HEADER CHAPERONE 31-JAN-18 5Z8I TITLE SOLUTION STRUCTURE OF THE SBDBETA DOMAIN OF YEAST SSA1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEAT SHOCK PROTEIN SSA1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HEAT SHOCK PROTEIN YG100; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE (STRAIN ATCC 204508 / SOURCE 3 S288C); SOURCE 4 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 5 ORGANISM_TAXID: 559292; SOURCE 6 STRAIN: ATCC 204508 / S288C; SOURCE 7 GENE: SSA1, YAL005C; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HSP70, SBDBETA, CHAPERONE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR W.GONG,W.HU,H.WU,S.PERRETT REVDAT 5 15-MAY-24 5Z8I 1 REMARK REVDAT 4 14-JUN-23 5Z8I 1 REMARK REVDAT 3 28-NOV-18 5Z8I 1 COMPND JRNL REVDAT 2 10-OCT-18 5Z8I 1 COMPND JRNL REVDAT 1 26-SEP-18 5Z8I 0 JRNL AUTH W.GONG,W.HU,L.XU,H.WU,S.WU,H.ZHANG,J.WANG,G.W.JONES, JRNL AUTH 2 S.PERRETT JRNL TITL THE C-TERMINAL GGAP MOTIF OF HSP70 MEDIATES SUBSTRATE JRNL TITL 2 RECOGNITION AND STRESS RESPONSE IN YEAST. JRNL REF J. BIOL. CHEM. V. 293 17663 2018 JRNL REFN ESSN 1083-351X JRNL PMID 30228181 JRNL DOI 10.1074/JBC.RA118.002691 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE, NMRVIEW, CNS REMARK 3 AUTHORS : DELAGLIO, GRZESIEK, VUISTER, ZHU, PFEIFER AND BAX REMARK 3 (NMRPIPE), JOHNSON, ONE MOON SCIENTIFIC (NMRVIEW), REMARK 3 BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5Z8I COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 02-FEB-18. REMARK 100 THE DEPOSITION ID IS D_1300006619. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 90 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 1 MM [U-13C; U-15N] SSA1, 90% REMARK 210 H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D CBCA(CO)NH; 3D HNCACB; 3D REMARK 210 HNCO; 3D HN(CA)CO; 3D C(CO)NH; REMARK 210 3D HBHA(CO)NH; 3D CCH-TOCSY; 3D REMARK 210 HCCH-TOCSY; 3D 15N-EDITED NOESY; REMARK 210 3D 13C-EDITED NOESY; 3D 13C- REMARK 210 EDITED AROMATIC NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : DD2 REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ1 LYS A 65 OE2 GLU A 148 1.57 REMARK 500 HZ3 LYS A 128 OE1 GLU A 132 1.58 REMARK 500 HG SER A 127 OD1 ASP A 130 1.59 REMARK 500 H1 SER A 1 OD2 ASP A 122 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 3 -35.03 -141.97 REMARK 500 1 LEU A 9 78.69 65.95 REMARK 500 1 ALA A 22 107.68 -43.88 REMARK 500 1 ASN A 33 -2.38 80.74 REMARK 500 1 ALA A 48 133.50 -175.77 REMARK 500 1 ASN A 121 40.44 -75.69 REMARK 500 1 LYS A 123 178.64 158.06 REMARK 500 1 PHE A 141 45.91 -98.93 REMARK 500 1 ALA A 153 -37.89 68.92 REMARK 500 1 SER A 164 19.60 52.40 REMARK 500 1 LYS A 166 -52.61 -121.14 REMARK 500 1 GLU A 171 -88.32 51.99 REMARK 500 2 LYS A 3 -178.04 67.72 REMARK 500 2 ASP A 6 -164.42 63.31 REMARK 500 2 ALA A 22 99.99 -46.83 REMARK 500 2 LYS A 123 -48.03 70.57 REMARK 500 2 ILE A 152 74.49 -119.45 REMARK 500 2 LYS A 155 -166.00 -108.92 REMARK 500 2 LYS A 166 -42.28 78.28 REMARK 500 2 ASN A 167 109.19 -165.30 REMARK 500 3 GLN A 5 -60.56 71.74 REMARK 500 3 LEU A 9 -63.37 72.04 REMARK 500 3 LEU A 29 -63.05 -109.39 REMARK 500 3 ALA A 48 130.02 93.24 REMARK 500 3 ARG A 85 -48.89 62.48 REMARK 500 3 SER A 154 153.82 65.02 REMARK 500 3 SER A 164 23.86 -64.49 REMARK 500 3 ASN A 167 -95.13 -110.84 REMARK 500 4 ASP A 11 -14.84 74.41 REMARK 500 4 ALA A 22 107.62 -44.35 REMARK 500 4 ARG A 125 -61.96 55.35 REMARK 500 4 GLU A 171 76.82 62.66 REMARK 500 5 LYS A 3 -92.57 -176.38 REMARK 500 5 ALA A 22 106.64 -43.34 REMARK 500 5 THR A 35 106.71 71.18 REMARK 500 5 ALA A 48 122.02 -177.47 REMARK 500 5 ARG A 85 -64.16 57.02 REMARK 500 5 LYS A 123 -69.45 74.52 REMARK 500 5 ARG A 125 -89.45 -110.56 REMARK 500 5 PHE A 141 34.55 -93.58 REMARK 500 5 SER A 164 -87.22 43.42 REMARK 500 5 LYS A 166 30.58 71.54 REMARK 500 5 ALA A 172 -43.25 -155.64 REMARK 500 6 LYS A 3 30.40 -87.37 REMARK 500 6 THR A 4 -96.49 53.13 REMARK 500 6 GLN A 5 92.28 177.94 REMARK 500 6 LEU A 7 -82.51 -113.33 REMARK 500 6 ALA A 22 105.26 -52.40 REMARK 500 6 ALA A 48 164.53 177.38 REMARK 500 6 ASN A 121 34.50 -90.23 REMARK 500 REMARK 500 THIS ENTRY HAS 223 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 63 0.09 SIDE CHAIN REMARK 500 2 ARG A 63 0.07 SIDE CHAIN REMARK 500 4 ARG A 32 0.09 SIDE CHAIN REMARK 500 7 ARG A 32 0.08 SIDE CHAIN REMARK 500 7 ARG A 63 0.08 SIDE CHAIN REMARK 500 11 ARG A 32 0.09 SIDE CHAIN REMARK 500 14 ARG A 32 0.09 SIDE CHAIN REMARK 500 14 ARG A 63 0.10 SIDE CHAIN REMARK 500 15 ARG A 32 0.09 SIDE CHAIN REMARK 500 19 ARG A 32 0.10 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 36161 RELATED DB: BMRB REMARK 900 SOLUTION STRUCTURE OF THE SBDBETA DOMAIN OF YEAST SSA1 DBREF 5Z8I A 1 173 UNP P10591 HSP71_YEAST 382 554 SEQRES 1 A 173 SER SER LYS THR GLN ASP LEU LEU LEU LEU ASP VAL ALA SEQRES 2 A 173 PRO LEU SER LEU GLY ILE GLU THR ALA GLY GLY VAL MET SEQRES 3 A 173 THR LYS LEU ILE PRO ARG ASN SER THR ILE PRO THR LYS SEQRES 4 A 173 LYS SER GLU ILE PHE SER THR TYR ALA ASP ASN GLN PRO SEQRES 5 A 173 GLY VAL LEU ILE GLN VAL PHE GLU GLY GLU ARG ALA LYS SEQRES 6 A 173 THR LYS ASP ASN ASN LEU LEU GLY LYS PHE GLU LEU SER SEQRES 7 A 173 GLY ILE PRO PRO ALA PRO ARG GLY VAL PRO GLN ILE GLU SEQRES 8 A 173 VAL THR PHE ASP VAL ASP SER ASN GLY ILE LEU ASN VAL SEQRES 9 A 173 SER ALA VAL GLU LYS GLY THR GLY LYS SER ASN LYS ILE SEQRES 10 A 173 THR ILE THR ASN ASP LYS GLY ARG LEU SER LYS GLU ASP SEQRES 11 A 173 ILE GLU LYS MET VAL ALA GLU ALA GLU LYS PHE LYS GLU SEQRES 12 A 173 GLU ASP GLU LYS GLU SER GLN ARG ILE ALA SER LYS ASN SEQRES 13 A 173 GLN LEU GLU SER ILE ALA TYR SER LEU LYS ASN THR ILE SEQRES 14 A 173 SER GLU ALA GLY HELIX 1 AA1 LYS A 65 ASN A 69 5 5 HELIX 2 AA2 SER A 127 PHE A 141 1 15 HELIX 3 AA3 PHE A 141 ALA A 153 1 13 SHEET 1 AA1 4 VAL A 25 ILE A 30 0 SHEET 2 AA1 4 LEU A 17 THR A 21 -1 N ILE A 19 O THR A 27 SHEET 3 AA1 4 GLY A 53 GLU A 60 -1 O PHE A 59 N GLY A 18 SHEET 4 AA1 4 ASN A 70 SER A 78 -1 O LEU A 77 N VAL A 54 SHEET 1 AA2 5 SER A 114 THR A 120 0 SHEET 2 AA2 5 ILE A 101 GLU A 108 -1 N ALA A 106 O ASN A 115 SHEET 3 AA2 5 ILE A 90 VAL A 96 -1 N THR A 93 O SER A 105 SHEET 4 AA2 5 THR A 38 THR A 46 -1 N PHE A 44 O ILE A 90 SHEET 5 AA2 5 GLN A 157 LEU A 158 1 O LEU A 158 N SER A 45 CISPEP 1 ILE A 36 PRO A 37 1 4.02 CISPEP 2 ILE A 36 PRO A 37 2 0.16 CISPEP 3 ILE A 36 PRO A 37 3 5.58 CISPEP 4 ILE A 36 PRO A 37 4 5.16 CISPEP 5 ILE A 36 PRO A 37 5 2.29 CISPEP 6 ILE A 36 PRO A 37 6 2.49 CISPEP 7 ILE A 36 PRO A 37 7 -0.31 CISPEP 8 ILE A 36 PRO A 37 8 1.71 CISPEP 9 ILE A 36 PRO A 37 9 1.72 CISPEP 10 ILE A 36 PRO A 37 10 0.90 CISPEP 11 ILE A 36 PRO A 37 11 3.29 CISPEP 12 ILE A 36 PRO A 37 12 1.00 CISPEP 13 ILE A 36 PRO A 37 13 4.45 CISPEP 14 ILE A 36 PRO A 37 14 1.04 CISPEP 15 ILE A 36 PRO A 37 15 0.46 CISPEP 16 ILE A 36 PRO A 37 16 1.84 CISPEP 17 ILE A 36 PRO A 37 17 0.79 CISPEP 18 ILE A 36 PRO A 37 18 -0.44 CISPEP 19 ILE A 36 PRO A 37 19 -0.63 CISPEP 20 ILE A 36 PRO A 37 20 1.19 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1