HEADER HYDROLASE/DNA 25-JAN-18 5Z6W TITLE CRYSTAL STRUCTURE OF PAFAN1 BOUND TO 2NT 5'FLAP DNA WITH GAP WITH TITLE 2 MANGANESE COMPND MOL_ID: 1; COMPND 2 MOLECULE: FANCONI-ASSOCIATED NUCLEASE 1 HOMOLOG; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PFAN1; COMPND 5 EC: 3.1.4.1; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA (5'-D(P*GP*TP*TP*GP*GP*GP*AP*TP*TP*G)-3'); COMPND 9 CHAIN: H; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: DNA (5'-D(P*AP*TP*TP*CP*AP*A)-3'); COMPND 13 CHAIN: B; COMPND 14 ENGINEERED: YES; COMPND 15 MOL_ID: 4; COMPND 16 MOLECULE: DNA (5'- COMPND 17 D(P*GP*AP*AP*TP*GP*TP*GP*TP*CP*TP*CP*AP*AP*TP*CP*CP*CP*AP*AP*CP*TP*T) COMPND 18 -3'); COMPND 19 CHAIN: C; COMPND 20 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA (STRAIN ATCC 15692 / DSM SOURCE 3 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1); SOURCE 4 ORGANISM_TAXID: 208964; SOURCE 5 STRAIN: ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 SOURCE 6 / 1C / PRS 101 / PAO1; SOURCE 7 GENE: FAN1, PA1865; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 13 ORGANISM_TAXID: 32630; SOURCE 14 MOL_ID: 3; SOURCE 15 SYNTHETIC: YES; SOURCE 16 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 17 ORGANISM_TAXID: 32630; SOURCE 18 MOL_ID: 4; SOURCE 19 SYNTHETIC: YES; SOURCE 20 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 21 ORGANISM_TAXID: 32630 KEYWDS NUCLEASE, HYDROLASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR H.JIN,Y.CHO REVDAT 3 22-NOV-23 5Z6W 1 REMARK REVDAT 2 09-MAY-18 5Z6W 1 TITLE JRNL REVDAT 1 14-MAR-18 5Z6W 0 JRNL AUTH H.JIN,U.ROY,G.LEE,O.D.SCHARER,Y.CHO JRNL TITL STRUCTURAL MECHANISM OF DNA INTERSTRAND CROSS-LINK UNHOOKING JRNL TITL 2 BY THE BACTERIAL FAN1 NUCLEASE. JRNL REF J. BIOL. CHEM. V. 293 6482 2018 JRNL REFN ESSN 1083-351X JRNL PMID 29514982 JRNL DOI 10.1074/JBC.RA118.002171 REMARK 2 REMARK 2 RESOLUTION. 3.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1-2155_1069: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.99 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 15341 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.880 REMARK 3 FREE R VALUE TEST SET COUNT : 749 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.9949 - 5.4697 1.00 3037 167 0.1537 0.1989 REMARK 3 2 5.4697 - 4.3424 1.00 2919 147 0.1709 0.2191 REMARK 3 3 4.3424 - 3.7938 1.00 2881 153 0.1894 0.2643 REMARK 3 4 3.7938 - 3.4470 1.00 2887 142 0.2269 0.3029 REMARK 3 5 3.4470 - 3.2000 1.00 2868 140 0.2671 0.3147 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.330 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.590 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 5437 REMARK 3 ANGLE : 1.155 7512 REMARK 3 CHIRALITY : 0.053 786 REMARK 3 PLANARITY : 0.007 861 REMARK 3 DIHEDRAL : 22.077 3101 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 14 THROUGH 168 ) REMARK 3 ORIGIN FOR THE GROUP (A): 37.3083 -24.1351 -28.8644 REMARK 3 T TENSOR REMARK 3 T11: 0.5040 T22: 0.5821 REMARK 3 T33: 0.5924 T12: 0.0068 REMARK 3 T13: 0.0914 T23: -0.0297 REMARK 3 L TENSOR REMARK 3 L11: 1.9500 L22: 2.4572 REMARK 3 L33: 2.0941 L12: 1.0391 REMARK 3 L13: -0.1524 L23: 0.0368 REMARK 3 S TENSOR REMARK 3 S11: 0.2106 S12: 0.2803 S13: 0.0413 REMARK 3 S21: -0.0112 S22: 0.0614 S23: -0.6336 REMARK 3 S31: -0.0292 S32: 0.3629 S33: 1.2276 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 169 THROUGH 320 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.1034 -5.0725 -27.6686 REMARK 3 T TENSOR REMARK 3 T11: 0.5525 T22: 0.5249 REMARK 3 T33: 0.4174 T12: 0.0542 REMARK 3 T13: 0.1173 T23: 0.0996 REMARK 3 L TENSOR REMARK 3 L11: 0.3835 L22: 1.3028 REMARK 3 L33: 0.1394 L12: -0.7113 REMARK 3 L13: 0.3717 L23: 0.5332 REMARK 3 S TENSOR REMARK 3 S11: -0.1594 S12: -0.1155 S13: 0.0252 REMARK 3 S21: 0.0895 S22: 0.2080 S23: -0.1269 REMARK 3 S31: -0.0503 S32: 0.1194 S33: 0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 321 THROUGH 366 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.4667 -7.3017 -10.6337 REMARK 3 T TENSOR REMARK 3 T11: 0.8921 T22: 0.6805 REMARK 3 T33: 0.7212 T12: -0.0560 REMARK 3 T13: 0.2101 T23: 0.0239 REMARK 3 L TENSOR REMARK 3 L11: 0.2616 L22: 0.3109 REMARK 3 L33: -0.0349 L12: 0.6548 REMARK 3 L13: 0.1848 L23: 0.6028 REMARK 3 S TENSOR REMARK 3 S11: -0.0401 S12: -0.2179 S13: -0.2955 REMARK 3 S21: 0.4284 S22: -0.1916 S23: 0.3587 REMARK 3 S31: -0.0627 S32: -0.1822 S33: -0.0005 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 367 THROUGH 559 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.2190 -21.7485 -29.8879 REMARK 3 T TENSOR REMARK 3 T11: 0.4291 T22: 0.4215 REMARK 3 T33: 0.4828 T12: -0.0218 REMARK 3 T13: 0.0126 T23: -0.0359 REMARK 3 L TENSOR REMARK 3 L11: 3.6526 L22: 1.6615 REMARK 3 L33: 1.8024 L12: 0.8517 REMARK 3 L13: -1.5320 L23: -0.8081 REMARK 3 S TENSOR REMARK 3 S11: 0.3654 S12: 0.6826 S13: 0.5367 REMARK 3 S21: 0.1433 S22: -0.0280 S23: 0.3150 REMARK 3 S31: -0.1260 S32: -0.4106 S33: 0.0010 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 1 THROUGH 10 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.1667 -36.7592 -18.2070 REMARK 3 T TENSOR REMARK 3 T11: 0.7954 T22: 0.9960 REMARK 3 T33: 0.7028 T12: -0.4132 REMARK 3 T13: -0.4226 T23: 0.1683 REMARK 3 L TENSOR REMARK 3 L11: 1.6307 L22: 0.4409 REMARK 3 L33: 3.0620 L12: -1.0338 REMARK 3 L13: -2.3949 L23: 1.4588 REMARK 3 S TENSOR REMARK 3 S11: 1.7984 S12: 0.0417 S13: -0.1855 REMARK 3 S21: -0.0750 S22: 0.7962 S23: -0.5217 REMARK 3 S31: 0.1050 S32: -1.5364 S33: 1.0327 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 9 THROUGH 14 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.1179 -11.7485 -2.7118 REMARK 3 T TENSOR REMARK 3 T11: 1.9940 T22: 2.1995 REMARK 3 T33: 2.0513 T12: -0.0242 REMARK 3 T13: 0.0001 T23: -0.1216 REMARK 3 L TENSOR REMARK 3 L11: 0.0736 L22: 0.0384 REMARK 3 L33: 0.0393 L12: -0.0807 REMARK 3 L13: 0.0243 L23: -0.0598 REMARK 3 S TENSOR REMARK 3 S11: -0.1654 S12: -0.4224 S13: -1.0627 REMARK 3 S21: -0.0822 S22: -1.1454 S23: -0.2522 REMARK 3 S31: 0.1621 S32: 0.9723 S33: -0.0010 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 1 THROUGH 5 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.2709 -7.7835 -7.6851 REMARK 3 T TENSOR REMARK 3 T11: 1.2750 T22: 1.8155 REMARK 3 T33: 2.3757 T12: -0.1111 REMARK 3 T13: -0.1416 T23: 0.2487 REMARK 3 L TENSOR REMARK 3 L11: 0.4599 L22: 0.0538 REMARK 3 L33: 0.4191 L12: 0.0573 REMARK 3 L13: 0.2422 L23: 0.0356 REMARK 3 S TENSOR REMARK 3 S11: 0.1555 S12: -0.1401 S13: 0.2394 REMARK 3 S21: -0.5027 S22: 0.1170 S23: 0.4389 REMARK 3 S31: -0.5489 S32: 0.0217 S33: -0.1658 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 8 THROUGH 12 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.6322 -19.0830 -23.1106 REMARK 3 T TENSOR REMARK 3 T11: 2.6909 T22: 2.5655 REMARK 3 T33: 2.2228 T12: 0.3837 REMARK 3 T13: 0.2016 T23: 0.2770 REMARK 3 L TENSOR REMARK 3 L11: 0.0083 L22: -0.0176 REMARK 3 L33: 0.0160 L12: 0.0134 REMARK 3 L13: -0.0162 L23: -0.0141 REMARK 3 S TENSOR REMARK 3 S11: -0.5910 S12: -0.5898 S13: -0.0579 REMARK 3 S21: 0.0355 S22: 0.1008 S23: -0.6115 REMARK 3 S31: -0.3568 S32: 0.4080 S33: -0.0013 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 13 THROUGH 24 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.9105 -38.0649 -15.1939 REMARK 3 T TENSOR REMARK 3 T11: 1.2577 T22: 0.9300 REMARK 3 T33: 0.6949 T12: -0.0618 REMARK 3 T13: -0.0664 T23: 0.0181 REMARK 3 L TENSOR REMARK 3 L11: 1.2868 L22: 0.0846 REMARK 3 L33: 0.1157 L12: 0.1207 REMARK 3 L13: -0.1890 L23: -0.0679 REMARK 3 S TENSOR REMARK 3 S11: 0.2886 S12: 0.5201 S13: -1.2952 REMARK 3 S21: 1.6657 S22: 0.8747 S23: 0.8436 REMARK 3 S31: 1.0532 S32: -0.9481 S33: 0.1844 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5Z6W COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 01-FEB-18. REMARK 100 THE DEPOSITION ID IS D_1300006523. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-JUN-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 11C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9796 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15512 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : 0.98100 REMARK 200 R SYM (I) : 0.09800 REMARK 200 FOR THE DATA SET : 16.1900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.26 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.98100 REMARK 200 R SYM FOR SHELL (I) : 0.98100 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 4R8A REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.76 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES(PH7.2), 25%(W/V) PEG 8000, REMARK 280 30MM GLY-GLY-GLY, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 40.43700 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.74500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 52.48450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 52.74500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 40.43700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 52.48450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, H, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -20 REMARK 465 GLY A -19 REMARK 465 SER A -18 REMARK 465 SER A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 SER A -10 REMARK 465 SER A -9 REMARK 465 GLY A -8 REMARK 465 LEU A -7 REMARK 465 VAL A -6 REMARK 465 PRO A -5 REMARK 465 ARG A -4 REMARK 465 GLY A -3 REMARK 465 SER A -2 REMARK 465 HIS A -1 REMARK 465 MET A 0 REMARK 465 MET A 1 REMARK 465 HIS A 2 REMARK 465 GLU A 3 REMARK 465 GLN A 4 REMARK 465 TYR A 5 REMARK 465 GLN A 6 REMARK 465 ALA A 7 REMARK 465 PRO A 8 REMARK 465 LEU A 9 REMARK 465 PRO A 10 REMARK 465 VAL A 11 REMARK 465 ASN A 12 REMARK 465 SER A 13 REMARK 465 DT B 2 REMARK 465 DT B 3 REMARK 465 DC B 4 REMARK 465 DA B 5 REMARK 465 DC B 6 REMARK 465 DA B 7 REMARK 465 DC B 8 REMARK 465 DT C 6 REMARK 465 DG C 7 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 130 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 559 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DA H 7 O3' DA H 7 C3' -0.038 REMARK 500 DT C 8 C1' DT C 8 N1 0.103 REMARK 500 DA C 15 O3' DA C 15 C3' -0.036 REMARK 500 DT C 16 O3' DT C 16 C3' -0.039 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG H 10 O4' - C1' - N9 ANGL. DEV. = 2.1 DEGREES REMARK 500 DT C 8 O4' - C1' - N1 ANGL. DEV. = 4.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 15 107.00 76.77 REMARK 500 ASP A 39 6.89 -66.12 REMARK 500 LEU A 55 144.68 -39.76 REMARK 500 GLN A 103 61.91 39.00 REMARK 500 ARG A 130 -78.03 -49.99 REMARK 500 ARG A 134 156.35 -45.89 REMARK 500 GLU A 161 116.34 175.85 REMARK 500 PRO A 361 -72.75 -30.85 REMARK 500 CYS A 365 83.38 65.46 REMARK 500 VAL A 385 -35.59 -137.49 REMARK 500 ASN A 387 10.75 59.58 REMARK 500 PHE A 411 27.00 -160.31 REMARK 500 TYR A 466 79.34 -115.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 601 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 386 OE1 REMARK 620 2 GLU A 386 OE2 57.4 REMARK 620 3 ASP A 507 OD1 73.8 84.7 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 602 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 507 OD2 REMARK 620 2 GLU A 522 OE2 77.5 REMARK 620 3 VAL A 523 O 69.3 89.6 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 602 DBREF 5Z6W A 1 559 UNP Q9I2N0 FAN1_PSEAE 1 559 DBREF 5Z6W H 1 10 PDB 5Z6W 5Z6W 1 10 DBREF 5Z6W B 2 14 PDB 5Z6W 5Z6W 2 14 DBREF 5Z6W C 1 24 PDB 5Z6W 5Z6W 1 24 SEQADV 5Z6W MET A -20 UNP Q9I2N0 EXPRESSION TAG SEQADV 5Z6W GLY A -19 UNP Q9I2N0 EXPRESSION TAG SEQADV 5Z6W SER A -18 UNP Q9I2N0 EXPRESSION TAG SEQADV 5Z6W SER A -17 UNP Q9I2N0 EXPRESSION TAG SEQADV 5Z6W HIS A -16 UNP Q9I2N0 EXPRESSION TAG SEQADV 5Z6W HIS A -15 UNP Q9I2N0 EXPRESSION TAG SEQADV 5Z6W HIS A -14 UNP Q9I2N0 EXPRESSION TAG SEQADV 5Z6W HIS A -13 UNP Q9I2N0 EXPRESSION TAG SEQADV 5Z6W HIS A -12 UNP Q9I2N0 EXPRESSION TAG SEQADV 5Z6W HIS A -11 UNP Q9I2N0 EXPRESSION TAG SEQADV 5Z6W SER A -10 UNP Q9I2N0 EXPRESSION TAG SEQADV 5Z6W SER A -9 UNP Q9I2N0 EXPRESSION TAG SEQADV 5Z6W GLY A -8 UNP Q9I2N0 EXPRESSION TAG SEQADV 5Z6W LEU A -7 UNP Q9I2N0 EXPRESSION TAG SEQADV 5Z6W VAL A -6 UNP Q9I2N0 EXPRESSION TAG SEQADV 5Z6W PRO A -5 UNP Q9I2N0 EXPRESSION TAG SEQADV 5Z6W ARG A -4 UNP Q9I2N0 EXPRESSION TAG SEQADV 5Z6W GLY A -3 UNP Q9I2N0 EXPRESSION TAG SEQADV 5Z6W SER A -2 UNP Q9I2N0 EXPRESSION TAG SEQADV 5Z6W HIS A -1 UNP Q9I2N0 EXPRESSION TAG SEQADV 5Z6W MET A 0 UNP Q9I2N0 EXPRESSION TAG SEQRES 1 A 580 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 580 LEU VAL PRO ARG GLY SER HIS MET MET HIS GLU GLN TYR SEQRES 3 A 580 GLN ALA PRO LEU PRO VAL ASN SER PRO ALA LEU PRO GLU SEQRES 4 A 580 PRO PHE TYR TYR LEU HIS ASN PHE ARG ALA VAL LEU ALA SEQRES 5 A 580 TRP ILE GLY GLU ARG TYR ALA ASP LEU LEU ASP ASP GLN SEQRES 6 A 580 GLU ARG ALA PHE ILE ALA ALA PHE ALA GLU LEU PRO GLU SEQRES 7 A 580 ALA SER GLN ALA LEU LEU VAL ARG MET VAL MET ARG LYS SEQRES 8 A 580 GLY THR LEU PHE ARG GLU GLY LYS LEU ALA TYR ALA GLU SEQRES 9 A 580 ILE GLY ASP THR ARG ALA ALA VAL GLN PRO LEU LEU ALA SEQRES 10 A 580 LEU GLY TRP VAL ASP ALA GLN PRO THR LEU GLU LEU ALA SEQRES 11 A 580 GLN LEU PHE GLY LEU LEU LYS LYS ASP GLU LEU SER GLN SEQRES 12 A 580 LEU PHE ARG ASP HIS LEU GLY ARG ALA ASN LEU ARG LYS SEQRES 13 A 580 ASP ALA LEU LEU GLU ARG LEU GLN PRO LEU PHE PRO GLU SEQRES 14 A 580 ALA ARG ARG LEU ALA GLU TRP GLN ALA ASP PHE ALA GLU SEQRES 15 A 580 PRO VAL TYR GLU LEU ARG CYS MET ALA LEU CYS ASP ARG SEQRES 16 A 580 LEU ARG LEU MET TYR PHE GLY ASN LEU TRP GLN ASP TRP SEQRES 17 A 580 SER GLU PHE VAL LEU ALA ASP LEU GLY ILE TYR ARG TYR SEQRES 18 A 580 GLU SER VAL GLU PHE SER ALA ASP SER ARG GLY PHE ARG SEQRES 19 A 580 LEU ARG ALA ASP VAL ASP ALA TYR LEU HIS LEU PHE ASP SEQRES 20 A 580 CYS ARG GLN ARG PHE ASP LEU GLY GLU PRO LEU GLU GLU SEQRES 21 A 580 LEU LEU ALA GLY LEU PRO GLY GLU PRO TYR ALA ASN PRO SEQRES 22 A 580 TRP LEU GLU GLY ARG ARG VAL LYS LEU LEU PHE GLN PHE SEQRES 23 A 580 ALA GLN HIS CYS GLU LYS GLN ARG ASP PHE ASP LEU ALA SEQRES 24 A 580 GLN ARG LEU TYR ARG GLN SER SER HIS PRO GLY ALA ARG SEQRES 25 A 580 LEU ARG ALA ILE ARG SER LEU GLU ARG GLY GLU ARG PHE SEQRES 26 A 580 ALA GLU ALA HIS ALA LEU ALA ARG GLU ALA SER CYS ALA SEQRES 27 A 580 PRO GLU SER ASP ALA GLU ARG GLN GLY LEU ALA ARG LEU SEQRES 28 A 580 LEU PRO ARG LEU GLN GLY LYS LEU GLY LEU PRO ARG GLN SEQRES 29 A 580 ALA ARG ALA ALA ALA PRO GLU ILE ASP ARG LEU ASP LEU SEQRES 30 A 580 CYS LEU ALA PHE PRO SER GLU PRO CYS SER VAL GLU TRP SEQRES 31 A 580 ALA VAL ARG GLU HIS LEU GLU GLU PRO GLY CYS ALA VAL SEQRES 32 A 580 HIS TYR VAL GLU ASN GLY LEU ILE ASN SER LEU PHE GLY SEQRES 33 A 580 LEU LEU CYS TRP GLU ALA ILE PHE ALA ALA ILE PRO GLY SEQRES 34 A 580 ALA PHE PHE HIS PRO PHE HIS SER ALA PRO ALA ASP LEU SEQRES 35 A 580 HIS SER ALA ASP PHE ARG GLN ARG ARG ALA ALA LEU PHE SEQRES 36 A 580 GLU ALA CYS LEU GLY ARG LEU GLU ASP GLY SER TYR ARG SEQRES 37 A 580 ASP ALA ILE ARG CYS ARG TYR ARG ASP LYS PHE GLY LEU SEQRES 38 A 580 GLN SER PRO PHE VAL TYR TRP GLU LEU LEU GLY GLU GLU SEQRES 39 A 580 LEU LEU GLU GLN ALA LEU ASP CYS LEU PRO ALA ALA HIS SEQRES 40 A 580 LEU ARG ALA TRP PHE GLU ARG LEU LEU GLU ASP ILE PRO SEQRES 41 A 580 GLY ASN ARG ALA GLY LEU PRO ASP LEU ILE GLN PHE TRP SEQRES 42 A 580 PRO ALA GLN ARG ARG TYR ARG MET VAL GLU VAL LYS GLY SEQRES 43 A 580 PRO GLY ASP ARG LEU GLN ASP ASN GLN LEU ARG TRP LEU SEQRES 44 A 580 GLN PHE CYS ARG GLU ARG GLU MET PRO VAL ALA VAL CYS SEQRES 45 A 580 TYR VAL ARG TRP HIS VAL ASP ASP SEQRES 1 H 10 DG DT DT DG DG DG DA DT DT DG SEQRES 1 B 13 DT DT DC DA DC DA DC DA DT DT DC DA DA SEQRES 1 C 24 DG DA DA DT DG DT DG DT DG DT DC DT DC SEQRES 2 C 24 DA DA DT DC DC DC DA DA DC DT DT HET MN A 601 1 HET MN A 602 1 HETNAM MN MANGANESE (II) ION FORMUL 5 MN 2(MN 2+) FORMUL 7 HOH *(H2 O) HELIX 1 AA1 PHE A 20 TYR A 37 1 18 HELIX 2 AA2 ALA A 38 LEU A 41 5 4 HELIX 3 AA3 ASP A 42 LEU A 55 1 14 HELIX 4 AA4 PRO A 56 MET A 68 1 13 HELIX 5 AA5 ASP A 86 LEU A 97 1 12 HELIX 6 AA6 GLU A 107 LEU A 115 1 9 HELIX 7 AA7 LYS A 116 PHE A 124 1 9 HELIX 8 AA8 ARG A 134 GLN A 143 1 10 HELIX 9 AA9 ARG A 151 GLN A 156 1 6 HELIX 10 AB1 CYS A 168 GLY A 181 1 14 HELIX 11 AB2 SER A 188 LEU A 195 1 8 HELIX 12 AB3 LEU A 214 LEU A 233 1 20 HELIX 13 AB4 PRO A 236 LEU A 244 1 9 HELIX 14 AB5 ASN A 251 GLN A 272 1 22 HELIX 15 AB6 ASP A 274 GLN A 284 1 11 HELIX 16 AB7 GLY A 289 GLY A 301 1 13 HELIX 17 AB8 ARG A 303 SER A 315 1 13 HELIX 18 AB9 SER A 320 LEU A 338 1 19 HELIX 19 AC1 SER A 366 LEU A 375 1 10 HELIX 20 AC2 ASN A 387 CYS A 398 1 12 HELIX 21 AC3 CYS A 398 PHE A 403 1 6 HELIX 22 AC4 ASP A 425 ARG A 440 1 16 HELIX 23 AC5 SER A 445 LYS A 457 1 13 HELIX 24 AC6 GLY A 471 LEU A 482 1 12 HELIX 25 AC7 PRO A 483 ASP A 497 1 15 HELIX 26 AC8 GLN A 531 ARG A 544 1 14 SHEET 1 AA1 2 LEU A 73 ARG A 75 0 SHEET 2 AA1 2 VAL A 163 GLU A 165 -1 O TYR A 164 N PHE A 74 SHEET 1 AA2 5 ARG A 353 ALA A 359 0 SHEET 2 AA2 5 VAL A 548 HIS A 556 1 O VAL A 550 N LEU A 354 SHEET 3 AA2 5 ARG A 517 LYS A 524 1 N LYS A 524 O CYS A 551 SHEET 4 AA2 5 LEU A 508 TRP A 512 -1 N LEU A 508 O VAL A 521 SHEET 5 AA2 5 ALA A 381 TYR A 384 -1 N ALA A 381 O PHE A 511 LINK OE1 GLU A 386 MN MN A 601 1555 1555 2.30 LINK OE2 GLU A 386 MN MN A 601 1555 1555 2.31 LINK OD1 ASP A 507 MN MN A 601 1555 1555 2.26 LINK OD2 ASP A 507 MN MN A 602 1555 1555 2.36 LINK OE2 GLU A 522 MN MN A 602 1555 1555 2.21 LINK O VAL A 523 MN MN A 602 1555 1555 2.80 CISPEP 1 PRO A 361 SER A 362 0 -21.02 CISPEP 2 SER A 362 GLU A 363 0 9.75 CISPEP 3 PRO A 364 CYS A 365 0 0.74 SITE 1 AC1 3 GLU A 386 ASP A 507 MN A 602 SITE 1 AC2 4 ASP A 507 GLU A 522 VAL A 523 MN A 601 CRYST1 80.874 104.969 105.490 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012365 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009527 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009480 0.00000