.74 18 3 VAL A 6 ? ? -73.87 -71.75 19 3 PRO A 8 ? ? -69.80 95.49 20 3 DBB A 9 ? ? 131.90 44.30 21 3 DAL A 11 ? ? -62.19 -160.92 22 3 CYS A 14 ? ? 51.07 88.65 23 3 HIS A 15 ? ? -128.73 -78.49 24 3 MET A 16 ? ? 176.51 127.25 25 3 ASN A 17 ? ? -179.48 -79.95 26 3 PHE A 19 ? ? -137.95 -59.10 27 3 CYS A 25 ? ? -64.52 -167.82 28 3 CYS A 26 ? ? -160.98 64.28 29 4 VAL A 6 ? ? -50.13 -82.69 30 4 DAL A 11 ? ? -60.13 -167.68 31 4 ASP A 13 ? ? -177.95 43.33 32 4 HIS A 15 ? ? -129.12 -68.05 33 4 MET A 16 ? ? -179.09 115.62 34 4 ASN A 17 ? ? -155.11 -75.08 35 4 GLN A 20 ? ? -178.72 133.15 36 4 PHE A 23 ? ? -172.80 30.53 37 5 LYS A 3 ? ? -179.31 113.55 38 5 VAL A 6 ? ? -141.10 -72.71 39 5 DAL A 11 ? ? -61.05 -160.43 40 5 ASP A 13 ? ? -179.73 33.94 41 5 CYS A 14 ? ? -67.62 99.38 42 5 HIS A 15 ? ? -117.74 63.34 43 5 MET A 16 ? ? -144.54 -77.74 44 5 ASN A 17 ? ? 177.36 174.72 45 5 DAL A 18 ? ? -68.46 75.34 46 5 PHE A 23 ? ? -152.51 22.42 47 6 LYS A 3 ? ? 59.64 -177.50 48 6 DAL A 11 ? ? -61.35 -163.31 49 6 HIS A 15 ? ? -138.97 -74.95 50 6 MET A 16 ? ? 179.91 129.47 51 6 ASN A 17 ? ? -179.07 -76.52 52 6 GLN A 20 ? ? 179.50 143.34 53 6 PHE A 23 ? ? -171.94 35.24 54 7 LYS A 2 ? ? -177.87 -43.95 55 7 SER A 4 ? ? -156.50 -67.85 56 7 VAL A 6 ? ? -113.01 -166.71 57 7 DAL A 11 ? ? -61.84 -107.95 58 7 ASP A 13 ? ? -171.86 93.77 59 7 HIS A 15 ? ? -140.09 32.73 60 7 MET A 16 ? ? 64.88 72.93 61 7 ASN A 17 ? ? -138.73 -71.48 62 7 DAL A 18 ? ? 86.50 71.65 63 7 PHE A 23 ? ? -174.58 32.04 64 8 LYS A 3 ? ? -179.39 -37.46 65 8 DAL A 11 ? ? -61.13 -164.50 66 8 CYS A 14 ? ? 61.35 102.44 67 8 HIS A 15 ? ? -133.46 -76.96 68 8 MET A 16 ? ? 178.26 104.88 69 8 ASN A 17 ? ? -174.71 48.09 70 8 DAL A 18 ? ? -71.01 70.82 71 8 GLN A 20 ? ? -173.87 146.40 72 8 PHE A 23 ? ? -157.48 29.43 73 9 VAL A 6 ? ? -80.84 -77.97 74 9 PRO A 8 ? ? -69.71 96.19 75 9 DAL A 11 ? ? -62.92 -135.39 76 9 ASP A 13 ? ? 77.17 -52.73 77 9 CYS A 14 ? ? 66.08 124.63 78 9 HIS A 15 ? ? -140.09 -67.84 79 9 MET A 16 ? ? -180.00 112.76 80 9 ASN A 17 ? ? 179.77 -167.81 81 9 DAL A 18 ? ? 147.66 71.67 82 9 PHE A 23 ? ? -174.68 41.51 83 10 SER A 4 ? ? 53.12 -171.12 84 10 VAL A 6 ? ? -53.93 -75.78 85 10 PRO A 8 ? ? -69.75 75.23 86 10 DBB A 9 ? ? 132.42 48.16 87 10 DAL A 11 ? ? -62.54 -115.44 88 10 HIS A 12 ? ? -140.76 -41.99 89 10 CYS A 14 ? ? 66.04 77.18 90 10 MET A 16 ? ? -176.26 -77.96 91 10 ASN A 17 ? ? 179.28 -64.97 92 10 DAL A 18 ? ? 130.08 74.33 93 10 PHE A 19 ? ? -158.78 36.21 94 10 GLN A 20 ? ? 179.94 118.97 95 10 PHE A 23 ? ? 179.43 34.56 96 11 SER A 4 ? ? 61.58 167.99 97 11 DAL A 11 ? ? -59.01 -173.52 98 11 MET A 16 ? ? 60.35 97.19 99 11 ASN A 17 ? ? -159.55 -76.76 100 11 GLN A 20 ? ? -179.72 133.49 101 11 PHE A 23 ? ? -174.96 32.07 102 12 LYS A 2 ? ? -138.80 -69.65 103 12 VAL A 6 ? ? -150.20 -81.49 104 12 PRO A 8 ? ? -69.80 71.18 105 12 DBB A 9 ? ? 129.06 59.81 106 12 DAL A 11 ? ? -62.20 -118.50 107 12 HIS A 15 ? ? -140.74 47.18 108 12 MET A 16 ? ? 66.38 99.64 109 12 ASN A 17 ? ? 179.90 -171.45 110 12 DAL A 18 ? ? 143.68 73.56 111 12 PHE A 23 ? ? -175.17 32.15 112 13 SER A 4 ? ? 59.00 -172.52 113 13 VAL A 6 ? ? -85.05 -79.21 114 13 PRO A 8 ? ? -69.73 88.53 115 13 DBB A 9 ? ? 138.30 42.00 116 13 DAL A 11 ? ? -62.44 -157.46 117 13 HIS A 15 ? ? -133.69 -71.59 118 13 MET A 16 ? ? 178.82 -168.41 119 13 DAL A 18 ? ? -73.52 67.19 120 13 PHE A 19 ? ? -147.30 45.74 121 13 GLN A 20 ? ? 179.06 117.52 122 13 PHE A 23 ? ? -175.20 32.24 123 14 VAL A 6 ? ? -50.65 -81.29 124 14 PRO A 8 ? ? -69.77 78.73 125 14 DBB A 9 ? ? 138.36 52.90 126 14 HIS A 12 ? ? -140.40 -41.43 127 14 HIS A 15 ? ? -110.00 53.59 128 14 MET A 16 ? ? 50.90 87.95 129 14 ASN A 17 ? ? -167.71 -75.43 130 14 DAL A 18 ? ? 88.40 70.08 131 14 GLN A 20 ? ? -179.61 127.42 132 14 VAL A 22 ? ? -79.67 -73.72 133 15 LYS A 3 ? ? 61.83 177.28 134 15 VAL A 6 ? ? -53.76 -84.47 135 15 PRO A 8 ? ? -69.74 76.52 136 15 DBB A 9 ? ? 131.34 71.44 137 15 VAL A 10 ? ? -124.13 -94.82 138 15 DAL A 11 ? ? 39.94 -148.71 139 15 ASP A 13 ? ? -121.40 -58.20 140 15 CYS A 14 ? ? 63.64 146.82 141 15 HIS A 15 ? ? -131.40 -46.19 142 15 MET A 16 ? ? -173.12 -170.84 143 15 ASN A 17 ? ? 65.07 -167.14 144 15 DAL A 18 ? ? 145.35 71.60 145 15 PHE A 19 ? ? -140.69 31.48 146 15 GLN A 20 ? ? -179.34 125.78 147 15 PHE A 23 ? ? -152.62 20.31 148 16 LYS A 2 ? ? -171.95 -45.27 149 16 LYS A 3 ? ? 61.55 175.05 150 16 VAL A 6 ? ? -144.91 -83.60 151 16 DBB A 9 ? ? 109.76 67.32 152 16 VAL A 10 ? ? -135.58 -87.37 153 16 DAL A 11 ? ? 30.64 -134.42 154 16 CYS A 14 ? ? 63.45 141.64 155 16 HIS A 15 ? ? -120.37 -72.13 156 16 MET A 16 ? ? -179.29 65.77 157 16 DAL A 18 ? ? 151.52 72.29 158 16 PHE A 23 ? ? -166.25 28.14 159 17 LYS A 3 ? ? -52.21 109.72 160 17 VAL A 6 ? ? -50.07 -79.17 161 17 DAL A 11 ? ? -64.42 -161.45 162 17 ASP A 13 ? ? -93.63 -68.78 163 17 CYS A 14 ? ? 64.09 107.51 164 17 MET A 16 ? ? 65.29 113.28 165 17 ASN A 17 ? ? -178.55 -74.72 166 17 DAL A 18 ? ? 53.67 72.14 167 17 GLN A 20 ? ? -179.84 140.74 168 17 PHE A 23 ? ? -171.79 41.12 169 17 CYS A 26 ? ? -179.30 146.06 170 18 LYS A 2 ? ? 69.22 -75.39 171 18 VAL A 6 ? ? -106.52 -169.80 172 18 DAL A 11 ? ? -65.40 -138.12 173 18 ASP A 13 ? ? 67.01 133.16 174 18 HIS A 15 ? ? -103.74 -69.43 175 18 DAL A 18 ? ? 131.10 71.31 176 18 GLN A 20 ? ? -179.93 143.29 177 19 SER A 4 ? ? -91.80 -64.13 178 19 VAL A 6 ? ? -125.43 -83.71 179 19 PRO A 8 ? ? -69.79 98.41 180 19 VAL A 10 ? ? -138.94 -89.71 181 19 DAL A 11 ? ? 30.40 -134.07 182 19 CYS A 14 ? ? 58.22 97.43 183 19 MET A 16 ? ? 61.43 100.92 184 19 ASN A 17 ? ? -175.85 76.39 185 19 DAL A 18 ? ? -68.43 73.90 186 19 GLN A 20 ? ? 179.63 168.43 187 19 PHE A 21 ? ? -115.84 77.76 188 19 PHE A 23 ? ? -143.42 15.39 189 20 LYS A 2 ? ? -135.49 -63.01 190 20 SER A 4 ? ? -134.43 -71.14 191 20 VAL A 6 ? ? -49.97 -80.78 192 20 PRO A 8 ? ? -69.74 73.86 193 20 DBB A 9 ? ? 129.89 53.51 194 20 DAL A 11 ? ? -65.47 -152.54 195 20 HIS A 12 ? ? -99.53 -65.38 196 20 HIS A 15 ? ? -140.21 -44.36 197 20 MET A 16 ? ? -175.61 70.50 198 20 DAL A 18 ? ? 127.69 71.12 199 20 VAL A 22 ? ? -79.89 -74.30 # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'mass spectrometry' _pdbx_struct_assembly_auth_evidence.details ? #