HEADER METAL BINDING PROTEIN 28-JAN-18 5Z7C TITLE CRYSTAL STRUCTURE OF CYCLIC GMP-AMP SPECIFC PHOSPHODIESTERASES IN TITLE 2 V.CHOLERAE (V-CGAP3) COMPND MOL_ID: 1; COMPND 2 MOLECULE: 3'3'-CGAMP-SPECIFIC PHOSPHODIESTERASE 3; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: V-CGAP3; COMPND 5 EC: 3.1.4.-; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO CHOLERAE O1 BIOVAR EL TOR STR. N16961; SOURCE 3 ORGANISM_TAXID: 243277; SOURCE 4 GENE: VC_A0931; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI-PICHIA PASTORIS SHUTTLE VECTOR SOURCE 6 PPPARG4; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 1182032 KEYWDS CYCLIC DINUCLEOTIDES, PHOSPHODIESTERASE., METAL BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.J.DENG,Z.Y.YE,X.D.SU REVDAT 1 02-JAN-19 5Z7C 0 JRNL AUTH M.J.DENG,J.TAO,C.E,Z.Y.YE,Z.JIANG,J.YU,X.D.SU JRNL TITL NOVEL MECHANISM FOR CYCLIC DINUCLEOTIDE DEGRADATION REVEALED JRNL TITL 2 BY STRUCTURAL STUDIES OF VIBRIO PHOSPHODIESTERASE V-CGAP3. JRNL REF J. MOL. BIOL. V. 430 5080 2018 JRNL REFN ESSN 1089-8638 JRNL PMID 30365951 JRNL DOI 10.1016/J.JMB.2018.10.010 REMARK 2 REMARK 2 RESOLUTION. 2.76 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.2_1309 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.76 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.60 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 26848 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.248 REMARK 3 R VALUE (WORKING SET) : 0.247 REMARK 3 FREE R VALUE : 0.268 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 1352 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.5963 - 5.9304 0.95 2650 135 0.2243 0.2557 REMARK 3 2 5.9304 - 4.7139 0.99 2597 145 0.2463 0.2598 REMARK 3 3 4.7139 - 4.1201 1.00 2566 146 0.2115 0.2361 REMARK 3 4 4.1201 - 3.7443 1.00 2565 129 0.2261 0.2633 REMARK 3 5 3.7443 - 3.4764 1.00 2533 134 0.2550 0.2564 REMARK 3 6 3.4764 - 3.2717 1.00 2527 128 0.2899 0.3045 REMARK 3 7 3.2717 - 3.1081 1.00 2517 132 0.2961 0.3055 REMARK 3 8 3.1081 - 2.9729 1.00 2500 153 0.3096 0.3304 REMARK 3 9 2.9729 - 2.8586 1.00 2507 133 0.3262 0.2920 REMARK 3 10 2.8586 - 2.7600 1.00 2534 117 0.3533 0.3721 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.350 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.870 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.027 3283 REMARK 3 ANGLE : 1.682 4453 REMARK 3 CHIRALITY : 0.128 512 REMARK 3 PLANARITY : 0.020 577 REMARK 3 DIHEDRAL : 17.446 1206 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 53.9313 49.4692 107.9062 REMARK 3 T TENSOR REMARK 3 T11: 0.3134 T22: 0.4846 REMARK 3 T33: 0.4376 T12: 0.1145 REMARK 3 T13: 0.0057 T23: 0.0061 REMARK 3 L TENSOR REMARK 3 L11: 0.8828 L22: 1.7376 REMARK 3 L33: 3.0665 L12: -0.4408 REMARK 3 L13: 0.1887 L23: -0.3446 REMARK 3 S TENSOR REMARK 3 S11: 0.0708 S12: 0.0956 S13: -0.0010 REMARK 3 S21: -0.0850 S22: -0.2391 S23: -0.1804 REMARK 3 S31: -0.1352 S32: 0.3579 S33: 0.1745 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5Z7C COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 06-FEB-18. REMARK 100 THE DEPOSITION ID IS D_1300006609. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-OCT-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97920 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26853 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.760 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 10.50 REMARK 200 R MERGE (I) : 0.08100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.8500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.76 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.89800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 74.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.87 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% (W/V) PEG 3350, 0.2M AMMONIUM REMARK 280 CITRATE TRIBASIC, PH 7.0, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 62 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+2/3 REMARK 290 6555 X-Y,X,Z+1/3 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+2/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 119.47333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 59.73667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 119.47333 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 59.73667 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 119.47333 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 59.73667 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 119.47333 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 59.73667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -20 REMARK 465 GLY A -19 REMARK 465 SER A -18 REMARK 465 SER A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 SER A -10 REMARK 465 SER A -9 REMARK 465 GLY A -8 REMARK 465 LEU A -7 REMARK 465 VAL A -6 REMARK 465 PRO A -5 REMARK 465 ARG A -4 REMARK 465 ALA A 63 REMARK 465 ARG A 64 REMARK 465 ILE A 65 REMARK 465 CYS A 66 REMARK 465 GLU A 67 REMARK 465 LEU A 68 REMARK 465 TYR A 69 REMARK 465 ALA A 70 REMARK 465 THR A 71 REMARK 465 ASP A 72 REMARK 465 ASP A 73 REMARK 465 LEU A 74 REMARK 465 THR A 75 REMARK 465 PHE A 76 REMARK 465 LYS A 77 REMARK 465 ARG A 78 REMARK 465 ARG A 79 REMARK 465 TYR A 80 REMARK 465 LYS A 81 REMARK 465 THR A 82 REMARK 465 GLU A 363 REMARK 465 LYS A 364 REMARK 465 LEU A 365 REMARK 465 ASP A 366 REMARK 465 GLY A 367 REMARK 465 THR A 368 REMARK 465 GLY A 369 REMARK 465 TYR A 370 REMARK 465 PRO A 371 REMARK 465 ARG A 372 REMARK 465 GLY A 373 REMARK 465 VAL A 374 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O MET A 414 O ASN A 417 1.04 REMARK 500 N LYS A 322 OH TYR A 401 1.51 REMARK 500 O ALA A 397 N ARG A 399 1.53 REMARK 500 O GLU A 415 CD2 LEU A 418 1.62 REMARK 500 CB HIS A 191 OE1 GLU A 195 1.65 REMARK 500 CD PRO A 323 OH TYR A 401 1.72 REMARK 500 O ILE A 94 O THR A 98 1.78 REMARK 500 CA LYS A 322 OH TYR A 401 1.78 REMARK 500 O ALA A 145 O GLN A 148 1.83 REMARK 500 N GLU A 16 O ASN A 61 1.87 REMARK 500 O ASN A 317 CD1 LEU A 320 1.88 REMARK 500 ND2 ASN A 61 O LYS A 269 1.92 REMARK 500 O LYS A 322 N GLY A 324 1.93 REMARK 500 O ILE A 171 NH1 ARG A 176 1.94 REMARK 500 CE LYS A 312 CE2 TYR A 340 1.95 REMARK 500 OG SER A 294 OD2 ASP A 297 1.99 REMARK 500 O MET A 414 C ASN A 417 1.99 REMARK 500 CB ALA A 338 N THR A 341 2.02 REMARK 500 C GLU A 415 CD2 LEU A 418 2.06 REMARK 500 CB ALA A 338 CB THR A 341 2.08 REMARK 500 O ARG A 399 CA ARG A 402 2.11 REMARK 500 CD PRO A 323 CZ TYR A 401 2.15 REMARK 500 C MET A 414 O ASN A 417 2.15 REMARK 500 O ASP A 377 OG SER A 380 2.16 REMARK 500 O LEU A 418 CA THR A 420 2.16 REMARK 500 C LEU A 418 N THR A 420 2.16 REMARK 500 O ASN A 317 CD2 LEU A 320 2.17 REMARK 500 CD2 HIS A 191 OE2 GLU A 195 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 19 C - N - CD ANGL. DEV. = -34.7 DEGREES REMARK 500 PRO A 323 C - N - CD ANGL. DEV. = -42.3 DEGREES REMARK 500 PRO A 424 C - N - CD ANGL. DEV. = -17.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 16 -18.20 71.05 REMARK 500 GLN A 18 -59.35 107.85 REMARK 500 ASN A 61 -71.43 -111.58 REMARK 500 THR A 98 142.23 -172.07 REMARK 500 SER A 103 137.29 -38.46 REMARK 500 ASN A 117 147.21 -172.65 REMARK 500 ASN A 119 -103.59 95.66 REMARK 500 HIS A 191 -122.61 -130.70 REMARK 500 VAL A 206 -69.86 -102.73 REMARK 500 ARG A 224 -31.45 92.11 REMARK 500 SER A 316 -151.13 -70.67 REMARK 500 ILE A 319 59.79 35.31 REMARK 500 LEU A 320 75.71 47.59 REMARK 500 LYS A 322 20.26 173.94 REMARK 500 PRO A 323 -52.01 31.33 REMARK 500 LYS A 325 -156.74 -53.85 REMARK 500 LEU A 326 32.69 104.89 REMARK 500 ALA A 329 -58.07 73.67 REMARK 500 ALA A 339 -121.04 61.32 REMARK 500 ALA A 358 31.97 -85.62 REMARK 500 ALA A 397 -22.96 95.83 REMARK 500 GLU A 398 27.03 -42.08 REMARK 500 ALA A 403 63.07 165.25 REMARK 500 LEU A 418 -132.38 -176.38 REMARK 500 HIS A 419 -29.61 6.55 REMARK 500 ASP A 423 174.99 -56.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA A 397 GLU A 398 -144.93 REMARK 500 REMARK 500 REMARK: NULL DBREF 5Z7C A 1 442 UNP Q9KL18 CGAP3_VIBCH 10 451 SEQADV 5Z7C MET A -20 UNP Q9KL18 EXPRESSION TAG SEQADV 5Z7C GLY A -19 UNP Q9KL18 EXPRESSION TAG SEQADV 5Z7C SER A -18 UNP Q9KL18 EXPRESSION TAG SEQADV 5Z7C SER A -17 UNP Q9KL18 EXPRESSION TAG SEQADV 5Z7C HIS A -16 UNP Q9KL18 EXPRESSION TAG SEQADV 5Z7C HIS A -15 UNP Q9KL18 EXPRESSION TAG SEQADV 5Z7C HIS A -14 UNP Q9KL18 EXPRESSION TAG SEQADV 5Z7C HIS A -13 UNP Q9KL18 EXPRESSION TAG SEQADV 5Z7C HIS A -12 UNP Q9KL18 EXPRESSION TAG SEQADV 5Z7C HIS A -11 UNP Q9KL18 EXPRESSION TAG SEQADV 5Z7C SER A -10 UNP Q9KL18 EXPRESSION TAG SEQADV 5Z7C SER A -9 UNP Q9KL18 EXPRESSION TAG SEQADV 5Z7C GLY A -8 UNP Q9KL18 EXPRESSION TAG SEQADV 5Z7C LEU A -7 UNP Q9KL18 EXPRESSION TAG SEQADV 5Z7C VAL A -6 UNP Q9KL18 EXPRESSION TAG SEQADV 5Z7C PRO A -5 UNP Q9KL18 EXPRESSION TAG SEQADV 5Z7C ARG A -4 UNP Q9KL18 EXPRESSION TAG SEQADV 5Z7C GLY A -3 UNP Q9KL18 EXPRESSION TAG SEQADV 5Z7C SER A -2 UNP Q9KL18 EXPRESSION TAG SEQADV 5Z7C HIS A -1 UNP Q9KL18 EXPRESSION TAG SEQADV 5Z7C MET A 0 UNP Q9KL18 EXPRESSION TAG SEQADV 5Z7C ALA A 431 UNP Q9KL18 LYS 440 ENGINEERED MUTATION SEQADV 5Z7C ALA A 432 UNP Q9KL18 LYS 441 ENGINEERED MUTATION SEQRES 1 A 463 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 463 LEU VAL PRO ARG GLY SER HIS MET LEU SER GLU LEU MET SEQRES 3 A 463 ILE SER LEU THR THR ALA LEU ASP MET THR GLU GLY GLN SEQRES 4 A 463 PRO PRO GLU HIS CYS ILE ARG CYS CYS TRP ILE GLY MET SEQRES 5 A 463 HIS ILE GLY MET GLN LEU GLU LEU SER GLU PRO GLU LEU SEQRES 6 A 463 HIS ASP LEU PHE PHE THR LEU LEU LEU LYS ASP ALA GLY SEQRES 7 A 463 CYS SER SER ASN ALA ALA ARG ILE CYS GLU LEU TYR ALA SEQRES 8 A 463 THR ASP ASP LEU THR PHE LYS ARG ARG TYR LYS THR VAL SEQRES 9 A 463 GLY THR SER LEU SER SER VAL ILE ASN PHE ILE VAL LYS SEQRES 10 A 463 ASN THR GLY SER GLU GLN SER TRP THR GLU ARG ILE LEU SEQRES 11 A 463 THR THR ILE ASP ILE LEU LYS ASN GLY ASN ASP TYR ALA SEQRES 12 A 463 GLN GLU LEU ILE GLN THR ARG CYS THR ARG GLY ALA ASP SEQRES 13 A 463 VAL ALA ARG GLU LEU ARG PHE SER GLU ALA VAL ALA GLN SEQRES 14 A 463 GLY ILE HIS SER LEU ASP GLU HIS TRP ASN GLY GLN GLY SEQRES 15 A 463 ARG PRO GLU GLN ARG LYS GLY GLU ALA ILE PRO LEU PHE SEQRES 16 A 463 SER ARG ILE ALA LEU LEU ALA GLN VAL PHE ASP VAL PHE SEQRES 17 A 463 GLN MET GLU HIS SER ILE GLU GLU ALA LEU GLN GLU ILE SEQRES 18 A 463 MET ALA ARG SER GLY VAL TRP PHE ASP PRO LYS LEU VAL SEQRES 19 A 463 GLU VAL VAL GLU GLN LEU VAL GLU ASN PRO ARG PHE LEU SEQRES 20 A 463 SER GLY LEU LYS ALA THR ASP ILE SER GLN ARG VAL MET SEQRES 21 A 463 ASN LEU PRO PRO ALA GLN ALA HIS LEU PRO LEU ASP ASP SEQRES 22 A 463 ALA TYR LEU GLU CYS ILE VAL THR ALA PHE GLY LYS ILE SEQRES 23 A 463 VAL ASP ALA LYS SER PRO TYR THR ALA GLY HIS SER GLU SEQRES 24 A 463 ARG VAL ALA VAL TYR THR ASP LEU ILE ALA ARG GLN LEU SEQRES 25 A 463 ALA ILE SER ASP ALA ASP ARG ILE TRP LEU ARG ARG ALA SEQRES 26 A 463 ALA LEU LEU HIS ASP ILE GLY LYS LEU GLY VAL SER ASN SEQRES 27 A 463 ALA ILE LEU ASP LYS PRO GLY LYS LEU ASP GLU ALA GLU SEQRES 28 A 463 TRP ARG ALA VAL GLN ALA HIS ALA ALA TYR THR GLU GLN SEQRES 29 A 463 ILE LEU TYR LYS LEU SER PRO PHE LYS THR LEU ALA ARG SEQRES 30 A 463 MET ALA GLY ALA HIS HIS GLU LYS LEU ASP GLY THR GLY SEQRES 31 A 463 TYR PRO ARG GLY VAL ASN GLY ASP GLU ILE SER LEU MET SEQRES 32 A 463 THR ARG ILE ILE THR THR ALA ASP ILE PHE ASP ALA LEU SEQRES 33 A 463 SER ALA GLU ARG PRO TYR ARG ALA ALA MET PRO ILE ASP SEQRES 34 A 463 LYS ALA LEU ALA ILE MET GLU GLU ASN LEU HIS THR ALA SEQRES 35 A 463 ILE ASP PRO GLU CYS PHE ALA ALA LEU ALA ALA ALA LEU SEQRES 36 A 463 ASN LEU LEU PRO ASP GLU TYR THR FORMUL 2 HOH *20(H2 O) HELIX 1 AA1 LEU A 1 THR A 15 1 15 HELIX 2 AA2 GLU A 21 GLN A 36 1 16 HELIX 3 AA3 SER A 40 LEU A 53 1 14 HELIX 4 AA4 SER A 86 THR A 98 1 13 HELIX 5 AA5 SER A 103 ASN A 117 1 15 HELIX 6 AA6 ASN A 119 LEU A 140 1 22 HELIX 7 AA7 SER A 143 GLN A 148 1 6 HELIX 8 AA8 LYS A 167 ILE A 171 5 5 HELIX 9 AA9 PRO A 172 HIS A 191 1 20 HELIX 10 AB1 SER A 192 SER A 204 1 13 HELIX 11 AB2 ASP A 209 ASN A 222 1 14 HELIX 12 AB3 ARG A 224 LYS A 230 1 7 HELIX 13 AB4 ASP A 233 ASN A 240 1 8 HELIX 14 AB5 PRO A 243 HIS A 247 5 5 HELIX 15 AB6 ASP A 251 SER A 270 1 20 HELIX 16 AB7 GLY A 275 LEU A 291 1 17 HELIX 17 AB8 SER A 294 HIS A 308 1 15 HELIX 18 AB9 ALA A 336 SER A 349 1 14 HELIX 19 AC1 LYS A 352 ALA A 358 1 7 HELIX 20 AC2 GLY A 376 SER A 396 1 21 HELIX 21 AC3 PRO A 406 ASN A 417 1 12 HELIX 22 AC4 PRO A 424 LEU A 436 1 13 SHEET 1 AA1 2 HIS A -1 MET A 0 0 SHEET 2 AA1 2 PRO A 249 LEU A 250 -1 O LEU A 250 N HIS A -1 LINK OE2 GLU A 16 NZ LYS A 269 1555 1555 1.39 LINK O LEU A 418 N THR A 420 1555 1555 1.31 CISPEP 1 THR A 98 GLY A 99 0 0.12 CISPEP 2 ASN A 117 GLY A 118 0 0.07 CISPEP 3 GLY A 118 ASN A 119 0 0.11 CISPEP 4 ARG A 162 PRO A 163 0 5.23 CISPEP 5 ASN A 317 ALA A 318 0 -10.53 CISPEP 6 ILE A 319 LEU A 320 0 -2.95 CISPEP 7 LEU A 320 ASP A 321 0 -2.49 CISPEP 8 ALA A 338 ALA A 339 0 -12.12 CISPEP 9 PRO A 400 TYR A 401 0 -1.79 CRYST1 139.360 139.360 179.210 90.00 90.00 120.00 P 62 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007176 0.004143 0.000000 0.00000 SCALE2 0.000000 0.008286 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005580 0.00000