data_5Z7I # _entry.id 5Z7I # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5Z7I pdb_00005z7i 10.2210/pdb5z7i/pdb WWPDB D_1300006608 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2018-03-21 2 'Structure model' 1 1 2018-04-18 3 'Structure model' 1 2 2024-03-27 4 'Structure model' 1 3 2024-04-03 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Database references' 5 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 3 'Structure model' chem_comp_atom 3 3 'Structure model' chem_comp_bond 4 3 'Structure model' database_2 5 4 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.page_first' 3 2 'Structure model' '_citation.page_last' 4 3 'Structure model' '_database_2.pdbx_DOI' 5 3 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5Z7I _pdbx_database_status.recvd_initial_deposition_date 2018-01-29 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Wu, X.' 1 ? 'Zhang, Y.' 2 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_id_ASTM NARHAD _citation.journal_id_CSD 0389 _citation.journal_id_ISSN 1362-4962 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 46 _citation.language ? _citation.page_first 3245 _citation.page_last 3256 _citation.title 'Structural insights into the unique mechanism of transcription activation by Caulobacter crescentus GcrA.' _citation.year 2018 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1093/nar/gky161 _citation.pdbx_database_id_PubMed 29514271 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Wu, X.' 1 ? primary 'Haakonsen, D.L.' 2 ? primary 'Sanderlin, A.G.' 3 ? primary 'Liu, Y.J.' 4 ? primary 'Shen, L.' 5 ? primary 'Zhuang, N.' 6 ? primary 'Laub, M.T.' 7 ? primary 'Zhang, Y.' 8 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Cell cycle regulatory protein GcrA' 5317.199 3 ? ? ? ? 2 polymer syn ;DNA (5'-D(*CP*CP*CP*TP*GP*AP*TP*TP*CP*GP*C*)-3') ; 3285.148 1 ? ? ? ? 3 polymer syn ;DNA (5'-D(P*GP*CP*GP*AP*AP*TP*CP*AP*GP*G)-3') ; 3094.042 1 ? ? ? ? 4 non-polymer syn '(R,R)-2,3-BUTANEDIOL' 90.121 1 ? ? ? ? 5 water nat water 18.015 173 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no GAMDMSWTDERVSTLKKLWLDGLSASQIAKQLGGVTRNAVIGKVHRLGL GAMDMSWTDERVSTLKKLWLDGLSASQIAKQLGGVTRNAVIGKVHRLGL A,B,C ? 2 polydeoxyribonucleotide no no '(DC)(DC)(DC)(DT)(DG)(DA)(DT)(DT)(DC)(DG)(DC)' CCCTGATTCGC D ? 3 polydeoxyribonucleotide no no '(DG)(DC)(DG)(DA)(DA)(DT)(DC)(DA)(DG)(DG)' GCGAATCAGG E ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 '(R,R)-2,3-BUTANEDIOL' BU3 5 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 ALA n 1 3 MET n 1 4 ASP n 1 5 MET n 1 6 SER n 1 7 TRP n 1 8 THR n 1 9 ASP n 1 10 GLU n 1 11 ARG n 1 12 VAL n 1 13 SER n 1 14 THR n 1 15 LEU n 1 16 LYS n 1 17 LYS n 1 18 LEU n 1 19 TRP n 1 20 LEU n 1 21 ASP n 1 22 GLY n 1 23 LEU n 1 24 SER n 1 25 ALA n 1 26 SER n 1 27 GLN n 1 28 ILE n 1 29 ALA n 1 30 LYS n 1 31 GLN n 1 32 LEU n 1 33 GLY n 1 34 GLY n 1 35 VAL n 1 36 THR n 1 37 ARG n 1 38 ASN n 1 39 ALA n 1 40 VAL n 1 41 ILE n 1 42 GLY n 1 43 LYS n 1 44 VAL n 1 45 HIS n 1 46 ARG n 1 47 LEU n 1 48 GLY n 1 49 LEU n 2 1 DC n 2 2 DC n 2 3 DC n 2 4 DT n 2 5 DG n 2 6 DA n 2 7 DT n 2 8 DT n 2 9 DC n 2 10 DG n 2 11 DC n 3 1 DG n 3 2 DC n 3 3 DG n 3 4 DA n 3 5 DA n 3 6 DT n 3 7 DC n 3 8 DA n 3 9 DG n 3 10 DG n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 49 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'gcrA, CCNA_02328' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'NA1000 / CB15N' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Caulobacter crescentus (strain NA1000 / CB15N)' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 565050 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details pRT28a _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name plasmid _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 2 1 sample 1 11 'synthetic construct' ? 32630 ? 3 1 sample 1 10 'synthetic construct' ? 32630 ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 BU3 non-polymer . '(R,R)-2,3-BUTANEDIOL' ? 'C4 H10 O2' 90.121 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 -3 ? ? ? A . n A 1 2 ALA 2 -2 ? ? ? A . n A 1 3 MET 3 -1 ? ? ? A . n A 1 4 ASP 4 0 ? ? ? A . n A 1 5 MET 5 1 1 MET MET A . n A 1 6 SER 6 2 2 SER SER A . n A 1 7 TRP 7 3 3 TRP TRP A . n A 1 8 THR 8 4 4 THR THR A . n A 1 9 ASP 9 5 5 ASP ASP A . n A 1 10 GLU 10 6 6 GLU GLU A . n A 1 11 ARG 11 7 7 ARG ARG A . n A 1 12 VAL 12 8 8 VAL VAL A . n A 1 13 SER 13 9 9 SER SER A . n A 1 14 THR 14 10 10 THR THR A . n A 1 15 LEU 15 11 11 LEU LEU A . n A 1 16 LYS 16 12 12 LYS LYS A . n A 1 17 LYS 17 13 13 LYS LYS A . n A 1 18 LEU 18 14 14 LEU LEU A . n A 1 19 TRP 19 15 15 TRP TRP A . n A 1 20 LEU 20 16 16 LEU LEU A . n A 1 21 ASP 21 17 17 ASP ASP A . n A 1 22 GLY 22 18 18 GLY GLY A . n A 1 23 LEU 23 19 19 LEU LEU A . n A 1 24 SER 24 20 20 SER SER A . n A 1 25 ALA 25 21 21 ALA ALA A . n A 1 26 SER 26 22 22 SER SER A . n A 1 27 GLN 27 23 23 GLN GLN A . n A 1 28 ILE 28 24 24 ILE ILE A . n A 1 29 ALA 29 25 25 ALA ALA A . n A 1 30 LYS 30 26 26 LYS LYS A . n A 1 31 GLN 31 27 27 GLN GLN A . n A 1 32 LEU 32 28 28 LEU LEU A . n A 1 33 GLY 33 29 29 GLY GLY A . n A 1 34 GLY 34 30 30 GLY GLY A . n A 1 35 VAL 35 31 31 VAL VAL A . n A 1 36 THR 36 32 32 THR THR A . n A 1 37 ARG 37 33 33 ARG ARG A . n A 1 38 ASN 38 34 34 ASN ASN A . n A 1 39 ALA 39 35 35 ALA ALA A . n A 1 40 VAL 40 36 36 VAL VAL A . n A 1 41 ILE 41 37 37 ILE ILE A . n A 1 42 GLY 42 38 38 GLY GLY A . n A 1 43 LYS 43 39 39 LYS LYS A . n A 1 44 VAL 44 40 40 VAL VAL A . n A 1 45 HIS 45 41 41 HIS HIS A . n A 1 46 ARG 46 42 42 ARG ARG A . n A 1 47 LEU 47 43 43 LEU LEU A . n A 1 48 GLY 48 44 44 GLY GLY A . n A 1 49 LEU 49 45 45 LEU LEU A . n B 1 1 GLY 1 -3 ? ? ? B . n B 1 2 ALA 2 -2 ? ? ? B . n B 1 3 MET 3 -1 ? ? ? B . n B 1 4 ASP 4 0 ? ? ? B . n B 1 5 MET 5 1 1 MET MET B . n B 1 6 SER 6 2 2 SER SER B . n B 1 7 TRP 7 3 3 TRP TRP B . n B 1 8 THR 8 4 4 THR THR B . n B 1 9 ASP 9 5 5 ASP ASP B . n B 1 10 GLU 10 6 6 GLU GLU B . n B 1 11 ARG 11 7 7 ARG ARG B . n B 1 12 VAL 12 8 8 VAL VAL B . n B 1 13 SER 13 9 9 SER SER B . n B 1 14 THR 14 10 10 THR THR B . n B 1 15 LEU 15 11 11 LEU LEU B . n B 1 16 LYS 16 12 12 LYS LYS B . n B 1 17 LYS 17 13 13 LYS LYS B . n B 1 18 LEU 18 14 14 LEU LEU B . n B 1 19 TRP 19 15 15 TRP TRP B . n B 1 20 LEU 20 16 16 LEU LEU B . n B 1 21 ASP 21 17 17 ASP ASP B . n B 1 22 GLY 22 18 18 GLY GLY B . n B 1 23 LEU 23 19 19 LEU LEU B . n B 1 24 SER 24 20 20 SER SER B . n B 1 25 ALA 25 21 21 ALA ALA B . n B 1 26 SER 26 22 22 SER SER B . n B 1 27 GLN 27 23 23 GLN GLN B . n B 1 28 ILE 28 24 24 ILE ILE B . n B 1 29 ALA 29 25 25 ALA ALA B . n B 1 30 LYS 30 26 26 LYS LYS B . n B 1 31 GLN 31 27 27 GLN GLN B . n B 1 32 LEU 32 28 28 LEU LEU B . n B 1 33 GLY 33 29 29 GLY GLY B . n B 1 34 GLY 34 30 30 GLY GLY B . n B 1 35 VAL 35 31 31 VAL VAL B . n B 1 36 THR 36 32 32 THR THR B . n B 1 37 ARG 37 33 33 ARG ARG B . n B 1 38 ASN 38 34 34 ASN ASN B . n B 1 39 ALA 39 35 35 ALA ALA B . n B 1 40 VAL 40 36 36 VAL VAL B . n B 1 41 ILE 41 37 37 ILE ILE B . n B 1 42 GLY 42 38 38 GLY GLY B . n B 1 43 LYS 43 39 39 LYS LYS B . n B 1 44 VAL 44 40 40 VAL VAL B . n B 1 45 HIS 45 41 41 HIS HIS B . n B 1 46 ARG 46 42 42 ARG ARG B . n B 1 47 LEU 47 43 43 LEU LEU B . n B 1 48 GLY 48 44 44 GLY GLY B . n B 1 49 LEU 49 45 45 LEU LEU B . n C 1 1 GLY 1 -3 ? ? ? C . n C 1 2 ALA 2 -2 ? ? ? C . n C 1 3 MET 3 -1 ? ? ? C . n C 1 4 ASP 4 0 ? ? ? C . n C 1 5 MET 5 1 1 MET MET C . n C 1 6 SER 6 2 2 SER SER C . n C 1 7 TRP 7 3 3 TRP TRP C . n C 1 8 THR 8 4 4 THR THR C . n C 1 9 ASP 9 5 5 ASP ASP C . n C 1 10 GLU 10 6 6 GLU ALA C . n C 1 11 ARG 11 7 7 ARG ARG C . n C 1 12 VAL 12 8 8 VAL VAL C . n C 1 13 SER 13 9 9 SER SER C . n C 1 14 THR 14 10 10 THR THR C . n C 1 15 LEU 15 11 11 LEU LEU C . n C 1 16 LYS 16 12 12 LYS LYS C . n C 1 17 LYS 17 13 13 LYS LYS C . n C 1 18 LEU 18 14 14 LEU LEU C . n C 1 19 TRP 19 15 15 TRP TRP C . n C 1 20 LEU 20 16 16 LEU LEU C . n C 1 21 ASP 21 17 17 ASP ASP C . n C 1 22 GLY 22 18 18 GLY GLY C . n C 1 23 LEU 23 19 19 LEU LEU C . n C 1 24 SER 24 20 20 SER SER C . n C 1 25 ALA 25 21 21 ALA ALA C . n C 1 26 SER 26 22 22 SER SER C . n C 1 27 GLN 27 23 23 GLN GLN C . n C 1 28 ILE 28 24 24 ILE ILE C . n C 1 29 ALA 29 25 25 ALA ALA C . n C 1 30 LYS 30 26 26 LYS LYS C . n C 1 31 GLN 31 27 27 GLN GLN C . n C 1 32 LEU 32 28 28 LEU LEU C . n C 1 33 GLY 33 29 29 GLY GLY C . n C 1 34 GLY 34 30 30 GLY GLY C . n C 1 35 VAL 35 31 31 VAL VAL C . n C 1 36 THR 36 32 32 THR THR C . n C 1 37 ARG 37 33 33 ARG ARG C . n C 1 38 ASN 38 34 34 ASN ASN C . n C 1 39 ALA 39 35 35 ALA ALA C . n C 1 40 VAL 40 36 36 VAL VAL C . n C 1 41 ILE 41 37 37 ILE ILE C . n C 1 42 GLY 42 38 38 GLY GLY C . n C 1 43 LYS 43 39 39 LYS LYS C . n C 1 44 VAL 44 40 40 VAL VAL C . n C 1 45 HIS 45 41 41 HIS HIS C . n C 1 46 ARG 46 42 42 ARG ARG C . n C 1 47 LEU 47 43 43 LEU LEU C . n C 1 48 GLY 48 44 44 GLY GLY C . n C 1 49 LEU 49 45 45 LEU LEU C . n D 2 1 DC 1 1 1 DC DC D . n D 2 2 DC 2 2 2 DC DC D . n D 2 3 DC 3 3 3 DC DC D . n D 2 4 DT 4 4 4 DT DT D . n D 2 5 DG 5 5 5 DG DG D . n D 2 6 DA 6 6 6 DA DA D . n D 2 7 DT 7 7 7 DT DT D . n D 2 8 DT 8 8 8 DT DT D . n D 2 9 DC 9 9 9 DC DC D . n D 2 10 DG 10 10 10 DG DG D . n D 2 11 DC 11 11 11 DC DC D . n E 3 1 DG 1 2 2 DG DG E . n E 3 2 DC 2 3 3 DC DC E . n E 3 3 DG 3 4 4 DG DG E . n E 3 4 DA 4 5 5 DA DA E . n E 3 5 DA 5 6 6 DA DA E . n E 3 6 DT 6 7 7 DT DT E . n E 3 7 DC 7 8 8 DC DC E . n E 3 8 DA 8 9 9 DA DA E . n E 3 9 DG 9 10 10 DG DG E . n E 3 10 DG 10 11 11 DG DG E . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code F 4 BU3 1 1000 1000 BU3 BU3 D . G 5 HOH 1 101 19 HOH HOH A . G 5 HOH 2 102 104 HOH HOH A . G 5 HOH 3 103 128 HOH HOH A . G 5 HOH 4 104 64 HOH HOH A . G 5 HOH 5 105 14 HOH HOH A . G 5 HOH 6 106 4 HOH HOH A . G 5 HOH 7 107 116 HOH HOH A . G 5 HOH 8 108 145 HOH HOH A . G 5 HOH 9 109 88 HOH HOH A . G 5 HOH 10 110 21 HOH HOH A . G 5 HOH 11 111 156 HOH HOH A . G 5 HOH 12 112 60 HOH HOH A . G 5 HOH 13 113 36 HOH HOH A . G 5 HOH 14 114 27 HOH HOH A . G 5 HOH 15 115 120 HOH HOH A . G 5 HOH 16 116 39 HOH HOH A . G 5 HOH 17 117 40 HOH HOH A . G 5 HOH 18 118 17 HOH HOH A . G 5 HOH 19 119 73 HOH HOH A . G 5 HOH 20 120 81 HOH HOH A . G 5 HOH 21 121 129 HOH HOH A . G 5 HOH 22 122 114 HOH HOH A . G 5 HOH 23 123 102 HOH HOH A . G 5 HOH 24 124 164 HOH HOH A . G 5 HOH 25 125 84 HOH HOH A . G 5 HOH 26 126 176 HOH HOH A . G 5 HOH 27 127 37 HOH HOH A . G 5 HOH 28 128 61 HOH HOH A . G 5 HOH 29 129 161 HOH HOH A . G 5 HOH 30 130 200 HOH HOH A . G 5 HOH 31 131 119 HOH HOH A . G 5 HOH 32 132 51 HOH HOH A . G 5 HOH 33 133 153 HOH HOH A . G 5 HOH 34 134 101 HOH HOH A . G 5 HOH 35 135 121 HOH HOH A . G 5 HOH 36 136 167 HOH HOH A . G 5 HOH 37 137 169 HOH HOH A . G 5 HOH 38 138 57 HOH HOH A . G 5 HOH 39 139 193 HOH HOH A . G 5 HOH 40 140 182 HOH HOH A . G 5 HOH 41 141 196 HOH HOH A . G 5 HOH 42 142 191 HOH HOH A . G 5 HOH 43 143 70 HOH HOH A . G 5 HOH 44 144 170 HOH HOH A . G 5 HOH 45 145 172 HOH HOH A . G 5 HOH 46 146 206 HOH HOH A . H 5 HOH 1 101 134 HOH HOH B . H 5 HOH 2 102 54 HOH HOH B . H 5 HOH 3 103 38 HOH HOH B . H 5 HOH 4 104 155 HOH HOH B . H 5 HOH 5 105 162 HOH HOH B . H 5 HOH 6 106 67 HOH HOH B . H 5 HOH 7 107 63 HOH HOH B . H 5 HOH 8 108 46 HOH HOH B . H 5 HOH 9 109 49 HOH HOH B . H 5 HOH 10 110 12 HOH HOH B . H 5 HOH 11 111 66 HOH HOH B . H 5 HOH 12 112 34 HOH HOH B . H 5 HOH 13 113 99 HOH HOH B . H 5 HOH 14 114 30 HOH HOH B . H 5 HOH 15 115 79 HOH HOH B . H 5 HOH 16 116 151 HOH HOH B . H 5 HOH 17 117 118 HOH HOH B . H 5 HOH 18 118 42 HOH HOH B . H 5 HOH 19 119 139 HOH HOH B . H 5 HOH 20 120 165 HOH HOH B . H 5 HOH 21 121 47 HOH HOH B . H 5 HOH 22 122 23 HOH HOH B . H 5 HOH 23 123 55 HOH HOH B . H 5 HOH 24 124 100 HOH HOH B . H 5 HOH 25 125 117 HOH HOH B . H 5 HOH 26 126 43 HOH HOH B . H 5 HOH 27 127 85 HOH HOH B . H 5 HOH 28 128 110 HOH HOH B . H 5 HOH 29 129 168 HOH HOH B . H 5 HOH 30 130 82 HOH HOH B . H 5 HOH 31 131 171 HOH HOH B . I 5 HOH 1 101 107 HOH HOH C . I 5 HOH 2 102 140 HOH HOH C . I 5 HOH 3 103 33 HOH HOH C . I 5 HOH 4 104 113 HOH HOH C . I 5 HOH 5 105 135 HOH HOH C . I 5 HOH 6 106 45 HOH HOH C . I 5 HOH 7 107 59 HOH HOH C . I 5 HOH 8 108 132 HOH HOH C . I 5 HOH 9 109 137 HOH HOH C . I 5 HOH 10 110 186 HOH HOH C . I 5 HOH 11 111 185 HOH HOH C . I 5 HOH 12 112 41 HOH HOH C . I 5 HOH 13 113 18 HOH HOH C . I 5 HOH 14 114 131 HOH HOH C . I 5 HOH 15 115 92 HOH HOH C . I 5 HOH 16 116 148 HOH HOH C . I 5 HOH 17 117 143 HOH HOH C . I 5 HOH 18 118 146 HOH HOH C . I 5 HOH 19 119 122 HOH HOH C . I 5 HOH 20 120 77 HOH HOH C . I 5 HOH 21 121 94 HOH HOH C . I 5 HOH 22 122 58 HOH HOH C . I 5 HOH 23 123 183 HOH HOH C . I 5 HOH 24 124 157 HOH HOH C . I 5 HOH 25 125 130 HOH HOH C . I 5 HOH 26 126 173 HOH HOH C . I 5 HOH 27 127 108 HOH HOH C . I 5 HOH 28 128 203 HOH HOH C . J 5 HOH 1 1101 2 HOH HOH D . J 5 HOH 2 1102 163 HOH HOH D . J 5 HOH 3 1103 76 HOH HOH D . J 5 HOH 4 1104 205 HOH HOH D . J 5 HOH 5 1105 48 HOH HOH D . J 5 HOH 6 1106 75 HOH HOH D . J 5 HOH 7 1107 83 HOH HOH D . J 5 HOH 8 1108 62 HOH HOH D . J 5 HOH 9 1109 80 HOH HOH D . J 5 HOH 10 1110 149 HOH HOH D . J 5 HOH 11 1111 53 HOH HOH D . J 5 HOH 12 1112 56 HOH HOH D . J 5 HOH 13 1113 5 HOH HOH D . J 5 HOH 14 1114 124 HOH HOH D . J 5 HOH 15 1115 20 HOH HOH D . J 5 HOH 16 1116 123 HOH HOH D . J 5 HOH 17 1117 72 HOH HOH D . J 5 HOH 18 1118 31 HOH HOH D . J 5 HOH 19 1119 69 HOH HOH D . J 5 HOH 20 1120 16 HOH HOH D . J 5 HOH 21 1121 7 HOH HOH D . J 5 HOH 22 1122 35 HOH HOH D . J 5 HOH 23 1123 159 HOH HOH D . J 5 HOH 24 1124 15 HOH HOH D . J 5 HOH 25 1125 26 HOH HOH D . J 5 HOH 26 1126 9 HOH HOH D . J 5 HOH 27 1127 202 HOH HOH D . J 5 HOH 28 1128 68 HOH HOH D . J 5 HOH 29 1129 201 HOH HOH D . J 5 HOH 30 1130 179 HOH HOH D . J 5 HOH 31 1131 105 HOH HOH D . J 5 HOH 32 1132 86 HOH HOH D . J 5 HOH 33 1133 112 HOH HOH D . J 5 HOH 34 1134 91 HOH HOH D . J 5 HOH 35 1135 95 HOH HOH D . J 5 HOH 36 1136 97 HOH HOH D . K 5 HOH 1 101 28 HOH HOH E . K 5 HOH 2 102 78 HOH HOH E . K 5 HOH 3 103 44 HOH HOH E . K 5 HOH 4 104 115 HOH HOH E . K 5 HOH 5 105 144 HOH HOH E . K 5 HOH 6 106 10 HOH HOH E . K 5 HOH 7 107 22 HOH HOH E . K 5 HOH 8 108 11 HOH HOH E . K 5 HOH 9 109 127 HOH HOH E . K 5 HOH 10 110 25 HOH HOH E . K 5 HOH 11 111 8 HOH HOH E . K 5 HOH 12 112 32 HOH HOH E . K 5 HOH 13 113 6 HOH HOH E . K 5 HOH 14 114 24 HOH HOH E . K 5 HOH 15 115 71 HOH HOH E . K 5 HOH 16 116 136 HOH HOH E . K 5 HOH 17 117 184 HOH HOH E . K 5 HOH 18 118 3 HOH HOH E . K 5 HOH 19 119 13 HOH HOH E . K 5 HOH 20 120 52 HOH HOH E . K 5 HOH 21 121 103 HOH HOH E . K 5 HOH 22 122 125 HOH HOH E . K 5 HOH 23 123 126 HOH HOH E . K 5 HOH 24 124 109 HOH HOH E . K 5 HOH 25 125 98 HOH HOH E . K 5 HOH 26 126 90 HOH HOH E . K 5 HOH 27 127 150 HOH HOH E . K 5 HOH 28 128 65 HOH HOH E . K 5 HOH 29 129 29 HOH HOH E . K 5 HOH 30 130 195 HOH HOH E . K 5 HOH 31 131 166 HOH HOH E . K 5 HOH 32 132 93 HOH HOH E . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A MET 1 ? CG ? A MET 5 CG 2 1 Y 1 A MET 1 ? SD ? A MET 5 SD 3 1 Y 1 A MET 1 ? CE ? A MET 5 CE 4 1 Y 1 B MET 1 ? CG ? B MET 5 CG 5 1 Y 1 B MET 1 ? SD ? B MET 5 SD 6 1 Y 1 B MET 1 ? CE ? B MET 5 CE 7 1 Y 1 B GLU 6 ? CG ? B GLU 10 CG 8 1 Y 1 B GLU 6 ? CD ? B GLU 10 CD 9 1 Y 1 B GLU 6 ? OE1 ? B GLU 10 OE1 10 1 Y 1 B GLU 6 ? OE2 ? B GLU 10 OE2 11 1 Y 1 B LYS 13 ? CG ? B LYS 17 CG 12 1 Y 1 B LYS 13 ? CD ? B LYS 17 CD 13 1 Y 1 B LYS 13 ? CE ? B LYS 17 CE 14 1 Y 1 B LYS 13 ? NZ ? B LYS 17 NZ 15 1 Y 1 B LYS 26 ? CG ? B LYS 30 CG 16 1 Y 1 B LYS 26 ? CD ? B LYS 30 CD 17 1 Y 1 B LYS 26 ? CE ? B LYS 30 CE 18 1 Y 1 B LYS 26 ? NZ ? B LYS 30 NZ 19 1 Y 1 C MET 1 ? CG ? C MET 5 CG 20 1 Y 1 C MET 1 ? SD ? C MET 5 SD 21 1 Y 1 C MET 1 ? CE ? C MET 5 CE 22 1 Y 1 C GLU 6 ? CG ? C GLU 10 CG 23 1 Y 1 C GLU 6 ? CD ? C GLU 10 CD 24 1 Y 1 C GLU 6 ? OE1 ? C GLU 10 OE1 25 1 Y 1 C GLU 6 ? OE2 ? C GLU 10 OE2 26 1 Y 1 C LYS 13 ? CG ? C LYS 17 CG 27 1 Y 1 C LYS 13 ? CD ? C LYS 17 CD 28 1 Y 1 C LYS 13 ? CE ? C LYS 17 CE 29 1 Y 1 C LYS 13 ? NZ ? C LYS 17 NZ # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.9_1692 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? iMOSFLM ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? SCALA ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? BALBES ? ? ? . 4 # _cell.entry_id 5Z7I _cell.length_a 49.909 _cell.length_b 64.896 _cell.length_c 126.474 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5Z7I _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5Z7I _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.32 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 47 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 295 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '20% PEG 8000, 0.05M Potassium phosphate monobasic' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS3 S 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2016-04-18 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.979 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SSRF BEAMLINE BL17U1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.979 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL17U1 _diffrn_source.pdbx_synchrotron_site SSRF # _reflns.B_iso_Wilson_estimate 24.37 _reflns.entry_id 5Z7I _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.60 _reflns.d_resolution_low 50 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 27384 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.6 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 7.2 _reflns.pdbx_Rmerge_I_obs 0.08 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value 0.08 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 22.05 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all 0.03 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.99 _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 1.60 _reflns_shell.d_res_low 1.63 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 2.1 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.percent_possible_all 100 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.93 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 7.1 _reflns_shell.pdbx_Rsym_value 0.93 _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all 0.38 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.959 _reflns_shell.pdbx_R_split ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 5Z7I _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 27251 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.35 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 28.869 _refine.ls_d_res_high 1.601 _refine.ls_percent_reflns_obs 99.21 _refine.ls_R_factor_obs 0.2013 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2001 _refine.ls_R_factor_R_free 0.2236 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.93 _refine.ls_number_reflns_R_free 1344 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.details ? _refine.pdbx_starting_model IGV2 _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.16 _refine.pdbx_overall_phase_error 25.90 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1009 _refine_hist.pdbx_number_atoms_nucleic_acid 426 _refine_hist.pdbx_number_atoms_ligand 6 _refine_hist.number_atoms_solvent 173 _refine_hist.number_atoms_total 1614 _refine_hist.d_res_high 1.601 _refine_hist.d_res_low 28.869 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.007 ? ? 1522 'X-RAY DIFFRACTION' ? f_angle_d 0.963 ? ? 2149 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 21.268 ? ? 574 'X-RAY DIFFRACTION' ? f_chiral_restr 0.038 ? ? 259 'X-RAY DIFFRACTION' ? f_plane_restr 0.006 ? ? 191 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.number_reflns_obs 'X-RAY DIFFRACTION' . 1.6010 1.6583 2522 0.2810 98.00 0.3208 . . 119 . . . . 'X-RAY DIFFRACTION' . 1.6583 1.7246 2517 0.2483 98.00 0.2692 . . 139 . . . . 'X-RAY DIFFRACTION' . 1.7246 1.8031 2556 0.2239 100.00 0.2469 . . 142 . . . . 'X-RAY DIFFRACTION' . 1.8031 1.8982 2584 0.2288 100.00 0.2475 . . 143 . . . . 'X-RAY DIFFRACTION' . 1.8982 2.0171 2577 0.2236 100.00 0.2490 . . 130 . . . . 'X-RAY DIFFRACTION' . 2.0171 2.1728 2603 0.2068 100.00 0.2127 . . 143 . . . . 'X-RAY DIFFRACTION' . 2.1728 2.3913 2617 0.2144 100.00 0.2464 . . 120 . . . . 'X-RAY DIFFRACTION' . 2.3913 2.7371 2640 0.2177 100.00 0.2767 . . 124 . . . . 'X-RAY DIFFRACTION' . 2.7371 3.4476 2602 0.2042 99.00 0.2267 . . 140 . . . . 'X-RAY DIFFRACTION' . 3.4476 28.8740 2689 0.1731 98.00 0.1910 . . 144 . . . . # _struct.entry_id 5Z7I _struct.title 'Caulobacter crescentus GcrA DNA-binding domain(DBD)in complex with unmethylated dsDNA' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5Z7I _struct_keywords.text 'Caulobacter crescentus, GcrA, DNA-binding, transcription factor, DNA binding protein, DNA BINDING PROTEIN-DNA complex' _struct_keywords.pdbx_keywords 'DNA BINDING PROTEIN/DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 2 ? E N N 3 ? F N N 4 ? G N N 5 ? H N N 5 ? I N N 5 ? J N N 5 ? K N N 5 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP A0A0H3C9J4_CAUCN A0A0H3C9J4 ? 1 MSWTDERVSTLKKLWLDGLSASQIAKQLGGVTRNAVIGKVHRLGL 1 2 PDB 5Z7I 5Z7I ? 2 ? 1 3 PDB 5Z7I 5Z7I ? 3 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 5Z7I A 5 ? 49 ? A0A0H3C9J4 1 ? 45 ? 1 45 2 1 5Z7I B 5 ? 49 ? A0A0H3C9J4 1 ? 45 ? 1 45 3 1 5Z7I C 5 ? 49 ? A0A0H3C9J4 1 ? 45 ? 1 45 4 2 5Z7I D 1 ? 11 ? 5Z7I 1 ? 11 ? 1 11 5 3 5Z7I E 1 ? 10 ? 5Z7I 2 ? 11 ? 2 11 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 5Z7I GLY A 1 ? UNP A0A0H3C9J4 ? ? 'expression tag' -3 1 1 5Z7I ALA A 2 ? UNP A0A0H3C9J4 ? ? 'expression tag' -2 2 1 5Z7I MET A 3 ? UNP A0A0H3C9J4 ? ? 'expression tag' -1 3 1 5Z7I ASP A 4 ? UNP A0A0H3C9J4 ? ? 'expression tag' 0 4 2 5Z7I GLY B 1 ? UNP A0A0H3C9J4 ? ? 'expression tag' -3 5 2 5Z7I ALA B 2 ? UNP A0A0H3C9J4 ? ? 'expression tag' -2 6 2 5Z7I MET B 3 ? UNP A0A0H3C9J4 ? ? 'expression tag' -1 7 2 5Z7I ASP B 4 ? UNP A0A0H3C9J4 ? ? 'expression tag' 0 8 3 5Z7I GLY C 1 ? UNP A0A0H3C9J4 ? ? 'expression tag' -3 9 3 5Z7I ALA C 2 ? UNP A0A0H3C9J4 ? ? 'expression tag' -2 10 3 5Z7I MET C 3 ? UNP A0A0H3C9J4 ? ? 'expression tag' -1 11 3 5Z7I ASP C 4 ? UNP A0A0H3C9J4 ? ? 'expression tag' 0 12 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA trimeric 3 2 author_and_software_defined_assembly PISA monomeric 1 3 author_and_software_defined_assembly PISA monomeric 1 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2530 ? 1 MORE -17 ? 1 'SSA (A^2)' 5770 ? 2 'ABSA (A^2)' 0 ? 2 MORE 0 ? 2 'SSA (A^2)' 2970 ? 3 'ABSA (A^2)' 0 ? 3 MORE 0 ? 3 'SSA (A^2)' 2910 ? # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,D,E,F,G,J,K 2 1 B,H 3 1 C,I # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 THR A 8 ? ASP A 21 ? THR A 4 ASP A 17 1 ? 14 HELX_P HELX_P2 AA2 SER A 24 ? GLY A 33 ? SER A 20 GLY A 29 1 ? 10 HELX_P HELX_P3 AA3 THR A 36 ? GLY A 48 ? THR A 32 GLY A 44 1 ? 13 HELX_P HELX_P4 AA4 THR B 8 ? ASP B 21 ? THR B 4 ASP B 17 1 ? 14 HELX_P HELX_P5 AA5 SER B 24 ? GLY B 33 ? SER B 20 GLY B 29 1 ? 10 HELX_P HELX_P6 AA6 THR B 36 ? LEU B 47 ? THR B 32 LEU B 43 1 ? 12 HELX_P HELX_P7 AA7 THR C 8 ? ASP C 21 ? THR C 4 ASP C 17 1 ? 14 HELX_P HELX_P8 AA8 SER C 24 ? GLY C 33 ? SER C 20 GLY C 29 1 ? 10 HELX_P HELX_P9 AA9 THR C 36 ? GLY C 48 ? THR C 32 GLY C 44 1 ? 13 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? D DC 2 N3 ? ? ? 1_555 E DG 10 N1 ? ? D DC 2 E DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? D DC 2 N4 ? ? ? 1_555 E DG 10 O6 ? ? D DC 2 E DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? D DC 2 O2 ? ? ? 1_555 E DG 10 N2 ? ? D DC 2 E DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? D DC 3 N3 ? ? ? 1_555 E DG 9 N1 ? ? D DC 3 E DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? D DC 3 N4 ? ? ? 1_555 E DG 9 O6 ? ? D DC 3 E DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? D DC 3 O2 ? ? ? 1_555 E DG 9 N2 ? ? D DC 3 E DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? D DT 4 N3 ? ? ? 1_555 E DA 8 N1 ? ? D DT 4 E DA 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? D DT 4 O4 ? ? ? 1_555 E DA 8 N6 ? ? D DT 4 E DA 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? D DG 5 N1 ? ? ? 1_555 E DC 7 N3 ? ? D DG 5 E DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? D DG 5 N2 ? ? ? 1_555 E DC 7 O2 ? ? D DG 5 E DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? D DG 5 O6 ? ? ? 1_555 E DC 7 N4 ? ? D DG 5 E DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? D DA 6 N1 ? ? ? 1_555 E DT 6 N3 ? ? D DA 6 E DT 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? D DA 6 N6 ? ? ? 1_555 E DT 6 O4 ? ? D DA 6 E DT 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? D DT 7 N3 ? ? ? 1_555 E DA 5 N1 ? ? D DT 7 E DA 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? D DT 7 O4 ? ? ? 1_555 E DA 5 N6 ? ? D DT 7 E DA 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? D DT 8 N3 ? ? ? 1_555 E DA 4 N1 ? ? D DT 8 E DA 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? D DT 8 O4 ? ? ? 1_555 E DA 4 N6 ? ? D DT 8 E DA 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? D DC 9 N3 ? ? ? 1_555 E DG 3 N1 ? ? D DC 9 E DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? D DC 9 N4 ? ? ? 1_555 E DG 3 O6 ? ? D DC 9 E DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? D DC 9 O2 ? ? ? 1_555 E DG 3 N2 ? ? D DC 9 E DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? D DG 10 N1 ? ? ? 1_555 E DC 2 N3 ? ? D DG 10 E DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? D DG 10 N2 ? ? ? 1_555 E DC 2 O2 ? ? D DG 10 E DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? D DG 10 O6 ? ? ? 1_555 E DC 2 N4 ? ? D DG 10 E DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? D DC 11 N3 ? ? ? 1_555 E DG 1 N1 ? ? D DC 11 E DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? D DC 11 N4 ? ? ? 1_555 E DG 1 O6 ? ? D DC 11 E DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? D DC 11 O2 ? ? ? 1_555 E DG 1 N2 ? ? D DC 11 E DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id D _struct_site.pdbx_auth_comp_id BU3 _struct_site.pdbx_auth_seq_id 1000 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 7 _struct_site.details 'binding site for residue BU3 D 1000' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 7 ASN B 38 ? ASN B 34 . ? 5_445 ? 2 AC1 7 DG D 10 ? DG D 10 . ? 1_555 ? 3 AC1 7 DC D 11 ? DC D 11 . ? 1_555 ? 4 AC1 7 HOH J . ? HOH D 1101 . ? 1_555 ? 5 AC1 7 HOH J . ? HOH D 1115 . ? 1_555 ? 6 AC1 7 DG E 3 ? DG E 4 . ? 1_555 ? 7 AC1 7 DA E 4 ? DA E 5 . ? 1_555 ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" D DG 5 ? ? "C1'" D DG 5 ? ? N9 D DG 5 ? ? 110.37 108.30 2.07 0.30 N 2 1 "O4'" E DA 9 ? ? "C1'" E DA 9 ? ? N9 E DA 9 ? ? 110.46 108.30 2.16 0.30 N # _pdbx_distant_solvent_atoms.id 1 _pdbx_distant_solvent_atoms.PDB_model_num 1 _pdbx_distant_solvent_atoms.auth_atom_id O _pdbx_distant_solvent_atoms.label_alt_id ? _pdbx_distant_solvent_atoms.auth_asym_id D _pdbx_distant_solvent_atoms.auth_comp_id HOH _pdbx_distant_solvent_atoms.auth_seq_id 1136 _pdbx_distant_solvent_atoms.PDB_ins_code ? _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance 6.23 _pdbx_distant_solvent_atoms.neighbor_ligand_distance . # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY -3 ? A GLY 1 2 1 Y 1 A ALA -2 ? A ALA 2 3 1 Y 1 A MET -1 ? A MET 3 4 1 Y 1 A ASP 0 ? A ASP 4 5 1 Y 1 B GLY -3 ? B GLY 1 6 1 Y 1 B ALA -2 ? B ALA 2 7 1 Y 1 B MET -1 ? B MET 3 8 1 Y 1 B ASP 0 ? B ASP 4 9 1 Y 1 C GLY -3 ? C GLY 1 10 1 Y 1 C ALA -2 ? C ALA 2 11 1 Y 1 C MET -1 ? C MET 3 12 1 Y 1 C ASP 0 ? C ASP 4 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 BU3 O6 O N N 74 BU3 C3 C N R 75 BU3 C4 C N N 76 BU3 C2 C N R 77 BU3 O5 O N N 78 BU3 C1 C N N 79 BU3 HO6 H N N 80 BU3 H3 H N N 81 BU3 H41 H N N 82 BU3 H42 H N N 83 BU3 H43 H N N 84 BU3 H2 H N N 85 BU3 HO5 H N N 86 BU3 H11 H N N 87 BU3 H12 H N N 88 BU3 H13 H N N 89 DA OP3 O N N 90 DA P P N N 91 DA OP1 O N N 92 DA OP2 O N N 93 DA "O5'" O N N 94 DA "C5'" C N N 95 DA "C4'" C N R 96 DA "O4'" O N N 97 DA "C3'" C N S 98 DA "O3'" O N N 99 DA "C2'" C N N 100 DA "C1'" C N R 101 DA N9 N Y N 102 DA C8 C Y N 103 DA N7 N Y N 104 DA C5 C Y N 105 DA C6 C Y N 106 DA N6 N N N 107 DA N1 N Y N 108 DA C2 C Y N 109 DA N3 N Y N 110 DA C4 C Y N 111 DA HOP3 H N N 112 DA HOP2 H N N 113 DA "H5'" H N N 114 DA "H5''" H N N 115 DA "H4'" H N N 116 DA "H3'" H N N 117 DA "HO3'" H N N 118 DA "H2'" H N N 119 DA "H2''" H N N 120 DA "H1'" H N N 121 DA H8 H N N 122 DA H61 H N N 123 DA H62 H N N 124 DA H2 H N N 125 DC OP3 O N N 126 DC P P N N 127 DC OP1 O N N 128 DC OP2 O N N 129 DC "O5'" O N N 130 DC "C5'" C N N 131 DC "C4'" C N R 132 DC "O4'" O N N 133 DC "C3'" C N S 134 DC "O3'" O N N 135 DC "C2'" C N N 136 DC "C1'" C N R 137 DC N1 N N N 138 DC C2 C N N 139 DC O2 O N N 140 DC N3 N N N 141 DC C4 C N N 142 DC N4 N N N 143 DC C5 C N N 144 DC C6 C N N 145 DC HOP3 H N N 146 DC HOP2 H N N 147 DC "H5'" H N N 148 DC "H5''" H N N 149 DC "H4'" H N N 150 DC "H3'" H N N 151 DC "HO3'" H N N 152 DC "H2'" H N N 153 DC "H2''" H N N 154 DC "H1'" H N N 155 DC H41 H N N 156 DC H42 H N N 157 DC H5 H N N 158 DC H6 H N N 159 DG OP3 O N N 160 DG P P N N 161 DG OP1 O N N 162 DG OP2 O N N 163 DG "O5'" O N N 164 DG "C5'" C N N 165 DG "C4'" C N R 166 DG "O4'" O N N 167 DG "C3'" C N S 168 DG "O3'" O N N 169 DG "C2'" C N N 170 DG "C1'" C N R 171 DG N9 N Y N 172 DG C8 C Y N 173 DG N7 N Y N 174 DG C5 C Y N 175 DG C6 C N N 176 DG O6 O N N 177 DG N1 N N N 178 DG C2 C N N 179 DG N2 N N N 180 DG N3 N N N 181 DG C4 C Y N 182 DG HOP3 H N N 183 DG HOP2 H N N 184 DG "H5'" H N N 185 DG "H5''" H N N 186 DG "H4'" H N N 187 DG "H3'" H N N 188 DG "HO3'" H N N 189 DG "H2'" H N N 190 DG "H2''" H N N 191 DG "H1'" H N N 192 DG H8 H N N 193 DG H1 H N N 194 DG H21 H N N 195 DG H22 H N N 196 DT OP3 O N N 197 DT P P N N 198 DT OP1 O N N 199 DT OP2 O N N 200 DT "O5'" O N N 201 DT "C5'" C N N 202 DT "C4'" C N R 203 DT "O4'" O N N 204 DT "C3'" C N S 205 DT "O3'" O N N 206 DT "C2'" C N N 207 DT "C1'" C N R 208 DT N1 N N N 209 DT C2 C N N 210 DT O2 O N N 211 DT N3 N N N 212 DT C4 C N N 213 DT O4 O N N 214 DT C5 C N N 215 DT C7 C N N 216 DT C6 C N N 217 DT HOP3 H N N 218 DT HOP2 H N N 219 DT "H5'" H N N 220 DT "H5''" H N N 221 DT "H4'" H N N 222 DT "H3'" H N N 223 DT "HO3'" H N N 224 DT "H2'" H N N 225 DT "H2''" H N N 226 DT "H1'" H N N 227 DT H3 H N N 228 DT H71 H N N 229 DT H72 H N N 230 DT H73 H N N 231 DT H6 H N N 232 GLN N N N N 233 GLN CA C N S 234 GLN C C N N 235 GLN O O N N 236 GLN CB C N N 237 GLN CG C N N 238 GLN CD C N N 239 GLN OE1 O N N 240 GLN NE2 N N N 241 GLN OXT O N N 242 GLN H H N N 243 GLN H2 H N N 244 GLN HA H N N 245 GLN HB2 H N N 246 GLN HB3 H N N 247 GLN HG2 H N N 248 GLN HG3 H N N 249 GLN HE21 H N N 250 GLN HE22 H N N 251 GLN HXT H N N 252 GLU N N N N 253 GLU CA C N S 254 GLU C C N N 255 GLU O O N N 256 GLU CB C N N 257 GLU CG C N N 258 GLU CD C N N 259 GLU OE1 O N N 260 GLU OE2 O N N 261 GLU OXT O N N 262 GLU H H N N 263 GLU H2 H N N 264 GLU HA H N N 265 GLU HB2 H N N 266 GLU HB3 H N N 267 GLU HG2 H N N 268 GLU HG3 H N N 269 GLU HE2 H N N 270 GLU HXT H N N 271 GLY N N N N 272 GLY CA C N N 273 GLY C C N N 274 GLY O O N N 275 GLY OXT O N N 276 GLY H H N N 277 GLY H2 H N N 278 GLY HA2 H N N 279 GLY HA3 H N N 280 GLY HXT H N N 281 HIS N N N N 282 HIS CA C N S 283 HIS C C N N 284 HIS O O N N 285 HIS CB C N N 286 HIS CG C Y N 287 HIS ND1 N Y N 288 HIS CD2 C Y N 289 HIS CE1 C Y N 290 HIS NE2 N Y N 291 HIS OXT O N N 292 HIS H H N N 293 HIS H2 H N N 294 HIS HA H N N 295 HIS HB2 H N N 296 HIS HB3 H N N 297 HIS HD1 H N N 298 HIS HD2 H N N 299 HIS HE1 H N N 300 HIS HE2 H N N 301 HIS HXT H N N 302 HOH O O N N 303 HOH H1 H N N 304 HOH H2 H N N 305 ILE N N N N 306 ILE CA C N S 307 ILE C C N N 308 ILE O O N N 309 ILE CB C N S 310 ILE CG1 C N N 311 ILE CG2 C N N 312 ILE CD1 C N N 313 ILE OXT O N N 314 ILE H H N N 315 ILE H2 H N N 316 ILE HA H N N 317 ILE HB H N N 318 ILE HG12 H N N 319 ILE HG13 H N N 320 ILE HG21 H N N 321 ILE HG22 H N N 322 ILE HG23 H N N 323 ILE HD11 H N N 324 ILE HD12 H N N 325 ILE HD13 H N N 326 ILE HXT H N N 327 LEU N N N N 328 LEU CA C N S 329 LEU C C N N 330 LEU O O N N 331 LEU CB C N N 332 LEU CG C N N 333 LEU CD1 C N N 334 LEU CD2 C N N 335 LEU OXT O N N 336 LEU H H N N 337 LEU H2 H N N 338 LEU HA H N N 339 LEU HB2 H N N 340 LEU HB3 H N N 341 LEU HG H N N 342 LEU HD11 H N N 343 LEU HD12 H N N 344 LEU HD13 H N N 345 LEU HD21 H N N 346 LEU HD22 H N N 347 LEU HD23 H N N 348 LEU HXT H N N 349 LYS N N N N 350 LYS CA C N S 351 LYS C C N N 352 LYS O O N N 353 LYS CB C N N 354 LYS CG C N N 355 LYS CD C N N 356 LYS CE C N N 357 LYS NZ N N N 358 LYS OXT O N N 359 LYS H H N N 360 LYS H2 H N N 361 LYS HA H N N 362 LYS HB2 H N N 363 LYS HB3 H N N 364 LYS HG2 H N N 365 LYS HG3 H N N 366 LYS HD2 H N N 367 LYS HD3 H N N 368 LYS HE2 H N N 369 LYS HE3 H N N 370 LYS HZ1 H N N 371 LYS HZ2 H N N 372 LYS HZ3 H N N 373 LYS HXT H N N 374 MET N N N N 375 MET CA C N S 376 MET C C N N 377 MET O O N N 378 MET CB C N N 379 MET CG C N N 380 MET SD S N N 381 MET CE C N N 382 MET OXT O N N 383 MET H H N N 384 MET H2 H N N 385 MET HA H N N 386 MET HB2 H N N 387 MET HB3 H N N 388 MET HG2 H N N 389 MET HG3 H N N 390 MET HE1 H N N 391 MET HE2 H N N 392 MET HE3 H N N 393 MET HXT H N N 394 SER N N N N 395 SER CA C N S 396 SER C C N N 397 SER O O N N 398 SER CB C N N 399 SER OG O N N 400 SER OXT O N N 401 SER H H N N 402 SER H2 H N N 403 SER HA H N N 404 SER HB2 H N N 405 SER HB3 H N N 406 SER HG H N N 407 SER HXT H N N 408 THR N N N N 409 THR CA C N S 410 THR C C N N 411 THR O O N N 412 THR CB C N R 413 THR OG1 O N N 414 THR CG2 C N N 415 THR OXT O N N 416 THR H H N N 417 THR H2 H N N 418 THR HA H N N 419 THR HB H N N 420 THR HG1 H N N 421 THR HG21 H N N 422 THR HG22 H N N 423 THR HG23 H N N 424 THR HXT H N N 425 TRP N N N N 426 TRP CA C N S 427 TRP C C N N 428 TRP O O N N 429 TRP CB C N N 430 TRP CG C Y N 431 TRP CD1 C Y N 432 TRP CD2 C Y N 433 TRP NE1 N Y N 434 TRP CE2 C Y N 435 TRP CE3 C Y N 436 TRP CZ2 C Y N 437 TRP CZ3 C Y N 438 TRP CH2 C Y N 439 TRP OXT O N N 440 TRP H H N N 441 TRP H2 H N N 442 TRP HA H N N 443 TRP HB2 H N N 444 TRP HB3 H N N 445 TRP HD1 H N N 446 TRP HE1 H N N 447 TRP HE3 H N N 448 TRP HZ2 H N N 449 TRP HZ3 H N N 450 TRP HH2 H N N 451 TRP HXT H N N 452 VAL N N N N 453 VAL CA C N S 454 VAL C C N N 455 VAL O O N N 456 VAL CB C N N 457 VAL CG1 C N N 458 VAL CG2 C N N 459 VAL OXT O N N 460 VAL H H N N 461 VAL H2 H N N 462 VAL HA H N N 463 VAL HB H N N 464 VAL HG11 H N N 465 VAL HG12 H N N 466 VAL HG13 H N N 467 VAL HG21 H N N 468 VAL HG22 H N N 469 VAL HG23 H N N 470 VAL HXT H N N 471 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 BU3 O6 C3 sing N N 70 BU3 O6 HO6 sing N N 71 BU3 C3 C4 sing N N 72 BU3 C3 C2 sing N N 73 BU3 C3 H3 sing N N 74 BU3 C4 H41 sing N N 75 BU3 C4 H42 sing N N 76 BU3 C4 H43 sing N N 77 BU3 C2 O5 sing N N 78 BU3 C2 C1 sing N N 79 BU3 C2 H2 sing N N 80 BU3 O5 HO5 sing N N 81 BU3 C1 H11 sing N N 82 BU3 C1 H12 sing N N 83 BU3 C1 H13 sing N N 84 DA OP3 P sing N N 85 DA OP3 HOP3 sing N N 86 DA P OP1 doub N N 87 DA P OP2 sing N N 88 DA P "O5'" sing N N 89 DA OP2 HOP2 sing N N 90 DA "O5'" "C5'" sing N N 91 DA "C5'" "C4'" sing N N 92 DA "C5'" "H5'" sing N N 93 DA "C5'" "H5''" sing N N 94 DA "C4'" "O4'" sing N N 95 DA "C4'" "C3'" sing N N 96 DA "C4'" "H4'" sing N N 97 DA "O4'" "C1'" sing N N 98 DA "C3'" "O3'" sing N N 99 DA "C3'" "C2'" sing N N 100 DA "C3'" "H3'" sing N N 101 DA "O3'" "HO3'" sing N N 102 DA "C2'" "C1'" sing N N 103 DA "C2'" "H2'" sing N N 104 DA "C2'" "H2''" sing N N 105 DA "C1'" N9 sing N N 106 DA "C1'" "H1'" sing N N 107 DA N9 C8 sing Y N 108 DA N9 C4 sing Y N 109 DA C8 N7 doub Y N 110 DA C8 H8 sing N N 111 DA N7 C5 sing Y N 112 DA C5 C6 sing Y N 113 DA C5 C4 doub Y N 114 DA C6 N6 sing N N 115 DA C6 N1 doub Y N 116 DA N6 H61 sing N N 117 DA N6 H62 sing N N 118 DA N1 C2 sing Y N 119 DA C2 N3 doub Y N 120 DA C2 H2 sing N N 121 DA N3 C4 sing Y N 122 DC OP3 P sing N N 123 DC OP3 HOP3 sing N N 124 DC P OP1 doub N N 125 DC P OP2 sing N N 126 DC P "O5'" sing N N 127 DC OP2 HOP2 sing N N 128 DC "O5'" "C5'" sing N N 129 DC "C5'" "C4'" sing N N 130 DC "C5'" "H5'" sing N N 131 DC "C5'" "H5''" sing N N 132 DC "C4'" "O4'" sing N N 133 DC "C4'" "C3'" sing N N 134 DC "C4'" "H4'" sing N N 135 DC "O4'" "C1'" sing N N 136 DC "C3'" "O3'" sing N N 137 DC "C3'" "C2'" sing N N 138 DC "C3'" "H3'" sing N N 139 DC "O3'" "HO3'" sing N N 140 DC "C2'" "C1'" sing N N 141 DC "C2'" "H2'" sing N N 142 DC "C2'" "H2''" sing N N 143 DC "C1'" N1 sing N N 144 DC "C1'" "H1'" sing N N 145 DC N1 C2 sing N N 146 DC N1 C6 sing N N 147 DC C2 O2 doub N N 148 DC C2 N3 sing N N 149 DC N3 C4 doub N N 150 DC C4 N4 sing N N 151 DC C4 C5 sing N N 152 DC N4 H41 sing N N 153 DC N4 H42 sing N N 154 DC C5 C6 doub N N 155 DC C5 H5 sing N N 156 DC C6 H6 sing N N 157 DG OP3 P sing N N 158 DG OP3 HOP3 sing N N 159 DG P OP1 doub N N 160 DG P OP2 sing N N 161 DG P "O5'" sing N N 162 DG OP2 HOP2 sing N N 163 DG "O5'" "C5'" sing N N 164 DG "C5'" "C4'" sing N N 165 DG "C5'" "H5'" sing N N 166 DG "C5'" "H5''" sing N N 167 DG "C4'" "O4'" sing N N 168 DG "C4'" "C3'" sing N N 169 DG "C4'" "H4'" sing N N 170 DG "O4'" "C1'" sing N N 171 DG "C3'" "O3'" sing N N 172 DG "C3'" "C2'" sing N N 173 DG "C3'" "H3'" sing N N 174 DG "O3'" "HO3'" sing N N 175 DG "C2'" "C1'" sing N N 176 DG "C2'" "H2'" sing N N 177 DG "C2'" "H2''" sing N N 178 DG "C1'" N9 sing N N 179 DG "C1'" "H1'" sing N N 180 DG N9 C8 sing Y N 181 DG N9 C4 sing Y N 182 DG C8 N7 doub Y N 183 DG C8 H8 sing N N 184 DG N7 C5 sing Y N 185 DG C5 C6 sing N N 186 DG C5 C4 doub Y N 187 DG C6 O6 doub N N 188 DG C6 N1 sing N N 189 DG N1 C2 sing N N 190 DG N1 H1 sing N N 191 DG C2 N2 sing N N 192 DG C2 N3 doub N N 193 DG N2 H21 sing N N 194 DG N2 H22 sing N N 195 DG N3 C4 sing N N 196 DT OP3 P sing N N 197 DT OP3 HOP3 sing N N 198 DT P OP1 doub N N 199 DT P OP2 sing N N 200 DT P "O5'" sing N N 201 DT OP2 HOP2 sing N N 202 DT "O5'" "C5'" sing N N 203 DT "C5'" "C4'" sing N N 204 DT "C5'" "H5'" sing N N 205 DT "C5'" "H5''" sing N N 206 DT "C4'" "O4'" sing N N 207 DT "C4'" "C3'" sing N N 208 DT "C4'" "H4'" sing N N 209 DT "O4'" "C1'" sing N N 210 DT "C3'" "O3'" sing N N 211 DT "C3'" "C2'" sing N N 212 DT "C3'" "H3'" sing N N 213 DT "O3'" "HO3'" sing N N 214 DT "C2'" "C1'" sing N N 215 DT "C2'" "H2'" sing N N 216 DT "C2'" "H2''" sing N N 217 DT "C1'" N1 sing N N 218 DT "C1'" "H1'" sing N N 219 DT N1 C2 sing N N 220 DT N1 C6 sing N N 221 DT C2 O2 doub N N 222 DT C2 N3 sing N N 223 DT N3 C4 sing N N 224 DT N3 H3 sing N N 225 DT C4 O4 doub N N 226 DT C4 C5 sing N N 227 DT C5 C7 sing N N 228 DT C5 C6 doub N N 229 DT C7 H71 sing N N 230 DT C7 H72 sing N N 231 DT C7 H73 sing N N 232 DT C6 H6 sing N N 233 GLN N CA sing N N 234 GLN N H sing N N 235 GLN N H2 sing N N 236 GLN CA C sing N N 237 GLN CA CB sing N N 238 GLN CA HA sing N N 239 GLN C O doub N N 240 GLN C OXT sing N N 241 GLN CB CG sing N N 242 GLN CB HB2 sing N N 243 GLN CB HB3 sing N N 244 GLN CG CD sing N N 245 GLN CG HG2 sing N N 246 GLN CG HG3 sing N N 247 GLN CD OE1 doub N N 248 GLN CD NE2 sing N N 249 GLN NE2 HE21 sing N N 250 GLN NE2 HE22 sing N N 251 GLN OXT HXT sing N N 252 GLU N CA sing N N 253 GLU N H sing N N 254 GLU N H2 sing N N 255 GLU CA C sing N N 256 GLU CA CB sing N N 257 GLU CA HA sing N N 258 GLU C O doub N N 259 GLU C OXT sing N N 260 GLU CB CG sing N N 261 GLU CB HB2 sing N N 262 GLU CB HB3 sing N N 263 GLU CG CD sing N N 264 GLU CG HG2 sing N N 265 GLU CG HG3 sing N N 266 GLU CD OE1 doub N N 267 GLU CD OE2 sing N N 268 GLU OE2 HE2 sing N N 269 GLU OXT HXT sing N N 270 GLY N CA sing N N 271 GLY N H sing N N 272 GLY N H2 sing N N 273 GLY CA C sing N N 274 GLY CA HA2 sing N N 275 GLY CA HA3 sing N N 276 GLY C O doub N N 277 GLY C OXT sing N N 278 GLY OXT HXT sing N N 279 HIS N CA sing N N 280 HIS N H sing N N 281 HIS N H2 sing N N 282 HIS CA C sing N N 283 HIS CA CB sing N N 284 HIS CA HA sing N N 285 HIS C O doub N N 286 HIS C OXT sing N N 287 HIS CB CG sing N N 288 HIS CB HB2 sing N N 289 HIS CB HB3 sing N N 290 HIS CG ND1 sing Y N 291 HIS CG CD2 doub Y N 292 HIS ND1 CE1 doub Y N 293 HIS ND1 HD1 sing N N 294 HIS CD2 NE2 sing Y N 295 HIS CD2 HD2 sing N N 296 HIS CE1 NE2 sing Y N 297 HIS CE1 HE1 sing N N 298 HIS NE2 HE2 sing N N 299 HIS OXT HXT sing N N 300 HOH O H1 sing N N 301 HOH O H2 sing N N 302 ILE N CA sing N N 303 ILE N H sing N N 304 ILE N H2 sing N N 305 ILE CA C sing N N 306 ILE CA CB sing N N 307 ILE CA HA sing N N 308 ILE C O doub N N 309 ILE C OXT sing N N 310 ILE CB CG1 sing N N 311 ILE CB CG2 sing N N 312 ILE CB HB sing N N 313 ILE CG1 CD1 sing N N 314 ILE CG1 HG12 sing N N 315 ILE CG1 HG13 sing N N 316 ILE CG2 HG21 sing N N 317 ILE CG2 HG22 sing N N 318 ILE CG2 HG23 sing N N 319 ILE CD1 HD11 sing N N 320 ILE CD1 HD12 sing N N 321 ILE CD1 HD13 sing N N 322 ILE OXT HXT sing N N 323 LEU N CA sing N N 324 LEU N H sing N N 325 LEU N H2 sing N N 326 LEU CA C sing N N 327 LEU CA CB sing N N 328 LEU CA HA sing N N 329 LEU C O doub N N 330 LEU C OXT sing N N 331 LEU CB CG sing N N 332 LEU CB HB2 sing N N 333 LEU CB HB3 sing N N 334 LEU CG CD1 sing N N 335 LEU CG CD2 sing N N 336 LEU CG HG sing N N 337 LEU CD1 HD11 sing N N 338 LEU CD1 HD12 sing N N 339 LEU CD1 HD13 sing N N 340 LEU CD2 HD21 sing N N 341 LEU CD2 HD22 sing N N 342 LEU CD2 HD23 sing N N 343 LEU OXT HXT sing N N 344 LYS N CA sing N N 345 LYS N H sing N N 346 LYS N H2 sing N N 347 LYS CA C sing N N 348 LYS CA CB sing N N 349 LYS CA HA sing N N 350 LYS C O doub N N 351 LYS C OXT sing N N 352 LYS CB CG sing N N 353 LYS CB HB2 sing N N 354 LYS CB HB3 sing N N 355 LYS CG CD sing N N 356 LYS CG HG2 sing N N 357 LYS CG HG3 sing N N 358 LYS CD CE sing N N 359 LYS CD HD2 sing N N 360 LYS CD HD3 sing N N 361 LYS CE NZ sing N N 362 LYS CE HE2 sing N N 363 LYS CE HE3 sing N N 364 LYS NZ HZ1 sing N N 365 LYS NZ HZ2 sing N N 366 LYS NZ HZ3 sing N N 367 LYS OXT HXT sing N N 368 MET N CA sing N N 369 MET N H sing N N 370 MET N H2 sing N N 371 MET CA C sing N N 372 MET CA CB sing N N 373 MET CA HA sing N N 374 MET C O doub N N 375 MET C OXT sing N N 376 MET CB CG sing N N 377 MET CB HB2 sing N N 378 MET CB HB3 sing N N 379 MET CG SD sing N N 380 MET CG HG2 sing N N 381 MET CG HG3 sing N N 382 MET SD CE sing N N 383 MET CE HE1 sing N N 384 MET CE HE2 sing N N 385 MET CE HE3 sing N N 386 MET OXT HXT sing N N 387 SER N CA sing N N 388 SER N H sing N N 389 SER N H2 sing N N 390 SER CA C sing N N 391 SER CA CB sing N N 392 SER CA HA sing N N 393 SER C O doub N N 394 SER C OXT sing N N 395 SER CB OG sing N N 396 SER CB HB2 sing N N 397 SER CB HB3 sing N N 398 SER OG HG sing N N 399 SER OXT HXT sing N N 400 THR N CA sing N N 401 THR N H sing N N 402 THR N H2 sing N N 403 THR CA C sing N N 404 THR CA CB sing N N 405 THR CA HA sing N N 406 THR C O doub N N 407 THR C OXT sing N N 408 THR CB OG1 sing N N 409 THR CB CG2 sing N N 410 THR CB HB sing N N 411 THR OG1 HG1 sing N N 412 THR CG2 HG21 sing N N 413 THR CG2 HG22 sing N N 414 THR CG2 HG23 sing N N 415 THR OXT HXT sing N N 416 TRP N CA sing N N 417 TRP N H sing N N 418 TRP N H2 sing N N 419 TRP CA C sing N N 420 TRP CA CB sing N N 421 TRP CA HA sing N N 422 TRP C O doub N N 423 TRP C OXT sing N N 424 TRP CB CG sing N N 425 TRP CB HB2 sing N N 426 TRP CB HB3 sing N N 427 TRP CG CD1 doub Y N 428 TRP CG CD2 sing Y N 429 TRP CD1 NE1 sing Y N 430 TRP CD1 HD1 sing N N 431 TRP CD2 CE2 doub Y N 432 TRP CD2 CE3 sing Y N 433 TRP NE1 CE2 sing Y N 434 TRP NE1 HE1 sing N N 435 TRP CE2 CZ2 sing Y N 436 TRP CE3 CZ3 doub Y N 437 TRP CE3 HE3 sing N N 438 TRP CZ2 CH2 doub Y N 439 TRP CZ2 HZ2 sing N N 440 TRP CZ3 CH2 sing Y N 441 TRP CZ3 HZ3 sing N N 442 TRP CH2 HH2 sing N N 443 TRP OXT HXT sing N N 444 VAL N CA sing N N 445 VAL N H sing N N 446 VAL N H2 sing N N 447 VAL CA C sing N N 448 VAL CA CB sing N N 449 VAL CA HA sing N N 450 VAL C O doub N N 451 VAL C OXT sing N N 452 VAL CB CG1 sing N N 453 VAL CB CG2 sing N N 454 VAL CB HB sing N N 455 VAL CG1 HG11 sing N N 456 VAL CG1 HG12 sing N N 457 VAL CG1 HG13 sing N N 458 VAL CG2 HG21 sing N N 459 VAL CG2 HG22 sing N N 460 VAL CG2 HG23 sing N N 461 VAL OXT HXT sing N N 462 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 5Z7I 'double helix' 5Z7I 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 D DC 2 1_555 E DG 10 1_555 0.358 -0.187 -0.058 9.439 -14.775 -0.345 1 D_DC2:DG11_E D 2 ? E 11 ? 19 1 1 D DC 3 1_555 E DG 9 1_555 0.133 -0.212 0.203 -0.882 -14.955 -1.273 2 D_DC3:DG10_E D 3 ? E 10 ? 19 1 1 D DT 4 1_555 E DA 8 1_555 -0.114 -0.228 0.044 -5.913 -9.378 4.784 3 D_DT4:DA9_E D 4 ? E 9 ? 20 1 1 D DG 5 1_555 E DC 7 1_555 -0.239 -0.171 -0.311 0.669 -4.429 -0.267 4 D_DG5:DC8_E D 5 ? E 8 ? 19 1 1 D DA 6 1_555 E DT 6 1_555 0.034 -0.147 0.098 -5.787 -10.416 4.205 5 D_DA6:DT7_E D 6 ? E 7 ? 20 1 1 D DT 7 1_555 E DA 5 1_555 -0.075 -0.139 0.128 -8.138 -12.415 1.300 6 D_DT7:DA6_E D 7 ? E 6 ? 20 1 1 D DT 8 1_555 E DA 4 1_555 -0.180 -0.135 0.324 -10.129 -10.962 -2.735 7 D_DT8:DA5_E D 8 ? E 5 ? 20 1 1 D DC 9 1_555 E DG 3 1_555 0.284 -0.127 -0.057 -0.526 5.683 -0.700 8 D_DC9:DG4_E D 9 ? E 4 ? 19 1 1 D DG 10 1_555 E DC 2 1_555 -0.238 -0.120 0.362 12.785 -12.201 -1.169 9 D_DG10:DC3_E D 10 ? E 3 ? 19 1 1 D DC 11 1_555 E DG 1 1_555 0.272 -0.130 0.067 -0.026 -13.520 0.470 10 D_DC11:DG2_E D 11 ? E 2 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 D DC 2 1_555 E DG 10 1_555 D DC 3 1_555 E DG 9 1_555 1.142 -2.001 3.409 2.071 6.499 33.894 -4.369 -1.603 3.047 11.009 -3.507 34.554 1 DD_DC2DC3:DG10DG11_EE D 2 ? E 11 ? D 3 ? E 10 ? 1 D DC 3 1_555 E DG 9 1_555 D DT 4 1_555 E DA 8 1_555 -0.848 -1.455 3.400 2.013 5.277 26.527 -4.420 2.311 2.988 11.337 -4.324 27.111 2 DD_DC3DT4:DA9DG10_EE D 3 ? E 10 ? D 4 ? E 9 ? 1 D DT 4 1_555 E DA 8 1_555 D DG 5 1_555 E DC 7 1_555 -0.515 -0.585 3.182 2.680 14.226 26.445 -3.824 1.501 2.487 28.540 -5.375 30.086 3 DD_DT4DG5:DC8DA9_EE D 4 ? E 9 ? D 5 ? E 8 ? 1 D DG 5 1_555 E DC 7 1_555 D DA 6 1_555 E DT 6 1_555 -0.136 -0.877 3.382 -4.282 3.207 41.045 -1.593 -0.278 3.305 4.550 6.076 41.377 4 DD_DG5DA6:DT7DC8_EE D 5 ? E 8 ? D 6 ? E 7 ? 1 D DA 6 1_555 E DT 6 1_555 D DT 7 1_555 E DA 5 1_555 -0.844 -0.639 3.317 -0.022 -1.647 28.837 -0.907 1.686 3.348 -3.304 0.045 28.883 5 DD_DA6DT7:DA6DT7_EE D 6 ? E 7 ? D 7 ? E 6 ? 1 D DT 7 1_555 E DA 5 1_555 D DT 8 1_555 E DA 4 1_555 -0.889 0.401 3.599 0.741 5.293 32.961 -0.274 1.683 3.597 9.253 -1.296 33.380 6 DD_DT7DT8:DA5DA6_EE D 7 ? E 6 ? D 8 ? E 5 ? 1 D DT 8 1_555 E DA 4 1_555 D DC 9 1_555 E DG 3 1_555 1.499 1.648 3.297 3.729 0.864 37.711 2.423 -1.814 3.460 1.333 -5.751 37.898 7 DD_DT8DC9:DG4DA5_EE D 8 ? E 5 ? D 9 ? E 4 ? 1 D DC 9 1_555 E DG 3 1_555 D DG 10 1_555 E DC 2 1_555 -0.862 1.271 3.169 -5.589 0.109 33.776 2.143 0.592 3.270 0.186 9.539 34.222 8 DD_DC9DG10:DC3DG4_EE D 9 ? E 4 ? D 10 ? E 3 ? 1 D DG 10 1_555 E DC 2 1_555 D DC 11 1_555 E DG 1 1_555 0.397 -0.702 3.594 2.174 -0.037 35.043 -1.157 -0.300 3.612 -0.061 -3.607 35.108 9 DD_DG10DC11:DG2DC3_EE D 10 ? E 3 ? D 11 ? E 2 ? # _pdbx_audit_support.funding_organization 'National Natural Science Foundation of China' _pdbx_audit_support.country China _pdbx_audit_support.grant_number 31670067 _pdbx_audit_support.ordinal 1 # _pdbx_initial_refinement_model.accession_code 5YIU _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.details ? # _atom_sites.entry_id 5Z7I _atom_sites.fract_transf_matrix[1][1] 0.020036 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015409 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007907 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P # loop_