HEADER SIGNALING PROTEIN 29-JAN-18 5Z7L TITLE CRYSTAL STRUCTURE OF NDP52 SKICH REGION IN COMPLEX WITH NAP1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CALCIUM-BINDING AND COILED-COIL DOMAIN-CONTAINING PROTEIN COMPND 3 2; COMPND 4 CHAIN: A, B; COMPND 5 FRAGMENT: UNP RESIDUES 10-126; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: 5-AZACYTIDINE-INDUCED PROTEIN 2; COMPND 9 CHAIN: C, D; COMPND 10 FRAGMENT: UNP RESIDUES 33-75; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CALCOCO2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI-PICHIA PASTORIS SHUTTLE VECTOR SOURCE 7 PPPARG4; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 1182032; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 GENE: AZI2; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI-PICHIA PASTORIS SHUTTLE VECTOR SOURCE 15 PPPARG4; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 1182032 KEYWDS NDP52, NAP1, SKICH, AUTOPHAGY, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR T.FU,L.F.PAN REVDAT 2 27-MAR-24 5Z7L 1 REMARK REVDAT 1 02-JAN-19 5Z7L 0 JRNL AUTH T.FU,J.LIU,Y.WANG,X.XIE,S.HU,L.PAN JRNL TITL MECHANISTIC INSIGHTS INTO THE INTERACTIONS OF NAP1 WITH THE JRNL TITL 2 SKICH DOMAINS OF NDP52 AND TAX1BP1 JRNL REF PROC. NATL. ACAD. SCI. V. 115 11651 2018 JRNL REF 2 U.S.A. JRNL REFN ESSN 1091-6490 JRNL PMID 30459273 JRNL DOI 10.1073/PNAS.1811421115 REMARK 2 REMARK 2 RESOLUTION. 2.02 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.14_3260: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.02 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.65 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 23688 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.850 REMARK 3 FREE R VALUE TEST SET COUNT : 1150 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.6530 - 4.0389 0.96 2861 126 0.1594 0.1974 REMARK 3 2 4.0389 - 3.2062 0.97 2807 143 0.1417 0.1868 REMARK 3 3 3.2062 - 2.8011 0.98 2835 135 0.1524 0.2129 REMARK 3 4 2.8011 - 2.5450 0.99 2820 148 0.1731 0.2365 REMARK 3 5 2.5450 - 2.3626 0.99 2837 130 0.1851 0.2324 REMARK 3 6 2.3626 - 2.2233 0.99 2809 160 0.1979 0.2461 REMARK 3 7 2.2233 - 2.1120 0.98 2773 157 0.2247 0.2767 REMARK 3 8 2.1120 - 2.0200 0.98 2796 151 0.2639 0.3304 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.810 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2680 REMARK 3 ANGLE : 0.852 3613 REMARK 3 CHIRALITY : 0.054 371 REMARK 3 PLANARITY : 0.005 456 REMARK 3 DIHEDRAL : 8.664 1669 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 18 THROUGH 44 ) REMARK 3 ORIGIN FOR THE GROUP (A): 206.7373 -23.8440 92.6725 REMARK 3 T TENSOR REMARK 3 T11: 0.1635 T22: 0.2366 REMARK 3 T33: 0.2839 T12: 0.0308 REMARK 3 T13: -0.0032 T23: -0.0166 REMARK 3 L TENSOR REMARK 3 L11: 4.9641 L22: 6.2351 REMARK 3 L33: 3.8371 L12: -0.0457 REMARK 3 L13: -1.3901 L23: -1.3510 REMARK 3 S TENSOR REMARK 3 S11: -0.1760 S12: -0.0853 S13: -0.3061 REMARK 3 S21: -0.1850 S22: -0.1253 S23: 0.1456 REMARK 3 S31: 0.2328 S32: -0.1712 S33: 0.2590 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 45 THROUGH 65 ) REMARK 3 ORIGIN FOR THE GROUP (A): 205.0814 -24.5123 82.2136 REMARK 3 T TENSOR REMARK 3 T11: 0.1597 T22: 0.3041 REMARK 3 T33: 0.2600 T12: -0.0262 REMARK 3 T13: -0.0211 T23: -0.0785 REMARK 3 L TENSOR REMARK 3 L11: 4.8316 L22: 6.3243 REMARK 3 L33: 5.5258 L12: -0.6841 REMARK 3 L13: -0.2509 L23: 0.4464 REMARK 3 S TENSOR REMARK 3 S11: -0.0082 S12: 0.4946 S13: -0.5066 REMARK 3 S21: -0.2764 S22: 0.0756 S23: -0.3487 REMARK 3 S31: 0.4092 S32: -0.1791 S33: -0.0322 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 66 THROUGH 83 ) REMARK 3 ORIGIN FOR THE GROUP (A): 212.0026 -25.2375 83.0449 REMARK 3 T TENSOR REMARK 3 T11: 0.2118 T22: 0.2112 REMARK 3 T33: 0.2565 T12: -0.0277 REMARK 3 T13: -0.0285 T23: -0.0618 REMARK 3 L TENSOR REMARK 3 L11: 4.8549 L22: 4.7254 REMARK 3 L33: 5.1131 L12: -1.1119 REMARK 3 L13: -0.5822 L23: 0.2280 REMARK 3 S TENSOR REMARK 3 S11: 0.3218 S12: 0.1428 S13: -0.4352 REMARK 3 S21: -0.4582 S22: -0.3847 S23: 0.2327 REMARK 3 S31: 0.4237 S32: -0.1273 S33: -0.1045 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 84 THROUGH 126 ) REMARK 3 ORIGIN FOR THE GROUP (A): 208.1857 -19.7611 89.0930 REMARK 3 T TENSOR REMARK 3 T11: 0.1499 T22: 0.1713 REMARK 3 T33: 0.2639 T12: -0.0021 REMARK 3 T13: -0.0024 T23: -0.0522 REMARK 3 L TENSOR REMARK 3 L11: 4.6679 L22: 1.7924 REMARK 3 L33: 3.0589 L12: -0.2811 REMARK 3 L13: -0.6307 L23: -0.7044 REMARK 3 S TENSOR REMARK 3 S11: 0.0764 S12: -0.0372 S13: -0.0588 REMARK 3 S21: 0.0363 S22: -0.1593 S23: 0.0177 REMARK 3 S31: 0.0966 S32: -0.0043 S33: 0.0531 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 17 THROUGH 44 ) REMARK 3 ORIGIN FOR THE GROUP (A): 176.7507 -4.0249 91.2166 REMARK 3 T TENSOR REMARK 3 T11: 0.1440 T22: 0.1323 REMARK 3 T33: 0.1263 T12: 0.0336 REMARK 3 T13: -0.0133 T23: -0.0369 REMARK 3 L TENSOR REMARK 3 L11: 1.6928 L22: 4.2691 REMARK 3 L33: 5.0505 L12: 0.1220 REMARK 3 L13: 0.4718 L23: -1.8920 REMARK 3 S TENSOR REMARK 3 S11: -0.0007 S12: -0.1544 S13: 0.1455 REMARK 3 S21: 0.1997 S22: 0.0658 S23: -0.0502 REMARK 3 S31: -0.1375 S32: 0.1070 S33: -0.0448 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 45 THROUGH 54 ) REMARK 3 ORIGIN FOR THE GROUP (A): 171.9705 -1.1112 76.6839 REMARK 3 T TENSOR REMARK 3 T11: 0.2090 T22: 0.1641 REMARK 3 T33: 0.1598 T12: 0.0654 REMARK 3 T13: -0.0080 T23: 0.0535 REMARK 3 L TENSOR REMARK 3 L11: 4.9018 L22: 4.9406 REMARK 3 L33: 5.9521 L12: 1.3336 REMARK 3 L13: -1.3796 L23: -0.4910 REMARK 3 S TENSOR REMARK 3 S11: -0.0427 S12: 0.1192 S13: 0.5250 REMARK 3 S21: -0.3604 S22: 0.0921 S23: 0.6698 REMARK 3 S31: -0.4960 S32: -0.1486 S33: -0.0746 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 55 THROUGH 65 ) REMARK 3 ORIGIN FOR THE GROUP (A): 178.6081 -15.7695 86.5969 REMARK 3 T TENSOR REMARK 3 T11: 0.1430 T22: 0.1302 REMARK 3 T33: 0.2001 T12: -0.0169 REMARK 3 T13: 0.0229 T23: 0.0326 REMARK 3 L TENSOR REMARK 3 L11: 2.2340 L22: 3.0642 REMARK 3 L33: 8.3252 L12: -1.4996 REMARK 3 L13: 1.6810 L23: 1.7785 REMARK 3 S TENSOR REMARK 3 S11: -0.0753 S12: -0.0611 S13: -0.3056 REMARK 3 S21: -0.0772 S22: 0.2283 S23: 0.0202 REMARK 3 S31: 0.2455 S32: 0.3105 S33: -0.1161 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 66 THROUGH 74 ) REMARK 3 ORIGIN FOR THE GROUP (A): 171.6035 -16.4814 85.6524 REMARK 3 T TENSOR REMARK 3 T11: 0.1610 T22: 0.1649 REMARK 3 T33: 0.1511 T12: -0.0218 REMARK 3 T13: -0.0471 T23: -0.0055 REMARK 3 L TENSOR REMARK 3 L11: 5.5560 L22: 6.4492 REMARK 3 L33: 4.6922 L12: -2.1221 REMARK 3 L13: 2.8387 L23: -4.2170 REMARK 3 S TENSOR REMARK 3 S11: 0.0412 S12: 0.2335 S13: -0.2597 REMARK 3 S21: -0.1312 S22: -0.0681 S23: 0.2459 REMARK 3 S31: 0.2800 S32: -0.0189 S33: 0.0896 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 75 THROUGH 87 ) REMARK 3 ORIGIN FOR THE GROUP (A): 167.8010 5.4450 80.1511 REMARK 3 T TENSOR REMARK 3 T11: 0.3085 T22: 0.2592 REMARK 3 T33: 0.2504 T12: -0.0283 REMARK 3 T13: 0.0285 T23: 0.0120 REMARK 3 L TENSOR REMARK 3 L11: 7.2322 L22: 3.0591 REMARK 3 L33: 5.4357 L12: -2.8398 REMARK 3 L13: 2.8890 L23: 1.7230 REMARK 3 S TENSOR REMARK 3 S11: -0.3586 S12: 0.1965 S13: 0.6831 REMARK 3 S21: -0.6878 S22: 0.1062 S23: -0.3310 REMARK 3 S31: -0.5888 S32: 0.3763 S33: 0.2237 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 88 THROUGH 126 ) REMARK 3 ORIGIN FOR THE GROUP (A): 174.8551 -10.8697 91.3113 REMARK 3 T TENSOR REMARK 3 T11: 0.1323 T22: 0.1383 REMARK 3 T33: 0.1253 T12: 0.0246 REMARK 3 T13: 0.0150 T23: -0.0175 REMARK 3 L TENSOR REMARK 3 L11: 2.9173 L22: 3.2463 REMARK 3 L33: 3.0860 L12: -0.4281 REMARK 3 L13: 0.9241 L23: -1.1349 REMARK 3 S TENSOR REMARK 3 S11: -0.0751 S12: -0.1650 S13: -0.1977 REMARK 3 S21: 0.1715 S22: 0.0786 S23: 0.0335 REMARK 3 S31: 0.0571 S32: 0.0153 S33: 0.0271 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 33 THROUGH 75 ) REMARK 3 ORIGIN FOR THE GROUP (A): 191.6983 -14.2994 107.3096 REMARK 3 T TENSOR REMARK 3 T11: 0.2075 T22: 0.2118 REMARK 3 T33: 0.2296 T12: 0.0030 REMARK 3 T13: 0.0079 T23: -0.0176 REMARK 3 L TENSOR REMARK 3 L11: 1.2040 L22: 0.8114 REMARK 3 L33: 3.1767 L12: 0.1017 REMARK 3 L13: 0.4341 L23: 1.5363 REMARK 3 S TENSOR REMARK 3 S11: 0.0690 S12: 0.1726 S13: -0.1103 REMARK 3 S21: 0.1262 S22: -0.1271 S23: 0.0123 REMARK 3 S31: 0.2791 S32: -0.7791 S33: 0.1177 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 33 THROUGH 75 ) REMARK 3 ORIGIN FOR THE GROUP (A): 194.4992 -7.2547 105.8401 REMARK 3 T TENSOR REMARK 3 T11: 0.2053 T22: 0.1858 REMARK 3 T33: 0.2402 T12: 0.0183 REMARK 3 T13: -0.0136 T23: -0.0232 REMARK 3 L TENSOR REMARK 3 L11: 1.5320 L22: 0.6275 REMARK 3 L33: 8.3603 L12: 0.7104 REMARK 3 L13: 2.4338 L23: 1.5991 REMARK 3 S TENSOR REMARK 3 S11: -0.0051 S12: 0.1733 S13: -0.0372 REMARK 3 S21: -0.0574 S22: 0.1892 S23: -0.0353 REMARK 3 S31: -0.3775 S32: 0.2951 S33: -0.2125 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5Z7L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 31-JAN-18. REMARK 100 THE DEPOSITION ID IS D_1300006624. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-JAN-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97914 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : AGILENT EOS CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24065 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.020 REMARK 200 RESOLUTION RANGE LOW (A) : 72.050 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.02 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG3350,SODIUM MALONATE, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 56.81950 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 22.51300 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 56.81950 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 22.51300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6280 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16900 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -39.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 10 REMARK 465 SER A 11 REMARK 465 ALA A 12 REMARK 465 VAL A 13 REMARK 465 LEU A 14 REMARK 465 LEU A 15 REMARK 465 ASP A 16 REMARK 465 HIS A 17 REMARK 465 THR B 10 REMARK 465 SER B 11 REMARK 465 ALA B 12 REMARK 465 VAL B 13 REMARK 465 LEU B 14 REMARK 465 LEU B 15 REMARK 465 ASP B 16 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 52 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 84 CG CD CE NZ REMARK 470 HIS B 17 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 318 O HOH B 385 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU C 73 CA - CB - CG ANGL. DEV. = 14.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 80 117.70 -161.71 REMARK 500 ALA A 86 32.90 -149.26 REMARK 500 ASP A 101 -168.13 -105.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 203 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5Z7G RELATED DB: PDB REMARK 900 RELATED ID: 5Z7A RELATED DB: PDB DBREF 5Z7L A 10 126 UNP Q13137 CACO2_HUMAN 10 126 DBREF 5Z7L B 10 126 UNP Q13137 CACO2_HUMAN 10 126 DBREF 5Z7L C 33 75 UNP Q9H6S1 AZI2_HUMAN 33 75 DBREF 5Z7L D 33 75 UNP Q9H6S1 AZI2_HUMAN 33 75 SEQRES 1 A 117 THR SER ALA VAL LEU LEU ASP HIS CYS HIS PHE SER GLN SEQRES 2 A 117 VAL ILE PHE ASN SER VAL GLU LYS PHE TYR ILE PRO GLY SEQRES 3 A 117 GLY ASP VAL THR CYS HIS TYR THR PHE THR GLN HIS PHE SEQRES 4 A 117 ILE PRO ARG ARG LYS ASP TRP ILE GLY ILE PHE ARG VAL SEQRES 5 A 117 GLY TRP LYS THR THR ARG GLU TYR TYR THR PHE MET TRP SEQRES 6 A 117 VAL THR LEU PRO ILE ASP LEU ASN ASN LYS SER ALA LYS SEQRES 7 A 117 GLN GLN GLU VAL GLN PHE LYS ALA TYR TYR LEU PRO LYS SEQRES 8 A 117 ASP ASP GLU TYR TYR GLN PHE CYS TYR VAL ASP GLU ASP SEQRES 9 A 117 GLY VAL VAL ARG GLY ALA SER ILE PRO PHE GLN PHE ARG SEQRES 1 B 117 THR SER ALA VAL LEU LEU ASP HIS CYS HIS PHE SER GLN SEQRES 2 B 117 VAL ILE PHE ASN SER VAL GLU LYS PHE TYR ILE PRO GLY SEQRES 3 B 117 GLY ASP VAL THR CYS HIS TYR THR PHE THR GLN HIS PHE SEQRES 4 B 117 ILE PRO ARG ARG LYS ASP TRP ILE GLY ILE PHE ARG VAL SEQRES 5 B 117 GLY TRP LYS THR THR ARG GLU TYR TYR THR PHE MET TRP SEQRES 6 B 117 VAL THR LEU PRO ILE ASP LEU ASN ASN LYS SER ALA LYS SEQRES 7 B 117 GLN GLN GLU VAL GLN PHE LYS ALA TYR TYR LEU PRO LYS SEQRES 8 B 117 ASP ASP GLU TYR TYR GLN PHE CYS TYR VAL ASP GLU ASP SEQRES 9 B 117 GLY VAL VAL ARG GLY ALA SER ILE PRO PHE GLN PHE ARG SEQRES 1 C 43 GLU SER VAL ALA SER HIS PHE ALA LEU VAL THR ALA TYR SEQRES 2 C 43 GLU ASP ILE LYS LYS ARG LEU LYS ASP SER GLU LYS GLU SEQRES 3 C 43 ASN SER LEU LEU LYS LYS ARG ILE ARG PHE LEU GLU GLU SEQRES 4 C 43 LYS LEU ILE ALA SEQRES 1 D 43 GLU SER VAL ALA SER HIS PHE ALA LEU VAL THR ALA TYR SEQRES 2 D 43 GLU ASP ILE LYS LYS ARG LEU LYS ASP SER GLU LYS GLU SEQRES 3 D 43 ASN SER LEU LEU LYS LYS ARG ILE ARG PHE LEU GLU GLU SEQRES 4 D 43 LYS LEU ILE ALA HET GOL A 201 6 HET GOL B 201 6 HET GOL B 202 6 HET GOL B 203 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 GOL 4(C3 H8 O3) FORMUL 9 HOH *272(H2 O) HELIX 1 AA1 CYS A 18 SER A 21 5 4 HELIX 2 AA2 THR A 65 TYR A 69 5 5 HELIX 3 AA3 ASN A 83 LYS A 87 5 5 HELIX 4 AA4 LYS A 94 LEU A 98 5 5 HELIX 5 AA5 HIS B 17 SER B 21 5 5 HELIX 6 AA6 THR B 65 TYR B 69 5 5 HELIX 7 AA7 LYS B 94 LEU B 98 5 5 HELIX 8 AA8 SER C 34 LEU C 73 1 40 HELIX 9 AA9 VAL D 35 ILE D 74 1 40 SHEET 1 AA1 3 VAL A 23 ASN A 26 0 SHEET 2 AA1 3 VAL A 38 PHE A 44 -1 O THR A 43 N ILE A 24 SHEET 3 AA1 3 GLN A 89 PHE A 93 -1 O VAL A 91 N CYS A 40 SHEET 1 AA2 4 THR A 71 TRP A 74 0 SHEET 2 AA2 4 TRP A 55 ARG A 60 -1 N ILE A 56 O MET A 73 SHEET 3 AA2 4 TYR A 105 VAL A 110 -1 O CYS A 108 N GLY A 57 SHEET 4 AA2 4 VAL A 116 ALA A 119 -1 O ARG A 117 N TYR A 109 SHEET 1 AA3 3 VAL B 23 ASN B 26 0 SHEET 2 AA3 3 VAL B 38 PHE B 44 -1 O THR B 43 N ILE B 24 SHEET 3 AA3 3 GLN B 88 PHE B 93 -1 O PHE B 93 N VAL B 38 SHEET 1 AA4 2 PHE B 31 TYR B 32 0 SHEET 2 AA4 2 GLN B 124 PHE B 125 1 O GLN B 124 N TYR B 32 SHEET 1 AA5 4 THR B 71 TRP B 74 0 SHEET 2 AA5 4 TRP B 55 ARG B 60 -1 N ILE B 56 O MET B 73 SHEET 3 AA5 4 TYR B 105 VAL B 110 -1 O VAL B 110 N TRP B 55 SHEET 4 AA5 4 VAL B 116 ALA B 119 -1 O ARG B 117 N TYR B 109 SITE 1 AC1 5 SER A 27 GLU A 29 THR A 39 HIS A 41 SITE 2 AC1 5 HOH A 304 SITE 1 AC2 3 ILE B 24 THR B 43 HOH B 323 SITE 1 AC3 2 GLU B 112 HOH B 327 SITE 1 AC4 2 ASN A 83 TYR B 96 CRYST1 113.639 45.026 86.679 90.00 123.77 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008800 0.000000 0.005885 0.00000 SCALE2 0.000000 0.022209 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013879 0.00000