HEADER DNA BINDING PROTEIN 22-JAN-18 5Z69 TITLE STRUCTURE OF THE RECOMBINATION MEDIATOR PROTEIN RECF-ATPRS IN RECFOR TITLE 2 PATHWAY COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA REPLICATION AND REPAIR PROTEIN RECF; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CALDANAEROBACTER SUBTERRANEUS SUBSP. SOURCE 3 TENGCONGENSIS (STRAIN DSM 15242 / JCM 11007 / NBRC 100824 / MB4); SOURCE 4 ORGANISM_COMMON: THERMOANAEROBACTER TENGCONGENSIS; SOURCE 5 ORGANISM_TAXID: 273068; SOURCE 6 STRAIN: DSM 15242 / JCM 11007 / NBRC 100824 / MB4; SOURCE 7 GENE: RECF, TTE0004; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 866768 KEYWDS RECF, DNA REPAIR, RECOMBINATION MEDIATOR, RECFOR, RAD50, DNA BINDING KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Q.TANG,Y.-P.LIU,X.-X.YAN REVDAT 2 06-NOV-24 5Z69 1 REMARK REVDAT 1 17-OCT-18 5Z69 0 JRNL AUTH Q.TANG,Y.P.LIU,H.H.SHAN,L.F.TIAN,J.Z.ZHANG,X.X.YAN JRNL TITL ATP-DEPENDENT CONFORMATIONAL CHANGE IN ABC-ATPASE RECF JRNL TITL 2 SERVES AS A SWITCH IN DNA REPAIR. JRNL REF SCI REP V. 8 2127 2018 JRNL REFN ESSN 2045-2322 JRNL PMID 29391496 JRNL DOI 10.1038/S41598-018-20557-0 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.84 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 53379 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.780 REMARK 3 FREE R VALUE TEST SET COUNT : 2550 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.8361 - 5.4715 1.00 2960 154 0.1825 0.2023 REMARK 3 2 5.4715 - 4.3580 1.00 2870 141 0.1585 0.1748 REMARK 3 3 4.3580 - 3.8116 1.00 2871 153 0.1614 0.1930 REMARK 3 4 3.8116 - 3.4651 1.00 2830 157 0.1717 0.1870 REMARK 3 5 3.4651 - 3.2179 1.00 2856 126 0.1889 0.2360 REMARK 3 6 3.2179 - 3.0288 1.00 2877 121 0.2019 0.2515 REMARK 3 7 3.0288 - 2.8776 1.00 2800 161 0.2027 0.2381 REMARK 3 8 2.8776 - 2.7527 1.00 2837 135 0.2100 0.2748 REMARK 3 9 2.7527 - 2.6470 1.00 2807 140 0.2002 0.2599 REMARK 3 10 2.6470 - 2.5558 1.00 2812 139 0.1950 0.2397 REMARK 3 11 2.5558 - 2.4761 0.99 2796 143 0.1985 0.2361 REMARK 3 12 2.4761 - 2.4054 0.99 2766 155 0.2041 0.2264 REMARK 3 13 2.4054 - 2.3422 0.99 2810 136 0.2068 0.2243 REMARK 3 14 2.3422 - 2.2851 0.99 2777 140 0.2155 0.2691 REMARK 3 15 2.2851 - 2.2333 0.99 2851 134 0.2288 0.3031 REMARK 3 16 2.2333 - 2.1858 0.99 2757 132 0.2322 0.3283 REMARK 3 17 2.1858 - 2.1421 0.99 2838 147 0.2459 0.2890 REMARK 3 18 2.1421 - 2.1017 0.97 2714 136 0.2599 0.3071 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.240 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 6225 REMARK 3 ANGLE : 1.267 8363 REMARK 3 CHIRALITY : 0.051 925 REMARK 3 PLANARITY : 0.005 1067 REMARK 3 DIHEDRAL : 16.970 2423 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -6 THROUGH 114 ) REMARK 3 ORIGIN FOR THE GROUP (A): -37.782 -5.0393 9.2827 REMARK 3 T TENSOR REMARK 3 T11: 0.2248 T22: 0.1558 REMARK 3 T33: 0.2371 T12: 0.0185 REMARK 3 T13: 0.0008 T23: -0.0240 REMARK 3 L TENSOR REMARK 3 L11: 2.4440 L22: 3.6199 REMARK 3 L33: 2.4798 L12: 0.2108 REMARK 3 L13: 0.1535 L23: -0.3676 REMARK 3 S TENSOR REMARK 3 S11: 0.0211 S12: -0.1007 S13: -0.0581 REMARK 3 S21: 0.1896 S22: 0.0191 S23: -0.0383 REMARK 3 S31: 0.1579 S32: 0.0042 S33: -0.0248 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 115 THROUGH 257 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.4214 -2.1835 15.9304 REMARK 3 T TENSOR REMARK 3 T11: 0.2795 T22: 0.3529 REMARK 3 T33: 0.2994 T12: -0.0368 REMARK 3 T13: -0.0576 T23: 0.0166 REMARK 3 L TENSOR REMARK 3 L11: 5.6564 L22: 2.2973 REMARK 3 L33: 2.2801 L12: -1.7744 REMARK 3 L13: 1.0514 L23: -0.4207 REMARK 3 S TENSOR REMARK 3 S11: -0.0270 S12: 0.0057 S13: 0.2330 REMARK 3 S21: 0.1630 S22: 0.0257 S23: -0.2889 REMARK 3 S31: 0.0412 S32: 0.4561 S33: -0.0583 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 258 THROUGH 365 ) REMARK 3 ORIGIN FOR THE GROUP (A): -30.9876 4.3973 24.7004 REMARK 3 T TENSOR REMARK 3 T11: 0.4795 T22: 0.4366 REMARK 3 T33: 0.2974 T12: 0.0243 REMARK 3 T13: -0.0084 T23: -0.1034 REMARK 3 L TENSOR REMARK 3 L11: 2.7024 L22: 1.6484 REMARK 3 L33: 1.1967 L12: -0.4878 REMARK 3 L13: -0.5104 L23: 0.3586 REMARK 3 S TENSOR REMARK 3 S11: -0.1976 S12: -0.8383 S13: 0.5394 REMARK 3 S21: 0.5434 S22: 0.1268 S23: 0.0435 REMARK 3 S31: -0.1584 S32: 0.1082 S33: 0.1060 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID -5 THROUGH 114 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.2984 3.9775 53.1471 REMARK 3 T TENSOR REMARK 3 T11: 0.4480 T22: 0.3847 REMARK 3 T33: 0.4295 T12: 0.0128 REMARK 3 T13: -0.1815 T23: -0.0271 REMARK 3 L TENSOR REMARK 3 L11: 4.0218 L22: 3.2814 REMARK 3 L33: 4.1727 L12: 0.8452 REMARK 3 L13: 1.2518 L23: 0.6612 REMARK 3 S TENSOR REMARK 3 S11: -0.0464 S12: -0.1904 S13: 0.4574 REMARK 3 S21: 0.0715 S22: -0.0328 S23: 0.1540 REMARK 3 S31: -0.2238 S32: -0.2521 S33: 0.0714 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 115 THROUGH 263 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.7995 0.4455 24.4422 REMARK 3 T TENSOR REMARK 3 T11: 0.2789 T22: 0.3301 REMARK 3 T33: 0.3832 T12: 0.0593 REMARK 3 T13: -0.0919 T23: 0.0058 REMARK 3 L TENSOR REMARK 3 L11: 3.3562 L22: 3.3922 REMARK 3 L33: 4.6911 L12: 1.5167 REMARK 3 L13: -0.7530 L23: -2.1813 REMARK 3 S TENSOR REMARK 3 S11: -0.1234 S12: 0.3623 S13: 0.2390 REMARK 3 S21: -0.0907 S22: 0.2670 S23: -0.0813 REMARK 3 S31: -0.0340 S32: -0.0411 S33: -0.1239 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 264 THROUGH 365 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.6289 -7.8411 47.7638 REMARK 3 T TENSOR REMARK 3 T11: 0.5034 T22: 0.6121 REMARK 3 T33: 0.3857 T12: -0.0479 REMARK 3 T13: -0.0767 T23: 0.0465 REMARK 3 L TENSOR REMARK 3 L11: 2.2171 L22: 1.7158 REMARK 3 L33: 3.2934 L12: 0.4185 REMARK 3 L13: 1.7207 L23: 0.3727 REMARK 3 S TENSOR REMARK 3 S11: 0.3080 S12: -0.7900 S13: -0.1237 REMARK 3 S21: 0.4981 S22: -0.1175 S23: 0.0905 REMARK 3 S31: 0.4891 S32: -0.9728 S33: -0.1620 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5Z69 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 30-JAN-18. REMARK 100 THE DEPOSITION ID IS D_1300006552. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-FEB-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.005 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 913873 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 7.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 31.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.14 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.94 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.67 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 3350, 300 MM NACL, 100 MM TRIS REMARK 280 -HCL, PH 7.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 83.36350 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 24.05350 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 83.36350 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 24.05350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS B -6 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A -6 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 56 CE NZ REMARK 470 LYS A 127 CD CE NZ REMARK 470 LYS A 146 CD CE NZ REMARK 470 LYS A 157 CE NZ REMARK 470 LYS A 174 CG CD CE NZ REMARK 470 LEU A 178 CG CD1 CD2 REMARK 470 LYS A 219 CG CD CE NZ REMARK 470 GLU A 232 CG CD OE1 OE2 REMARK 470 LYS A 249 CE NZ REMARK 470 ARG A 266 NH1 REMARK 470 TYR A 276 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 331 CD CE NZ REMARK 470 GLU A 349 CG CD OE1 OE2 REMARK 470 LYS B 157 CE NZ REMARK 470 LYS B 205 CE NZ REMARK 470 LYS B 219 CG CD CE NZ REMARK 470 GLU B 232 CG CD OE1 OE2 REMARK 470 LYS B 249 CE NZ REMARK 470 ARG B 266 NH1 REMARK 470 LYS B 331 CD CE NZ REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 VAL A 116 CA CB CG1 CG2 REMARK 480 ARG B 75 CZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 677 O HOH A 716 2.00 REMARK 500 OE2 GLU B 221 O HOH B 401 2.09 REMARK 500 SG CYS A 22 CB CYS A 352 2.10 REMARK 500 N LYS A 331 O HOH A 501 2.13 REMARK 500 O ASP A 347 O HOH A 502 2.14 REMARK 500 O HOH A 671 O HOH A 717 2.14 REMARK 500 O HOH A 703 O HOH A 705 2.15 REMARK 500 O GLU A 128 NH2 ARG A 133 2.15 REMARK 500 O HOH A 710 O HOH A 720 2.16 REMARK 500 O HOH A 692 O HOH A 693 2.16 REMARK 500 O GLU B 128 NH2 ARG B 133 2.17 REMARK 500 O HOH A 727 O HOH A 729 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 71 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 LYS A 174 CB - CA - C ANGL. DEV. = -17.0 DEGREES REMARK 500 GLY A 175 N - CA - C ANGL. DEV. = 35.1 DEGREES REMARK 500 GLU A 176 CB - CA - C ANGL. DEV. = 28.5 DEGREES REMARK 500 GLU A 176 N - CA - CB ANGL. DEV. = -19.1 DEGREES REMARK 500 ASP A 177 N - CA - CB ANGL. DEV. = -28.7 DEGREES REMARK 500 ASP A 323 CB - CG - OD1 ANGL. DEV. = -5.5 DEGREES REMARK 500 ASP A 323 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 LYS B 363 CB - CA - C ANGL. DEV. = 15.5 DEGREES REMARK 500 LYS B 363 N - CA - C ANGL. DEV. = -17.3 DEGREES REMARK 500 LEU B 364 CB - CA - C ANGL. DEV. = -19.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 12 -130.84 48.48 REMARK 500 GLU A 172 -163.19 -129.76 REMARK 500 HIS A 234 -53.33 -149.58 REMARK 500 ASN A 274 -30.27 63.74 REMARK 500 GLU A 320 -119.66 56.76 REMARK 500 LEU A 321 76.33 56.57 REMARK 500 ASP A 322 153.63 -45.55 REMARK 500 LEU A 364 69.87 73.40 REMARK 500 ARG B 12 -128.02 54.33 REMARK 500 VAL B 230 -53.45 -121.59 REMARK 500 GLU B 232 74.81 -170.84 REMARK 500 HIS B 234 -13.00 -151.12 REMARK 500 GLU B 334 -133.56 40.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LEU A 110 GLY A 111 -40.78 REMARK 500 ASP A 322 ASP A 323 -146.40 REMARK 500 LEU B 110 GLY B 111 -32.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 730 DISTANCE = 6.18 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AGS A 401 DBREF 5Z69 A 1 361 UNP Q8RDL3 RECF_CALS4 1 361 DBREF 5Z69 B 1 361 UNP Q8RDL3 RECF_CALS4 1 361 SEQADV 5Z69 HIS A -6 UNP Q8RDL3 EXPRESSION TAG SEQADV 5Z69 HIS A -5 UNP Q8RDL3 EXPRESSION TAG SEQADV 5Z69 HIS A -4 UNP Q8RDL3 EXPRESSION TAG SEQADV 5Z69 SER A -3 UNP Q8RDL3 EXPRESSION TAG SEQADV 5Z69 GLN A -2 UNP Q8RDL3 EXPRESSION TAG SEQADV 5Z69 ASP A -1 UNP Q8RDL3 EXPRESSION TAG SEQADV 5Z69 PRO A 0 UNP Q8RDL3 EXPRESSION TAG SEQADV 5Z69 ASP A 362 UNP Q8RDL3 EXPRESSION TAG SEQADV 5Z69 LYS A 363 UNP Q8RDL3 EXPRESSION TAG SEQADV 5Z69 LEU A 364 UNP Q8RDL3 EXPRESSION TAG SEQADV 5Z69 ALA A 365 UNP Q8RDL3 EXPRESSION TAG SEQADV 5Z69 HIS B -6 UNP Q8RDL3 EXPRESSION TAG SEQADV 5Z69 HIS B -5 UNP Q8RDL3 EXPRESSION TAG SEQADV 5Z69 HIS B -4 UNP Q8RDL3 EXPRESSION TAG SEQADV 5Z69 SER B -3 UNP Q8RDL3 EXPRESSION TAG SEQADV 5Z69 GLN B -2 UNP Q8RDL3 EXPRESSION TAG SEQADV 5Z69 ASP B -1 UNP Q8RDL3 EXPRESSION TAG SEQADV 5Z69 PRO B 0 UNP Q8RDL3 EXPRESSION TAG SEQADV 5Z69 ASP B 362 UNP Q8RDL3 EXPRESSION TAG SEQADV 5Z69 LYS B 363 UNP Q8RDL3 EXPRESSION TAG SEQADV 5Z69 LEU B 364 UNP Q8RDL3 EXPRESSION TAG SEQADV 5Z69 ALA B 365 UNP Q8RDL3 EXPRESSION TAG SEQRES 1 A 372 HIS HIS HIS SER GLN ASP PRO MET TYR LEU LYS GLU ILE SEQRES 2 A 372 PHE VAL ASP ASN PHE ARG ASN LEU LYS LYS GLN LYS LEU SEQRES 3 A 372 GLU PHE CYS GLU GLY VAL ASN LEU ILE TYR GLY LEU ASN SEQRES 4 A 372 ALA GLN GLY LYS SER ASN LEU LEU GLU ALA ILE ARG LEU SEQRES 5 A 372 LEU SER MET GLY ARG SER PHE ARG GLY SER LYS MET SER SEQRES 6 A 372 GLU LEU VAL LYS PHE ASP GLU GLU TYR PHE TYR VAL ARG SEQRES 7 A 372 GLY LEU VAL ARG SER ALA ASP PHE TYR GLU LYS LYS ILE SEQRES 8 A 372 GLU PHE GLY TYR LYS VAL ASN GLY ASN LYS VAL ILE LYS SEQRES 9 A 372 VAL ASN GLY ASN LYS LEU LYS SER THR GLY GLU ILE LEU SEQRES 10 A 372 GLY HIS PHE LEU THR VAL ILE PHE SER PRO GLU ASP ILE SEQRES 11 A 372 GLU ILE ILE LYS GLU GLY PRO SER ARG ARG ARG LYS TYR SEQRES 12 A 372 LEU ASP ALA CYS ILE SER VAL ILE ASP LYS ASN TYR PHE SEQRES 13 A 372 PHE ASP LEU LEU GLN TYR ASN LYS THR LEU SER ASN ARG SEQRES 14 A 372 ASN SER LEU LEU LYS LYS ILE LYS GLU GLU GLY LYS GLY SEQRES 15 A 372 GLU ASP LEU LEU GLU ILE PHE ASP GLU LYS LEU ALA GLU SEQRES 16 A 372 TYR GLY ALA ARG ILE ILE LYS VAL ARG ASN ASN TYR LEU SEQRES 17 A 372 GLU LYS LEU LYS ASN SER MET SER LYS PHE LEU MET GLU SEQRES 18 A 372 ILE SER ASN GLU LYS LEU GLU ILE ILE TYR LEU ASN SER SEQRES 19 A 372 ALA GLY VAL LYS GLU VAL HIS GLU GLU ASN LEU ILE ARG SEQRES 20 A 372 GLU LYS LEU LYS ASN ARG LEU THR LYS SER LEU THR LEU SEQRES 21 A 372 ASP LEU LYS TYR LEU SER THR GLN VAL GLY PRO HIS ARG SEQRES 22 A 372 GLU ASP PHE LYS ILE LEU ILE ASN GLY TYR ASP SER ARG SEQRES 23 A 372 VAL TYR SER SER GLN GLY GLN LYS ARG THR ALA ALA LEU SEQRES 24 A 372 CYS LEU LYS LEU SER GLU LEU GLU ILE LEU GLU GLU GLU SEQRES 25 A 372 THR GLY GLU LYS PRO VAL LEU LEU LEU ASP ASP VAL MET SEQRES 26 A 372 SER GLU LEU ASP ASP ASN ARG LYS LYS TYR ILE LEU LYS SEQRES 27 A 372 LYS LEU GLU GLY PHE GLN SER PHE ILE THR HIS THR SER SEQRES 28 A 372 LYS SER ASP VAL GLU GLY ASP CYS CYS PHE LYS ILE TYR SEQRES 29 A 372 ASP GLY ILE VAL ASP LYS LEU ALA SEQRES 1 B 372 HIS HIS HIS SER GLN ASP PRO MET TYR LEU LYS GLU ILE SEQRES 2 B 372 PHE VAL ASP ASN PHE ARG ASN LEU LYS LYS GLN LYS LEU SEQRES 3 B 372 GLU PHE CYS GLU GLY VAL ASN LEU ILE TYR GLY LEU ASN SEQRES 4 B 372 ALA GLN GLY LYS SER ASN LEU LEU GLU ALA ILE ARG LEU SEQRES 5 B 372 LEU SER MET GLY ARG SER PHE ARG GLY SER LYS MET SER SEQRES 6 B 372 GLU LEU VAL LYS PHE ASP GLU GLU TYR PHE TYR VAL ARG SEQRES 7 B 372 GLY LEU VAL ARG SER ALA ASP PHE TYR GLU LYS LYS ILE SEQRES 8 B 372 GLU PHE GLY TYR LYS VAL ASN GLY ASN LYS VAL ILE LYS SEQRES 9 B 372 VAL ASN GLY ASN LYS LEU LYS SER THR GLY GLU ILE LEU SEQRES 10 B 372 GLY HIS PHE LEU THR VAL ILE PHE SER PRO GLU ASP ILE SEQRES 11 B 372 GLU ILE ILE LYS GLU GLY PRO SER ARG ARG ARG LYS TYR SEQRES 12 B 372 LEU ASP ALA CYS ILE SER VAL ILE ASP LYS ASN TYR PHE SEQRES 13 B 372 PHE ASP LEU LEU GLN TYR ASN LYS THR LEU SER ASN ARG SEQRES 14 B 372 ASN SER LEU LEU LYS LYS ILE LYS GLU GLU GLY LYS GLY SEQRES 15 B 372 GLU ASP LEU LEU GLU ILE PHE ASP GLU LYS LEU ALA GLU SEQRES 16 B 372 TYR GLY ALA ARG ILE ILE LYS VAL ARG ASN ASN TYR LEU SEQRES 17 B 372 GLU LYS LEU LYS ASN SER MET SER LYS PHE LEU MET GLU SEQRES 18 B 372 ILE SER ASN GLU LYS LEU GLU ILE ILE TYR LEU ASN SER SEQRES 19 B 372 ALA GLY VAL LYS GLU VAL HIS GLU GLU ASN LEU ILE ARG SEQRES 20 B 372 GLU LYS LEU LYS ASN ARG LEU THR LYS SER LEU THR LEU SEQRES 21 B 372 ASP LEU LYS TYR LEU SER THR GLN VAL GLY PRO HIS ARG SEQRES 22 B 372 GLU ASP PHE LYS ILE LEU ILE ASN GLY TYR ASP SER ARG SEQRES 23 B 372 VAL TYR SER SER GLN GLY GLN LYS ARG THR ALA ALA LEU SEQRES 24 B 372 CYS LEU LYS LEU SER GLU LEU GLU ILE LEU GLU GLU GLU SEQRES 25 B 372 THR GLY GLU LYS PRO VAL LEU LEU LEU ASP ASP VAL MET SEQRES 26 B 372 SER GLU LEU ASP ASP ASN ARG LYS LYS TYR ILE LEU LYS SEQRES 27 B 372 LYS LEU GLU GLY PHE GLN SER PHE ILE THR HIS THR SER SEQRES 28 B 372 LYS SER ASP VAL GLU GLY ASP CYS CYS PHE LYS ILE TYR SEQRES 29 B 372 ASP GLY ILE VAL ASP LYS LEU ALA HET AGS A 401 31 HETNAM AGS PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER HETSYN AGS ATP-GAMMA-S; ADENOSINE 5'-(3-THIOTRIPHOSPHATE); HETSYN 2 AGS ADENOSINE 5'-(GAMMA-THIOTRIPHOSPHATE); ADENOSINE-5'- HETSYN 3 AGS DIPHOSPHATE MONOTHIOPHOSPHATE FORMUL 3 AGS C10 H16 N5 O12 P3 S FORMUL 4 HOH *381(H2 O) HELIX 1 AA1 GLY A 35 GLY A 49 1 15 HELIX 2 AA2 LYS A 56 VAL A 61 5 6 HELIX 3 AA3 SER A 105 LEU A 110 5 6 HELIX 4 AA4 SER A 119 ASP A 122 5 4 HELIX 5 AA5 ILE A 123 GLU A 128 1 6 HELIX 6 AA6 GLY A 129 ASP A 145 1 17 HELIX 7 AA7 ASP A 145 GLU A 171 1 27 HELIX 8 AA8 GLY A 175 ASP A 177 5 3 HELIX 9 AA9 LEU A 178 SER A 216 1 39 HELIX 10 AB1 GLU A 235 SER A 250 1 16 HELIX 11 AB2 SER A 250 LEU A 258 1 9 HELIX 12 AB3 GLY A 263 GLU A 267 5 5 HELIX 13 AB4 SER A 283 GLY A 307 1 25 HELIX 14 AB5 ASP A 323 TYR A 328 1 6 HELIX 15 AB6 TYR A 328 LEU A 333 1 6 HELIX 16 AB7 ALA B 33 GLY B 49 1 17 HELIX 17 AB8 LYS B 56 VAL B 61 1 6 HELIX 18 AB9 SER B 105 LEU B 110 5 6 HELIX 19 AC1 SER B 119 GLU B 121 5 3 HELIX 20 AC2 ASP B 122 GLU B 128 1 7 HELIX 21 AC3 GLY B 129 ASP B 145 1 17 HELIX 22 AC4 ASP B 145 GLU B 172 1 28 HELIX 23 AC5 GLY B 175 SER B 216 1 42 HELIX 24 AC6 GLU B 235 SER B 250 1 16 HELIX 25 AC7 SER B 250 LEU B 258 1 9 HELIX 26 AC8 GLY B 263 GLU B 267 5 5 HELIX 27 AC9 SER B 278 SER B 282 1 5 HELIX 28 AD1 SER B 283 GLY B 307 1 25 HELIX 29 AD2 ASP B 322 GLU B 334 1 13 SHEET 1 AA1 6 GLN A 17 GLU A 20 0 SHEET 2 AA1 6 TYR A 2 ASP A 9 -1 N ILE A 6 O LEU A 19 SHEET 3 AA1 6 TYR A 67 SER A 76 -1 O ARG A 75 N TYR A 2 SHEET 4 AA1 6 PHE A 79 LYS A 89 -1 O PHE A 86 N VAL A 70 SHEET 5 AA1 6 LYS A 94 VAL A 98 -1 O LYS A 97 N GLU A 85 SHEET 6 AA1 6 ASN A 101 LYS A 102 -1 O ASN A 101 N VAL A 98 SHEET 1 AA2 6 THR A 115 PHE A 118 0 SHEET 2 AA2 6 VAL A 311 LEU A 314 1 O LEU A 313 N PHE A 118 SHEET 3 AA2 6 SER A 338 HIS A 342 1 O PHE A 339 N LEU A 314 SHEET 4 AA2 6 VAL A 25 TYR A 29 1 N ILE A 28 O ILE A 340 SHEET 5 AA2 6 CYS A 352 TYR A 357 1 O PHE A 354 N LEU A 27 SHEET 6 AA2 6 ILE A 360 LYS A 363 -1 O ASP A 362 N LYS A 355 SHEET 1 AA3 3 LEU A 220 LEU A 225 0 SHEET 2 AA3 3 ASP A 268 ILE A 273 -1 O LEU A 272 N GLU A 221 SHEET 3 AA3 3 TYR A 276 ASP A 277 -1 O TYR A 276 N ILE A 273 SHEET 1 AA4 6 GLN B 17 GLU B 20 0 SHEET 2 AA4 6 TYR B 2 ASP B 9 -1 N ILE B 6 O LEU B 19 SHEET 3 AA4 6 TYR B 67 SER B 76 -1 O TYR B 69 N ASP B 9 SHEET 4 AA4 6 PHE B 79 LYS B 89 -1 O ILE B 84 N GLY B 72 SHEET 5 AA4 6 LYS B 94 VAL B 98 -1 O VAL B 95 N GLY B 87 SHEET 6 AA4 6 ASN B 101 LYS B 102 -1 O ASN B 101 N VAL B 98 SHEET 1 AA5 6 THR B 115 PHE B 118 0 SHEET 2 AA5 6 VAL B 311 LEU B 314 1 O LEU B 313 N PHE B 118 SHEET 3 AA5 6 SER B 338 HIS B 342 1 O PHE B 339 N LEU B 314 SHEET 4 AA5 6 VAL B 25 TYR B 29 1 N ILE B 28 O ILE B 340 SHEET 5 AA5 6 CYS B 352 TYR B 357 1 O PHE B 354 N LEU B 27 SHEET 6 AA5 6 ILE B 360 LYS B 363 -1 O ASP B 362 N LYS B 355 SHEET 1 AA6 3 LEU B 220 LEU B 225 0 SHEET 2 AA6 3 ASP B 268 ILE B 273 -1 O LEU B 272 N GLU B 221 SHEET 3 AA6 3 TYR B 276 ASP B 277 -1 O TYR B 276 N ILE B 273 SSBOND 1 CYS A 22 CYS A 352 1555 1555 2.03 SSBOND 2 CYS B 22 CYS B 352 1555 1555 2.03 SITE 1 AC1 16 ARG A 12 ASN A 13 ASN A 32 ALA A 33 SITE 2 AC1 16 GLN A 34 GLY A 35 LYS A 36 SER A 37 SITE 3 AC1 16 ASN A 38 ARG A 53 GLU A 59 VAL A 61 SITE 4 AC1 16 LYS A 62 PHE A 63 ASP A 315 HOH A 516 CRYST1 166.727 48.107 116.855 90.00 100.06 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005998 0.000000 0.001064 0.00000 SCALE2 0.000000 0.020787 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008691 0.00000