HEADER HYDROLASE 02-FEB-18 5Z93 TITLE CRYSTAL STRUCTURE OF SIRT3 IN COMPLEX WITH H3K9BHB PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: NAD-DEPENDENT PROTEIN DEACETYLASE SIRTUIN-3, MITOCHONDRIAL; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 117-399; COMPND 5 SYNONYM: HSIRT3,REGULATORY PROTEIN SIR2 HOMOLOG 3,SIR2-LIKE PROTEIN COMPND 6 3; COMPND 7 EC: 3.5.1.-; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: GENE FOR HISTONE H3 (GERMLINE GENE); COMPND 11 CHAIN: B; COMPND 12 FRAGMENT: UNP RESIDUES 7-16; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SIRT3, SIR2L3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606 KEYWDS ROSSMANN FOLD, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR X.ZHANG,H.LI REVDAT 1 06-FEB-19 5Z93 0 JRNL AUTH X.ZHANG,H.LI JRNL TITL CRYSTAL STRUCTURE OF SIRT3 IN COMPLEX WITH H3K9BHB PEPTIDE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.13_2998: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.21 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 19211 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.166 REMARK 3 R VALUE (WORKING SET) : 0.161 REMARK 3 FREE R VALUE : 0.210 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.120 REMARK 3 FREE R VALUE TEST SET COUNT : 1944 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 31.2177 - 4.6834 0.99 1335 167 0.1563 0.1871 REMARK 3 2 4.6834 - 3.7193 0.99 1243 160 0.1257 0.1633 REMARK 3 3 3.7193 - 3.2497 0.98 1248 140 0.1537 0.1973 REMARK 3 4 3.2497 - 2.9529 0.99 1244 139 0.1686 0.2236 REMARK 3 5 2.9529 - 2.7413 1.00 1257 127 0.1847 0.2363 REMARK 3 6 2.7413 - 2.5798 1.00 1239 125 0.1712 0.2431 REMARK 3 7 2.5798 - 2.4507 0.99 1216 156 0.1734 0.2380 REMARK 3 8 2.4507 - 2.3440 1.00 1220 151 0.1660 0.2509 REMARK 3 9 2.3440 - 2.2538 1.00 1205 152 0.1710 0.2435 REMARK 3 10 2.2538 - 2.1761 0.99 1233 129 0.1737 0.2362 REMARK 3 11 2.1761 - 2.1080 1.00 1201 151 0.1850 0.2508 REMARK 3 12 2.1080 - 2.0478 1.00 1238 110 0.1820 0.2784 REMARK 3 13 2.0478 - 1.9939 1.00 1238 118 0.1857 0.2470 REMARK 3 14 1.9939 - 1.9452 0.94 1150 119 0.2040 0.2697 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.710 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 2258 REMARK 3 ANGLE : 0.829 3072 REMARK 3 CHIRALITY : 0.052 348 REMARK 3 PLANARITY : 0.006 401 REMARK 3 DIHEDRAL : 17.849 1358 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 122 THROUGH 144 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.2759 -30.7101 34.8077 REMARK 3 T TENSOR REMARK 3 T11: 0.2362 T22: 0.2921 REMARK 3 T33: 0.2408 T12: 0.0250 REMARK 3 T13: -0.0066 T23: 0.0006 REMARK 3 L TENSOR REMARK 3 L11: 0.1640 L22: 0.3508 REMARK 3 L33: 0.1589 L12: 0.0112 REMARK 3 L13: 0.1337 L23: 0.1273 REMARK 3 S TENSOR REMARK 3 S11: 0.0340 S12: -0.0511 S13: 0.0492 REMARK 3 S21: -0.0006 S22: 0.0163 S23: -0.1948 REMARK 3 S31: 0.0882 S32: 0.1196 S33: 0.0001 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 145 THROUGH 161 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.7653 -11.6618 23.2990 REMARK 3 T TENSOR REMARK 3 T11: 0.4626 T22: 0.3875 REMARK 3 T33: 0.3482 T12: 0.0836 REMARK 3 T13: -0.1122 T23: -0.0315 REMARK 3 L TENSOR REMARK 3 L11: 0.2125 L22: 0.0118 REMARK 3 L33: 0.1892 L12: 0.0559 REMARK 3 L13: -0.2051 L23: -0.0455 REMARK 3 S TENSOR REMARK 3 S11: -0.4882 S12: 0.0868 S13: -0.0718 REMARK 3 S21: -0.6596 S22: 0.2156 S23: 0.7832 REMARK 3 S31: -0.3471 S32: -1.0039 S33: -0.0201 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 162 THROUGH 199 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.5230 -7.9380 10.3145 REMARK 3 T TENSOR REMARK 3 T11: 0.2971 T22: 0.2805 REMARK 3 T33: 0.2809 T12: 0.0272 REMARK 3 T13: 0.0096 T23: -0.0247 REMARK 3 L TENSOR REMARK 3 L11: 0.4271 L22: 0.3014 REMARK 3 L33: 0.2298 L12: 0.1388 REMARK 3 L13: 0.1732 L23: -0.1846 REMARK 3 S TENSOR REMARK 3 S11: 0.0464 S12: -0.1673 S13: 0.3303 REMARK 3 S21: 0.1555 S22: 0.0297 S23: 0.2312 REMARK 3 S31: -0.2431 S32: -0.4578 S33: 0.0001 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 200 THROUGH 261 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.8889 -16.2078 17.7239 REMARK 3 T TENSOR REMARK 3 T11: 0.2273 T22: 0.2241 REMARK 3 T33: 0.2469 T12: -0.0097 REMARK 3 T13: -0.0007 T23: -0.0010 REMARK 3 L TENSOR REMARK 3 L11: 0.1428 L22: 0.2745 REMARK 3 L33: 0.5021 L12: -0.0100 REMARK 3 L13: 0.2287 L23: -0.3529 REMARK 3 S TENSOR REMARK 3 S11: -0.0573 S12: -0.0255 S13: 0.0165 REMARK 3 S21: 0.0125 S22: -0.0425 S23: -0.1031 REMARK 3 S31: -0.2045 S32: 0.0859 S33: -0.0001 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 262 THROUGH 327 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.5463 -18.1908 9.6194 REMARK 3 T TENSOR REMARK 3 T11: 0.1952 T22: 0.2216 REMARK 3 T33: 0.2076 T12: 0.0130 REMARK 3 T13: -0.0043 T23: -0.0071 REMARK 3 L TENSOR REMARK 3 L11: 0.5240 L22: 0.5965 REMARK 3 L33: 0.7897 L12: -0.2824 REMARK 3 L13: 0.4275 L23: -0.1823 REMARK 3 S TENSOR REMARK 3 S11: -0.0270 S12: 0.0122 S13: 0.0319 REMARK 3 S21: -0.0957 S22: 0.0081 S23: -0.0236 REMARK 3 S31: 0.0958 S32: -0.0083 S33: 0.0000 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 328 THROUGH 379 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.4887 -28.3076 32.1036 REMARK 3 T TENSOR REMARK 3 T11: 0.2267 T22: 0.2495 REMARK 3 T33: 0.2656 T12: 0.0148 REMARK 3 T13: -0.0008 T23: -0.0113 REMARK 3 L TENSOR REMARK 3 L11: 0.5621 L22: 0.6187 REMARK 3 L33: 0.4435 L12: 0.2580 REMARK 3 L13: -0.1258 L23: -0.4563 REMARK 3 S TENSOR REMARK 3 S11: -0.0864 S12: -0.1963 S13: 0.0094 REMARK 3 S21: 0.0843 S22: -0.0094 S23: 0.1469 REMARK 3 S31: 0.0360 S32: -0.1305 S33: 0.0000 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 380 THROUGH 395 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.3591 -8.6878 32.6897 REMARK 3 T TENSOR REMARK 3 T11: 0.6832 T22: 0.5178 REMARK 3 T33: 0.5633 T12: -0.1882 REMARK 3 T13: -0.0716 T23: 0.0596 REMARK 3 L TENSOR REMARK 3 L11: 0.0575 L22: 0.1007 REMARK 3 L33: 0.0010 L12: -0.0777 REMARK 3 L13: 0.0059 L23: -0.0147 REMARK 3 S TENSOR REMARK 3 S11: -0.4108 S12: 0.3001 S13: 0.6164 REMARK 3 S21: 0.4022 S22: 0.2199 S23: -1.0606 REMARK 3 S31: -0.2623 S32: 0.1649 S33: 0.0037 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 7 THROUGH 13 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.7527 -25.9978 11.3682 REMARK 3 T TENSOR REMARK 3 T11: 0.2422 T22: 0.3441 REMARK 3 T33: 0.2859 T12: 0.0143 REMARK 3 T13: -0.0136 T23: -0.0094 REMARK 3 L TENSOR REMARK 3 L11: 0.0659 L22: 0.2102 REMARK 3 L33: 0.1003 L12: 0.0598 REMARK 3 L13: 0.0862 L23: 0.0580 REMARK 3 S TENSOR REMARK 3 S11: 0.3038 S12: -0.1941 S13: -0.0904 REMARK 3 S21: 0.4677 S22: -0.0928 S23: -0.0540 REMARK 3 S31: 0.1473 S32: -0.3255 S33: -0.0031 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5Z93 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 05-FEB-18. REMARK 100 THE DEPOSITION ID IS D_1300006686. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-NOV-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19211 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.945 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 6.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.98 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.01 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.95 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M MES PH 6.5, 25% PEG 1000, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 16.68050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 44.21550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.01250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 44.21550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 16.68050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 43.01250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1040 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13020 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 117 REMARK 465 SER A 118 REMARK 465 ASP A 119 REMARK 465 LYS A 120 REMARK 465 GLY A 121 REMARK 465 GLY A 396 REMARK 465 PRO A 397 REMARK 465 ASP A 398 REMARK 465 LYS A 399 REMARK 465 THR B 6 REMARK 465 LYS B 14 REMARK 465 ALA B 15 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 564 O HOH A 659 2.13 REMARK 500 O HOH A 627 O HOH A 639 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 138 11.71 -142.20 REMARK 500 ASP A 290 48.18 -79.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 256 SG REMARK 620 2 CYS A 259 SG 106.2 REMARK 620 3 CYS A 280 SG 109.7 107.9 REMARK 620 4 CYS A 283 SG 96.2 118.9 116.6 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 401 DBREF 5Z93 A 117 399 UNP Q9NTG7 SIR3_HUMAN 117 399 DBREF 5Z93 B 6 15 UNP V9H1G0 V9H1G0_HUMAN 7 16 SEQRES 1 A 283 SER SER ASP LYS GLY LYS LEU SER LEU GLN ASP VAL ALA SEQRES 2 A 283 GLU LEU ILE ARG ALA ARG ALA CYS GLN ARG VAL VAL VAL SEQRES 3 A 283 MET VAL GLY ALA GLY ILE SER THR PRO SER GLY ILE PRO SEQRES 4 A 283 ASP PHE ARG SER PRO GLY SER GLY LEU TYR SER ASN LEU SEQRES 5 A 283 GLN GLN TYR ASP LEU PRO TYR PRO GLU ALA ILE PHE GLU SEQRES 6 A 283 LEU PRO PHE PHE PHE HIS ASN PRO LYS PRO PHE PHE THR SEQRES 7 A 283 LEU ALA LYS GLU LEU TYR PRO GLY ASN TYR LYS PRO ASN SEQRES 8 A 283 VAL THR HIS TYR PHE LEU ARG LEU LEU HIS ASP LYS GLY SEQRES 9 A 283 LEU LEU LEU ARG LEU TYR THR GLN ASN ILE ASP GLY LEU SEQRES 10 A 283 GLU ARG VAL SER GLY ILE PRO ALA SER LYS LEU VAL GLU SEQRES 11 A 283 ALA HIS GLY THR PHE ALA SER ALA THR CYS THR VAL CYS SEQRES 12 A 283 GLN ARG PRO PHE PRO GLY GLU ASP ILE ARG ALA ASP VAL SEQRES 13 A 283 MET ALA ASP ARG VAL PRO ARG CYS PRO VAL CYS THR GLY SEQRES 14 A 283 VAL VAL LYS PRO ASP ILE VAL PHE PHE GLY GLU PRO LEU SEQRES 15 A 283 PRO GLN ARG PHE LEU LEU HIS VAL VAL ASP PHE PRO MET SEQRES 16 A 283 ALA ASP LEU LEU LEU ILE LEU GLY THR SER LEU GLU VAL SEQRES 17 A 283 GLU PRO PHE ALA SER LEU THR GLU ALA VAL ARG SER SER SEQRES 18 A 283 VAL PRO ARG LEU LEU ILE ASN ARG ASP LEU VAL GLY PRO SEQRES 19 A 283 LEU ALA TRP HIS PRO ARG SER ARG ASP VAL ALA GLN LEU SEQRES 20 A 283 GLY ASP VAL VAL HIS GLY VAL GLU SER LEU VAL GLU LEU SEQRES 21 A 283 LEU GLY TRP THR GLU GLU MET ARG ASP LEU VAL GLN ARG SEQRES 22 A 283 GLU THR GLY LYS LEU ASP GLY PRO ASP LYS SEQRES 1 B 10 THR ALA ARG KHB SER THR GLY GLY LYS ALA MODRES 5Z93 KHB B 9 LYS MODIFIED RESIDUE HET KHB B 9 15 HET ZN A 401 1 HETNAM KHB N~6~-[(3S)-3-HYDROXYBUTANOYL]-L-LYSINE HETNAM ZN ZINC ION FORMUL 2 KHB C10 H20 N2 O4 FORMUL 3 ZN ZN 2+ FORMUL 4 HOH *222(H2 O) HELIX 1 AA1 SER A 124 ALA A 134 1 11 HELIX 2 AA2 ALA A 146 GLY A 153 5 8 HELIX 3 AA3 GLY A 161 TYR A 171 1 11 HELIX 4 AA4 TYR A 175 PHE A 180 5 6 HELIX 5 AA5 GLU A 181 ASN A 188 1 8 HELIX 6 AA6 PRO A 189 LEU A 199 1 11 HELIX 7 AA7 ASN A 207 LYS A 219 1 13 HELIX 8 AA8 GLY A 232 SER A 237 1 6 HELIX 9 AA9 PRO A 240 SER A 242 5 3 HELIX 10 AB1 ILE A 268 ALA A 274 1 7 HELIX 11 AB2 PRO A 299 LEU A 303 5 5 HELIX 12 AB3 LEU A 304 ALA A 312 1 9 HELIX 13 AB4 PHE A 327 ALA A 333 5 7 HELIX 14 AB5 VAL A 348 HIS A 354 1 7 HELIX 15 AB6 ASP A 365 GLY A 378 1 14 HELIX 16 AB7 TRP A 379 ASP A 395 1 17 SHEET 1 AA1 6 LEU A 244 GLU A 246 0 SHEET 2 AA1 6 LEU A 222 THR A 227 1 N THR A 227 O VAL A 245 SHEET 3 AA1 6 VAL A 140 VAL A 144 1 N VAL A 142 O TYR A 226 SHEET 4 AA1 6 LEU A 314 LEU A 318 1 O LEU A 316 N MET A 143 SHEET 5 AA1 6 ARG A 340 ASN A 344 1 O ILE A 343 N ILE A 317 SHEET 6 AA1 6 ASP A 359 LEU A 363 1 O GLN A 362 N LEU A 342 SHEET 1 AA2 3 PRO A 262 PRO A 264 0 SHEET 2 AA2 3 GLY A 249 CYS A 256 -1 N ALA A 254 O PHE A 263 SHEET 3 AA2 3 VAL A 287 ILE A 291 -1 O ASP A 290 N SER A 253 SHEET 1 AA3 2 VAL A 324 GLU A 325 0 SHEET 2 AA3 2 SER B 10 THR B 11 -1 O SER B 10 N GLU A 325 LINK SG CYS A 256 ZN ZN A 401 1555 1555 2.38 LINK SG CYS A 259 ZN ZN A 401 1555 1555 2.28 LINK SG CYS A 280 ZN ZN A 401 1555 1555 2.29 LINK SG CYS A 283 ZN ZN A 401 1555 1555 2.23 LINK C ARG B 8 N KHB B 9 1555 1555 1.32 LINK C KHB B 9 N SER B 10 1555 1555 1.33 CISPEP 1 GLU A 325 PRO A 326 0 2.09 SITE 1 AC1 4 CYS A 256 CYS A 259 CYS A 280 CYS A 283 CRYST1 33.361 86.025 88.431 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.029975 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011625 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011308 0.00000