HEADER GENE REGULATION 31-JAN-18 5Z8L TITLE CRYSTAL STRUCTURE OF ARABIDOPSIS THALIANA EBS IN COMPLEX WITH AN TITLE 2 H3K27ME3 PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHROMATIN REMODELING PROTEIN EBS; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PROTEIN EARLY BOLTING IN SHORT DAYS; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: H3K27ME3 PEPTIDE; COMPND 9 CHAIN: P; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: MOUSE-EAR CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: EBS, AT4G22140, F1N20.240; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VARIANT: RIL; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PSUMO; SOURCE 12 MOL_ID: 2; SOURCE 13 SYNTHETIC: YES; SOURCE 14 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 15 ORGANISM_COMMON: MOUSE-EAR CRESS; SOURCE 16 ORGANISM_TAXID: 3702 KEYWDS EBS, BAH, PHD, H3K27ME3, HISTONE READER, GENE REGULATION EXPDTA X-RAY DIFFRACTION AUTHOR Z.YANG,J.DU REVDAT 2 19-SEP-18 5Z8L 1 JRNL REVDAT 1 25-JUL-18 5Z8L 0 JRNL AUTH Z.YANG,S.QIAN,R.N.SCHEID,L.LU,X.CHEN,R.LIU,X.DU,X.LV, JRNL AUTH 2 M.D.BOERSMA,M.SCALF,L.M.SMITH,J.M.DENU,J.DU,X.ZHONG JRNL TITL EBS IS A BIVALENT HISTONE READER THAT REGULATES FLORAL PHASE JRNL TITL 2 TRANSITION IN ARABIDOPSIS. JRNL REF NAT. GENET. V. 50 1247 2018 JRNL REFN ISSN 1546-1718 JRNL PMID 30082787 JRNL DOI 10.1038/S41588-018-0187-8 REMARK 2 REMARK 2 RESOLUTION. 2.01 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.01 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.02 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.220 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 14932 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.230 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 753 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.0336 - 4.3197 1.00 2676 100 0.1786 0.1934 REMARK 3 2 4.3197 - 3.4290 1.00 2652 138 0.1665 0.1958 REMARK 3 3 3.4290 - 2.9956 1.00 2593 169 0.2079 0.2131 REMARK 3 4 2.9956 - 2.7217 1.00 2647 152 0.2203 0.2860 REMARK 3 5 2.7217 - 2.5267 1.00 2630 150 0.2261 0.2698 REMARK 3 6 2.5267 - 2.3777 1.00 2653 133 0.2269 0.2624 REMARK 3 7 2.3777 - 2.2586 1.00 2627 125 0.2343 0.2806 REMARK 3 8 2.2586 - 2.1603 1.00 2657 155 0.2240 0.2632 REMARK 3 9 2.1603 - 2.0771 1.00 2644 121 0.2546 0.2581 REMARK 3 10 2.0771 - 2.0055 0.96 2487 148 0.2584 0.2659 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.820 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 1710 REMARK 3 ANGLE : 1.203 2303 REMARK 3 CHIRALITY : 0.074 242 REMARK 3 PLANARITY : 0.005 297 REMARK 3 DIHEDRAL : 14.875 642 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 63 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.2956 37.1775 39.2568 REMARK 3 T TENSOR REMARK 3 T11: 0.2635 T22: 0.3245 REMARK 3 T33: 0.2807 T12: -0.0517 REMARK 3 T13: 0.0053 T23: -0.0732 REMARK 3 L TENSOR REMARK 3 L11: 2.6126 L22: 4.2910 REMARK 3 L33: 5.9689 L12: -0.0842 REMARK 3 L13: 0.1551 L23: -0.9635 REMARK 3 S TENSOR REMARK 3 S11: 0.2327 S12: -0.3226 S13: -0.0490 REMARK 3 S21: 0.1652 S22: -0.1181 S23: 0.2883 REMARK 3 S31: 0.1572 S32: -0.5464 S33: -0.1803 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 64 THROUGH 191 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.9698 33.2904 24.2584 REMARK 3 T TENSOR REMARK 3 T11: 0.2113 T22: 0.1408 REMARK 3 T33: 0.1607 T12: 0.0209 REMARK 3 T13: -0.0507 T23: 0.0060 REMARK 3 L TENSOR REMARK 3 L11: 5.6628 L22: 1.4308 REMARK 3 L33: 2.8242 L12: 0.5579 REMARK 3 L13: -2.1564 L23: 0.4986 REMARK 3 S TENSOR REMARK 3 S11: 0.0881 S12: 0.2300 S13: -0.0239 REMARK 3 S21: -0.0367 S22: -0.0647 S23: -0.0333 REMARK 3 S31: 0.0104 S32: -0.1077 S33: -0.0353 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 192 THROUGH 213 ) REMARK 3 ORIGIN FOR THE GROUP (A): 37.7467 38.2784 10.1989 REMARK 3 T TENSOR REMARK 3 T11: 1.1383 T22: 0.6774 REMARK 3 T33: 0.6476 T12: 0.0054 REMARK 3 T13: 0.2153 T23: 0.1050 REMARK 3 L TENSOR REMARK 3 L11: 3.3261 L22: 2.1644 REMARK 3 L33: 4.1302 L12: 0.8820 REMARK 3 L13: 3.2821 L23: 0.8923 REMARK 3 S TENSOR REMARK 3 S11: -0.0470 S12: -0.7791 S13: 0.1519 REMARK 3 S21: -0.9758 S22: 0.6822 S23: 0.2104 REMARK 3 S31: -0.7317 S32: 1.5069 S33: -0.6131 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 214 THROUGH 220 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.8280 33.3650 8.7877 REMARK 3 T TENSOR REMARK 3 T11: 1.1923 T22: 1.2586 REMARK 3 T33: 1.0376 T12: 0.1039 REMARK 3 T13: -0.1373 T23: -0.2555 REMARK 3 L TENSOR REMARK 3 L11: 0.4417 L22: 0.0452 REMARK 3 L33: 0.1075 L12: -0.1302 REMARK 3 L13: 0.2177 L23: -0.0661 REMARK 3 S TENSOR REMARK 3 S11: -0.2720 S12: 0.1441 S13: 0.0354 REMARK 3 S21: -0.0349 S22: -0.1002 S23: 0.1100 REMARK 3 S31: -0.2345 S32: -0.0808 S33: 0.3005 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'P' AND (RESID 23 THROUGH 30 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.2609 23.9282 41.9838 REMARK 3 T TENSOR REMARK 3 T11: 0.8914 T22: 0.5458 REMARK 3 T33: 0.4594 T12: -0.1887 REMARK 3 T13: -0.0258 T23: 0.0797 REMARK 3 L TENSOR REMARK 3 L11: 2.5200 L22: 2.2640 REMARK 3 L33: 6.1233 L12: 0.9443 REMARK 3 L13: 1.6450 L23: 3.7214 REMARK 3 S TENSOR REMARK 3 S11: 0.5711 S12: -0.8158 S13: -0.3203 REMARK 3 S21: 1.6448 S22: -0.8547 S23: -0.0355 REMARK 3 S31: 0.6159 S32: -0.8704 S33: 0.3137 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5Z8L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-FEB-18. REMARK 100 THE DEPOSITION ID IS D_1300006663. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-DEC-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.2827 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14980 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 13.60 REMARK 200 R MERGE (I) : 0.10300 REMARK 200 R SYM (I) : 0.10300 REMARK 200 FOR THE DATA SET : 51.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 13.50 REMARK 200 R MERGE FOR SHELL (I) : 0.79700 REMARK 200 R SYM FOR SHELL (I) : 0.79700 REMARK 200 FOR SHELL : 5.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 35.62 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.91 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M SODIUM ACETATE, 20% PEG 3350, PH REMARK 280 7.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 18.12350 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 49.01900 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.14950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 49.01900 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 18.12350 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 30.14950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12860 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, P REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 61 REMARK 465 ASN A 62 REMARK 465 SER A 195 REMARK 465 SER A 196 REMARK 465 ASP A 197 REMARK 465 ASP A 198 REMARK 465 ASP A 199 REMARK 465 VAL A 200 REMARK 465 ALA A 201 REMARK 465 ALA A 202 REMARK 465 SER A 203 REMARK 465 GLN A 204 REMARK 465 ASN A 205 REMARK 465 GLY A 206 REMARK 465 PHE A 207 REMARK 465 THR A 208 REMARK 465 LEU A 221 REMARK 465 PHE A 222 REMARK 465 SER A 223 REMARK 465 HIS A 224 REMARK 465 LEU A 225 REMARK 465 LEU A 226 REMARK 465 TYR A 227 REMARK 465 ARG A 228 REMARK 465 CYS A 229 REMARK 465 SER A 230 REMARK 465 ILE A 231 REMARK 465 THR A 232 REMARK 465 TYR A 233 REMARK 465 LEU A 234 REMARK 465 LEU P 20 REMARK 465 ALA P 21 REMARK 465 THR P 22 REMARK 465 ALA P 31 REMARK 465 THR P 32 REMARK 465 GLY P 33 REMARK 465 GLY P 34 REMARK 465 VAL P 35 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 59 -161.74 -122.83 REMARK 500 CYS A 149 179.92 78.04 REMARK 500 LYS A 216 -102.79 -157.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 706 DISTANCE = 6.67 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 149 SG REMARK 620 2 CYS A 151 SG 112.3 REMARK 620 3 HIS A 172 ND1 100.3 97.4 REMARK 620 4 CYS A 175 SG 104.2 122.9 117.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 164 SG REMARK 620 2 CYS A 167 SG 94.3 REMARK 620 3 CYS A 191 SG 123.2 101.5 REMARK 620 4 CYS A 194 SG 90.6 80.9 145.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 502 DBREF 5Z8L A 1 234 UNP F4JL28 EBS_ARATH 1 234 DBREF 5Z8L P 20 35 UNP P59226 H32_ARATH 21 36 SEQADV 5Z8L ALA A 201 UNP F4JL28 LYS 201 ENGINEERED MUTATION SEQADV 5Z8L ALA A 202 UNP F4JL28 LYS 202 ENGINEERED MUTATION SEQRES 1 A 234 MET ALA LYS THR ARG PRO GLY VAL ALA SER LYS ILE LYS SEQRES 2 A 234 THR GLY ARG LYS GLU LEU ASP SER TYR THR ILE LYS GLY SEQRES 3 A 234 THR ASN LYS VAL VAL ARG ALA GLY ASP CYS VAL LEU MET SEQRES 4 A 234 ARG PRO SER ASP ALA GLY LYS PRO PRO TYR VAL ALA ARG SEQRES 5 A 234 VAL GLU LYS ILE GLU ALA ASP ALA ARG ASN ASN VAL LYS SEQRES 6 A 234 VAL HIS CYS ARG TRP TYR TYR ARG PRO GLU GLU SER LEU SEQRES 7 A 234 GLY GLY ARG ARG GLN PHE HIS GLY ALA LYS GLU LEU PHE SEQRES 8 A 234 LEU SER ASP HIS PHE ASP VAL GLN SER ALA HIS THR ILE SEQRES 9 A 234 GLU GLY LYS CYS ILE VAL HIS THR PHE LYS ASN TYR THR SEQRES 10 A 234 ARG LEU GLU ASN VAL GLY ALA GLU ASP TYR TYR CYS ARG SEQRES 11 A 234 PHE GLU TYR LYS ALA ALA THR GLY ALA PHE THR PRO ASP SEQRES 12 A 234 ARG VAL ALA VAL TYR CYS LYS CYS GLU MET PRO TYR ASN SEQRES 13 A 234 PRO ASP ASP LEU MET VAL GLN CYS GLU GLY CYS LYS ASP SEQRES 14 A 234 TRP TYR HIS PRO ALA CYS VAL GLY MET THR ILE GLU GLU SEQRES 15 A 234 ALA LYS LYS LEU ASP HIS PHE VAL CYS ALA GLU CYS SER SEQRES 16 A 234 SER ASP ASP ASP VAL ALA ALA SER GLN ASN GLY PHE THR SEQRES 17 A 234 SER SER PRO ALA ASP ASP VAL LYS VAL ARG LEU SER LEU SEQRES 18 A 234 PHE SER HIS LEU LEU TYR ARG CYS SER ILE THR TYR LEU SEQRES 1 P 16 LEU ALA THR LYS ALA ALA ARG M3L SER ALA PRO ALA THR SEQRES 2 P 16 GLY GLY VAL MODRES 5Z8L M3L P 27 LYS MODIFIED RESIDUE HET M3L P 27 12 HET ZN A 501 1 HET ZN A 502 1 HETNAM M3L N-TRIMETHYLLYSINE HETNAM ZN ZINC ION FORMUL 2 M3L C9 H21 N2 O2 1+ FORMUL 3 ZN 2(ZN 2+) FORMUL 5 HOH *108(H2 O) HELIX 1 AA1 ARG A 73 SER A 77 5 5 HELIX 2 AA2 PHE A 113 ARG A 118 1 6 HELIX 3 AA3 HIS A 172 GLY A 177 5 6 HELIX 4 AA4 THR A 179 LEU A 186 1 8 HELIX 5 AA5 SER A 210 ASP A 214 5 5 SHEET 1 AA1 2 TYR A 22 THR A 23 0 SHEET 2 AA1 2 VAL A 30 VAL A 31 -1 O VAL A 31 N TYR A 22 SHEET 1 AA2 8 PHE A 140 THR A 141 0 SHEET 2 AA2 8 ASP A 126 TYR A 133 -1 N GLU A 132 O THR A 141 SHEET 3 AA2 8 ILE A 104 THR A 112 1 N ILE A 109 O TYR A 127 SHEET 4 AA2 8 CYS A 36 MET A 39 -1 N LEU A 38 O GLY A 106 SHEET 5 AA2 8 TYR A 49 ALA A 58 -1 O ALA A 51 N VAL A 37 SHEET 6 AA2 8 VAL A 64 TYR A 72 -1 O LYS A 65 N GLU A 57 SHEET 7 AA2 8 GLU A 89 SER A 100 -1 O ASP A 97 N CYS A 68 SHEET 8 AA2 8 ASP A 126 TYR A 133 1 O TYR A 128 N LEU A 90 SHEET 1 AA3 2 VAL A 145 ALA A 146 0 SHEET 2 AA3 2 ARG A 218 LEU A 219 -1 O LEU A 219 N VAL A 145 SHEET 1 AA4 2 VAL A 162 GLN A 163 0 SHEET 2 AA4 2 TRP A 170 TYR A 171 -1 O TYR A 171 N VAL A 162 LINK SG CYS A 149 ZN ZN A 501 1555 1555 2.39 LINK SG CYS A 151 ZN ZN A 501 1555 1555 2.43 LINK SG CYS A 164 ZN ZN A 502 1555 1555 2.53 LINK SG CYS A 167 ZN ZN A 502 1555 1555 2.24 LINK ND1 HIS A 172 ZN ZN A 501 1555 1555 2.20 LINK SG CYS A 175 ZN ZN A 501 1555 1555 2.37 LINK SG CYS A 191 ZN ZN A 502 1555 1555 2.30 LINK SG CYS A 194 ZN ZN A 502 1555 1555 2.86 LINK C ARG P 26 N M3L P 27 1555 1555 1.31 LINK C M3L P 27 N SER P 28 1555 1555 1.31 CISPEP 1 THR A 141 PRO A 142 0 -2.69 SITE 1 AC1 4 CYS A 149 CYS A 151 HIS A 172 CYS A 175 SITE 1 AC2 4 CYS A 164 CYS A 167 CYS A 191 CYS A 194 CRYST1 36.247 60.299 98.038 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.027588 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016584 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010200 0.00000