HEADER SUGAR BINDING PROTEIN 22-JAN-18 5Z5Y TITLE CRYSTAL STRUCTURE OF CONA-R4M COMPND MOL_ID: 1; COMPND 2 MOLECULE: CONCANAVALIN-A; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: CON A; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CANAVALIA ENSIFORMIS; SOURCE 3 ORGANISM_COMMON: JACK BEAN; SOURCE 4 ORGANISM_TAXID: 3823; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CONA-R4M, SUGAR BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR G.S.CHEN,J.H.GAN,R.T.HU REVDAT 2 27-MAR-24 5Z5Y 1 LINK REVDAT 1 30-MAY-18 5Z5Y 0 JRNL AUTH R.T.HU,G.YANG,H.M.DING,J.B.MA,Y.Q.MA,J.H.GAN,G.S.CHEN JRNL TITL COMPETITION BETWEEN SUPRAMOLECULAR INTERACTION AND JRNL TITL 2 PROTEIN-PROTEIN INTERACTION IN PROTEIN JRNL TITL 3 CRYSTALLIZATION:EFFECTS OF CRYSTALLIZATION METHOD AND SMALL JRNL TITL 4 MOLECULAR BRIDGE JRNL REF IND ENG CHEM RES V. 57 6726 2018 JRNL REFN ISSN 0888-5885 JRNL DOI 10.1021/ACS.IECR.8B00657 REMARK 2 REMARK 2 RESOLUTION. 1.89 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0131 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.89 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 33322 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.244 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1086 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.89 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.94 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2394 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.68 REMARK 3 BIN R VALUE (WORKING SET) : 0.3070 REMARK 3 BIN FREE R VALUE SET COUNT : 69 REMARK 3 BIN FREE R VALUE : 0.3320 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3618 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 129 REMARK 3 SOLVENT ATOMS : 87 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.68 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.61000 REMARK 3 B22 (A**2) : 2.29000 REMARK 3 B33 (A**2) : -0.67000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.167 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.158 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.133 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.740 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.930 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3848 ; 0.017 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3528 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5250 ; 1.926 ; 1.978 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8152 ; 1.101 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 476 ; 8.341 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 158 ;38.481 ;24.937 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 580 ;15.975 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;18.588 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 592 ; 0.115 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4350 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 862 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1898 ; 3.566 ; 3.434 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1897 ; 3.563 ; 3.433 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2370 ; 5.474 ; 5.131 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2371 ; 5.473 ; 5.132 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1950 ; 3.963 ; 3.724 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1950 ; 3.962 ; 3.725 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2879 ; 5.869 ; 5.450 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4327 ; 8.196 ;27.988 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4308 ; 8.199 ;27.976 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5Z5Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-JAN-18. REMARK 100 THE DEPOSITION ID IS D_1300006531. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-OCT-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9716 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34408 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.890 REMARK 200 RESOLUTION RANGE LOW (A) : 39.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.89 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.94 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.94 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% POLYETHYLENE GLYCOL 6000, 20 MM REMARK 280 HEPES, 100 MM NACL, 5 MM CACL2, 5 MM MNCL2 PH 7.2, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 300K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 30.80000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 58.05500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.80000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 58.05500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2830 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19340 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -57.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10450 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33880 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -140.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 401 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 60 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 VAL A 64 CB - CA - C ANGL. DEV. = -12.8 DEGREES REMARK 500 ASP A 203 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 118 -58.06 -3.60 REMARK 500 HIS A 121 36.72 -140.22 REMARK 500 ASP A 203 155.76 -32.77 REMARK 500 SER A 225 35.31 -86.61 REMARK 500 ASN B 14 76.55 -102.95 REMARK 500 PRO B 20 175.34 -59.41 REMARK 500 GLU B 102 149.83 -170.41 REMARK 500 ASN B 118 -62.52 15.66 REMARK 500 HIS B 121 25.35 -146.19 REMARK 500 ASP B 151 -14.90 -46.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 302 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 8 OE2 REMARK 620 2 ASP A 10 OD2 94.6 REMARK 620 3 ASP A 19 OD1 173.4 91.9 REMARK 620 4 HIS A 24 NE2 89.1 81.8 90.7 REMARK 620 5 HOH A 413 O 88.1 174.7 85.4 93.6 REMARK 620 6 HOH A 414 O 88.9 90.7 92.2 172.1 93.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 303 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 10 OD1 REMARK 620 2 ASP A 10 OD2 53.2 REMARK 620 3 TYR A 12 O 74.6 111.6 REMARK 620 4 ASN A 14 OD1 147.8 158.8 81.1 REMARK 620 5 ASP A 19 OD2 109.8 76.9 84.4 88.1 REMARK 620 6 HOH A 417 O 73.0 109.9 89.7 86.2 172.4 REMARK 620 7 HOH A 437 O 113.7 74.9 171.7 91.2 92.4 92.8 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 302 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 8 OE2 REMARK 620 2 ASP B 10 OD2 99.2 REMARK 620 3 ASP B 19 OD1 164.3 96.1 REMARK 620 4 HIS B 24 NE2 92.2 86.3 92.3 REMARK 620 5 HOH B 411 O 88.2 96.3 86.6 177.2 REMARK 620 6 HOH B 418 O 84.6 175.3 80.4 90.7 86.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 303 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 10 OD1 REMARK 620 2 ASP B 10 OD2 53.4 REMARK 620 3 TYR B 12 O 77.1 112.1 REMARK 620 4 ASN B 14 OD1 147.0 159.5 79.6 REMARK 620 5 ASP B 19 OD2 111.5 76.3 84.2 88.7 REMARK 620 6 HOH B 415 O 115.5 78.1 167.4 88.5 91.5 REMARK 620 7 HOH B 421 O 74.8 113.7 89.6 82.1 169.7 92.9 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 2KO A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 2KO B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 303 DBREF 5Z5Y A 1 118 UNP P02866 CONA_CANEN 164 281 DBREF 5Z5Y A 119 237 UNP P02866 CONA_CANEN 30 148 DBREF 5Z5Y B 1 118 UNP P02866 CONA_CANEN 164 281 DBREF 5Z5Y B 119 237 UNP P02866 CONA_CANEN 30 148 SEQRES 1 A 237 ALA ASP THR ILE VAL ALA VAL GLU LEU ASP THR TYR PRO SEQRES 2 A 237 ASN THR ASP ILE GLY ASP PRO SER TYR PRO HIS ILE GLY SEQRES 3 A 237 ILE ASP ILE LYS SER VAL ARG SER LYS LYS THR ALA LYS SEQRES 4 A 237 TRP ASN MET GLN ASN GLY LYS VAL GLY THR ALA HIS ILE SEQRES 5 A 237 ILE TYR ASN SER VAL ASP LYS ARG LEU SER ALA VAL VAL SEQRES 6 A 237 SER TYR PRO ASN ALA ASP SER ALA THR VAL SER TYR ASP SEQRES 7 A 237 VAL ASP LEU ASP ASN VAL LEU PRO GLU TRP VAL ARG VAL SEQRES 8 A 237 GLY LEU SER ALA SER THR GLY LEU TYR LYS GLU THR ASN SEQRES 9 A 237 THR ILE LEU SER TRP SER PHE THR SER LYS LEU LYS SER SEQRES 10 A 237 ASN SER THR HIS GLU THR ASN ALA LEU HIS PHE MET PHE SEQRES 11 A 237 ASN GLN PHE SER LYS ASP GLN LYS ASP LEU ILE LEU GLN SEQRES 12 A 237 GLY ASP ALA THR THR GLY THR ASP GLY ASN LEU GLU LEU SEQRES 13 A 237 THR ARG VAL SER SER ASN GLY SER PRO GLN GLY SER SER SEQRES 14 A 237 VAL GLY ARG ALA LEU PHE TYR ALA PRO VAL HIS ILE TRP SEQRES 15 A 237 GLU SER SER ALA VAL VAL ALA SER PHE GLU ALA THR PHE SEQRES 16 A 237 THR PHE LEU ILE LYS SER PRO ASP SER HIS PRO ALA ASP SEQRES 17 A 237 GLY ILE ALA PHE PHE ILE SER ASN ILE ASP SER SER ILE SEQRES 18 A 237 PRO SER GLY SER THR GLY ARG LEU LEU GLY LEU PHE PRO SEQRES 19 A 237 ASP ALA ASN SEQRES 1 B 237 ALA ASP THR ILE VAL ALA VAL GLU LEU ASP THR TYR PRO SEQRES 2 B 237 ASN THR ASP ILE GLY ASP PRO SER TYR PRO HIS ILE GLY SEQRES 3 B 237 ILE ASP ILE LYS SER VAL ARG SER LYS LYS THR ALA LYS SEQRES 4 B 237 TRP ASN MET GLN ASN GLY LYS VAL GLY THR ALA HIS ILE SEQRES 5 B 237 ILE TYR ASN SER VAL ASP LYS ARG LEU SER ALA VAL VAL SEQRES 6 B 237 SER TYR PRO ASN ALA ASP SER ALA THR VAL SER TYR ASP SEQRES 7 B 237 VAL ASP LEU ASP ASN VAL LEU PRO GLU TRP VAL ARG VAL SEQRES 8 B 237 GLY LEU SER ALA SER THR GLY LEU TYR LYS GLU THR ASN SEQRES 9 B 237 THR ILE LEU SER TRP SER PHE THR SER LYS LEU LYS SER SEQRES 10 B 237 ASN SER THR HIS GLU THR ASN ALA LEU HIS PHE MET PHE SEQRES 11 B 237 ASN GLN PHE SER LYS ASP GLN LYS ASP LEU ILE LEU GLN SEQRES 12 B 237 GLY ASP ALA THR THR GLY THR ASP GLY ASN LEU GLU LEU SEQRES 13 B 237 THR ARG VAL SER SER ASN GLY SER PRO GLN GLY SER SER SEQRES 14 B 237 VAL GLY ARG ALA LEU PHE TYR ALA PRO VAL HIS ILE TRP SEQRES 15 B 237 GLU SER SER ALA VAL VAL ALA SER PHE GLU ALA THR PHE SEQRES 16 B 237 THR PHE LEU ILE LYS SER PRO ASP SER HIS PRO ALA ASP SEQRES 17 B 237 GLY ILE ALA PHE PHE ILE SER ASN ILE ASP SER SER ILE SEQRES 18 B 237 PRO SER GLY SER THR GLY ARG LEU LEU GLY LEU PHE PRO SEQRES 19 B 237 ASP ALA ASN HET 2KO A 301 62 HET MN A 302 1 HET CA A 303 1 HET CL A 304 1 HET 2KO B 301 62 HET MN B 302 1 HET CA B 303 1 HETNAM 2KO 2-{2-[2-(2-{4-[(ALPHA-D-MANNOPYRANOSYLOXY)METHYL]-1H-1, HETNAM 2 2KO 2,3-TRIAZOL-1-YL}ETHOXY)ETHOXY]ETHOXY}ETHYL 2-[3,6- HETNAM 3 2KO BIS(DIETHYLAMINO)-9H-XANTHEN-9-YL]BENZOATE HETNAM MN MANGANESE (II) ION HETNAM CA CALCIUM ION HETNAM CL CHLORIDE ION FORMUL 3 2KO 2(C45 H61 N5 O12) FORMUL 4 MN 2(MN 2+) FORMUL 5 CA 2(CA 2+) FORMUL 6 CL CL 1- FORMUL 10 HOH *87(H2 O) HELIX 1 AA1 ASN A 14 GLY A 18 5 5 HELIX 2 AA2 ASP A 80 LEU A 85 1 6 HELIX 3 AA3 THR A 226 LEU A 230 5 5 HELIX 4 AA4 ASN B 14 GLY B 18 5 5 HELIX 5 AA5 ASP B 80 LEU B 85 1 6 HELIX 6 AA6 THR B 226 LEU B 230 5 5 SHEET 1 AA1 7 LYS A 36 LYS A 39 0 SHEET 2 AA1 7 HIS A 24 ILE A 29 -1 N ILE A 25 O ALA A 38 SHEET 3 AA1 7 ILE A 4 ASP A 10 -1 N ALA A 6 O ASP A 28 SHEET 4 AA1 7 GLY A 209 SER A 215 -1 O ILE A 210 N LEU A 9 SHEET 5 AA1 7 TRP A 88 SER A 96 -1 N SER A 94 O ALA A 211 SHEET 6 AA1 7 VAL A 170 PHE A 175 -1 O ALA A 173 N LEU A 93 SHEET 7 AA1 7 LEU A 140 GLY A 144 -1 N ILE A 141 O LEU A 174 SHEET 1 AA2 6 LYS A 36 LYS A 39 0 SHEET 2 AA2 6 HIS A 24 ILE A 29 -1 N ILE A 25 O ALA A 38 SHEET 3 AA2 6 ILE A 4 ASP A 10 -1 N ALA A 6 O ASP A 28 SHEET 4 AA2 6 GLY A 209 SER A 215 -1 O ILE A 210 N LEU A 9 SHEET 5 AA2 6 TRP A 88 SER A 96 -1 N SER A 94 O ALA A 211 SHEET 6 AA2 6 VAL A 179 HIS A 180 -1 O VAL A 179 N VAL A 89 SHEET 1 AA312 ALA A 73 ASP A 78 0 SHEET 2 AA312 ARG A 60 SER A 66 -1 N LEU A 61 O TYR A 77 SHEET 3 AA312 VAL A 47 ASN A 55 -1 N ILE A 53 O SER A 62 SHEET 4 AA312 ALA A 186 LEU A 198 -1 O ALA A 193 N ILE A 52 SHEET 5 AA312 THR A 105 SER A 117 -1 N LYS A 116 O VAL A 188 SHEET 6 AA312 THR A 123 PHE A 130 -1 O ASN A 124 N LEU A 115 SHEET 7 AA312 THR B 123 PHE B 130 -1 O HIS B 127 N HIS A 127 SHEET 8 AA312 THR B 105 SER B 117 -1 N LEU B 115 O ASN B 124 SHEET 9 AA312 ALA B 186 LEU B 198 -1 O VAL B 188 N LYS B 116 SHEET 10 AA312 VAL B 47 ASN B 55 -1 N ILE B 52 O ALA B 193 SHEET 11 AA312 ARG B 60 SER B 66 -1 O SER B 62 N ILE B 53 SHEET 12 AA312 ALA B 73 ASP B 78 -1 O ALA B 73 N VAL B 65 SHEET 1 AA4 8 THR A 147 THR A 148 0 SHEET 2 AA4 8 LEU A 154 GLU A 155 -1 O GLU A 155 N THR A 147 SHEET 3 AA4 8 THR A 105 SER A 117 -1 N ILE A 106 O LEU A 154 SHEET 4 AA4 8 THR A 123 PHE A 130 -1 O ASN A 124 N LEU A 115 SHEET 5 AA4 8 THR B 123 PHE B 130 -1 O HIS B 127 N HIS A 127 SHEET 6 AA4 8 THR B 105 SER B 117 -1 N LEU B 115 O ASN B 124 SHEET 7 AA4 8 LEU B 154 GLU B 155 -1 O LEU B 154 N ILE B 106 SHEET 8 AA4 8 THR B 147 THR B 148 -1 N THR B 147 O GLU B 155 SHEET 1 AA5 7 LYS B 36 LYS B 39 0 SHEET 2 AA5 7 HIS B 24 ILE B 29 -1 N ILE B 25 O ALA B 38 SHEET 3 AA5 7 ILE B 4 ASP B 10 -1 N ALA B 6 O ASP B 28 SHEET 4 AA5 7 GLY B 209 ASN B 216 -1 O ILE B 210 N LEU B 9 SHEET 5 AA5 7 TRP B 88 SER B 96 -1 N SER B 94 O ALA B 211 SHEET 6 AA5 7 VAL B 170 PHE B 175 -1 O ALA B 173 N LEU B 93 SHEET 7 AA5 7 LEU B 140 GLY B 144 -1 N ILE B 141 O LEU B 174 SHEET 1 AA6 6 LYS B 36 LYS B 39 0 SHEET 2 AA6 6 HIS B 24 ILE B 29 -1 N ILE B 25 O ALA B 38 SHEET 3 AA6 6 ILE B 4 ASP B 10 -1 N ALA B 6 O ASP B 28 SHEET 4 AA6 6 GLY B 209 ASN B 216 -1 O ILE B 210 N LEU B 9 SHEET 5 AA6 6 TRP B 88 SER B 96 -1 N SER B 94 O ALA B 211 SHEET 6 AA6 6 VAL B 179 HIS B 180 -1 O VAL B 179 N VAL B 89 LINK OE2 GLU A 8 MN MN A 302 1555 1555 2.32 LINK OD2 ASP A 10 MN MN A 302 1555 1555 2.10 LINK OD1 ASP A 10 CA CA A 303 1555 1555 2.44 LINK OD2 ASP A 10 CA CA A 303 1555 1555 2.51 LINK O TYR A 12 CA CA A 303 1555 1555 2.41 LINK OD1 ASN A 14 CA CA A 303 1555 1555 2.34 LINK OD1 ASP A 19 MN MN A 302 1555 1555 2.24 LINK OD2 ASP A 19 CA CA A 303 1555 1555 2.36 LINK NE2 HIS A 24 MN MN A 302 1555 1555 2.35 LINK MN MN A 302 O HOH A 413 1555 1555 2.16 LINK MN MN A 302 O HOH A 414 1555 1555 2.43 LINK CA CA A 303 O HOH A 417 1555 1555 2.37 LINK CA CA A 303 O HOH A 437 1555 1555 2.49 LINK OE2 GLU B 8 MN MN B 302 1555 1555 2.26 LINK OD2 ASP B 10 MN MN B 302 1555 1555 2.03 LINK OD1 ASP B 10 CA CA B 303 1555 1555 2.41 LINK OD2 ASP B 10 CA CA B 303 1555 1555 2.49 LINK O TYR B 12 CA CA B 303 1555 1555 2.37 LINK OD1 ASN B 14 CA CA B 303 1555 1555 2.43 LINK OD1 ASP B 19 MN MN B 302 1555 1555 2.40 LINK OD2 ASP B 19 CA CA B 303 1555 1555 2.44 LINK NE2 HIS B 24 MN MN B 302 1555 1555 2.32 LINK MN MN B 302 O HOH B 411 1555 1555 2.13 LINK MN MN B 302 O HOH B 418 1555 1555 2.01 LINK CA CA B 303 O HOH B 415 1555 1555 2.36 LINK CA CA B 303 O HOH B 421 1555 1555 2.26 CISPEP 1 ALA A 207 ASP A 208 0 2.96 CISPEP 2 ALA B 207 ASP B 208 0 -2.68 SITE 1 AC1 18 TYR A 12 ASN A 14 ASP A 16 ARG A 90 SITE 2 AC1 18 GLY A 98 LEU A 99 TYR A 100 ALA A 207 SITE 3 AC1 18 ASP A 208 ILE A 217 ASP A 218 GLY A 227 SITE 4 AC1 18 ARG A 228 HOH A 407 HOH A 425 HOH A 449 SITE 5 AC1 18 TYR B 176 2KO B 301 SITE 1 AC2 6 GLU A 8 ASP A 10 ASP A 19 HIS A 24 SITE 2 AC2 6 HOH A 413 HOH A 414 SITE 1 AC3 6 ASP A 10 TYR A 12 ASN A 14 ASP A 19 SITE 2 AC3 6 HOH A 417 HOH A 437 SITE 1 AC4 4 ARG A 90 LEU A 99 HOH A 457 TYR B 176 SITE 1 AC5 15 ARG A 90 TYR A 100 ILE A 141 TYR A 176 SITE 2 AC5 15 HIS A 205 2KO A 301 TYR B 12 ASN B 14 SITE 3 AC5 15 GLY B 98 LEU B 99 TYR B 100 TYR B 176 SITE 4 AC5 15 ALA B 207 ASP B 208 ARG B 228 SITE 1 AC6 6 GLU B 8 ASP B 10 ASP B 19 HIS B 24 SITE 2 AC6 6 HOH B 411 HOH B 418 SITE 1 AC7 6 ASP B 10 TYR B 12 ASN B 14 ASP B 19 SITE 2 AC7 6 HOH B 415 HOH B 421 CRYST1 61.600 116.110 58.690 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016234 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008613 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017039 0.00000