HEADER OXIDOREDUCTASE 03-FEB-18 5Z9I TITLE IDENTIFICATION OF THE FUNCTIONS OF UNUSUAL CYTOCHROME P450-LIKE TITLE 2 MONOOXYGENASES INVOLVED IN MICROBIAL SECONDARY METABLISM COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE P450-LIKE ENZYME; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES HIMASTATINICUS ATCC 53653; SOURCE 3 ORGANISM_TAXID: 457427; SOURCE 4 GENE: HMTS; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS CYTOCHROME P450, MONOOXYGENASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR M.LU,L.LIN,C.ZHANG,Y.CHEN REVDAT 3 27-MAR-24 5Z9I 1 REMARK REVDAT 2 06-MAY-20 5Z9I 1 JRNL REVDAT 1 06-FEB-19 5Z9I 0 JRNL AUTH C.ZHANG,M.LU,L.LIN,Z.HUANG,R.ZHANG,X.WU,Y.CHEN JRNL TITL RIBOFLAVIN IS DIRECTLY INVOLVED IN THE N-DEALKYLATION JRNL TITL 2 CATALYZED BY BACTERIAL CYTOCHROME P450 MONOOXYGENASES. JRNL REF CHEMBIOCHEM 2020 JRNL REFN ESSN 1439-7633 JRNL PMID 32243060 JRNL DOI 10.1002/CBIC.202000071 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.4_1496 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.28 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 40568 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.160 REMARK 3 FREE R VALUE TEST SET COUNT : 3715 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.2918 - 6.5903 0.98 1354 142 0.1630 0.1998 REMARK 3 2 6.5903 - 5.2334 0.99 1350 140 0.2106 0.2623 REMARK 3 3 5.2334 - 4.5726 0.99 1368 137 0.1649 0.2352 REMARK 3 4 4.5726 - 4.1548 1.00 1400 136 0.1512 0.2054 REMARK 3 5 4.1548 - 3.8572 1.00 1353 138 0.1560 0.1470 REMARK 3 6 3.8572 - 3.6299 0.99 1355 136 0.1635 0.2065 REMARK 3 7 3.6299 - 3.4482 0.99 1372 140 0.1640 0.2436 REMARK 3 8 3.4482 - 3.2981 1.00 1369 138 0.1775 0.2143 REMARK 3 9 3.2981 - 3.1712 1.00 1374 138 0.1828 0.2376 REMARK 3 10 3.1712 - 3.0618 1.00 1375 134 0.1981 0.2832 REMARK 3 11 3.0618 - 2.9661 1.00 1375 141 0.1846 0.2640 REMARK 3 12 2.9661 - 2.8813 1.00 1373 138 0.1895 0.2442 REMARK 3 13 2.8813 - 2.8054 1.00 1390 137 0.1819 0.2127 REMARK 3 14 2.8054 - 2.7370 0.99 1345 129 0.1887 0.2512 REMARK 3 15 2.7370 - 2.6748 1.00 1388 142 0.2013 0.2685 REMARK 3 16 2.6748 - 2.6179 1.00 1379 141 0.2068 0.2341 REMARK 3 17 2.6179 - 2.5655 1.00 1369 137 0.2001 0.2340 REMARK 3 18 2.5655 - 2.5171 1.00 1359 141 0.2070 0.2719 REMARK 3 19 2.5171 - 2.4722 1.00 1402 133 0.2048 0.3097 REMARK 3 20 2.4722 - 2.4303 1.00 1363 136 0.2188 0.2901 REMARK 3 21 2.4303 - 2.3911 1.00 1380 145 0.2201 0.2896 REMARK 3 22 2.3911 - 2.3543 0.99 1362 137 0.2244 0.2899 REMARK 3 23 2.3543 - 2.3196 1.00 1366 141 0.2312 0.2879 REMARK 3 24 2.3196 - 2.2870 1.00 1375 138 0.2345 0.2790 REMARK 3 25 2.2870 - 2.2561 0.99 1365 139 0.2407 0.3065 REMARK 3 26 2.2561 - 2.2268 0.99 1352 136 0.2365 0.3139 REMARK 3 27 2.2268 - 2.1989 0.90 1240 125 0.2397 0.2854 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.260 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.720 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 36.63 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.32 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 3041 REMARK 3 ANGLE : 1.471 4159 REMARK 3 CHIRALITY : 0.046 464 REMARK 3 PLANARITY : 0.006 544 REMARK 3 DIHEDRAL : 13.454 1083 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 7 THROUGH 67 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.6587 -12.7299 32.1109 REMARK 3 T TENSOR REMARK 3 T11: 0.6467 T22: 0.4760 REMARK 3 T33: 0.2866 T12: -0.0827 REMARK 3 T13: -0.0154 T23: -0.0146 REMARK 3 L TENSOR REMARK 3 L11: 1.2760 L22: 2.8657 REMARK 3 L33: 3.0039 L12: 0.9785 REMARK 3 L13: -0.1008 L23: 0.5980 REMARK 3 S TENSOR REMARK 3 S11: 0.3502 S12: -0.4533 S13: 0.1935 REMARK 3 S21: 1.0344 S22: -0.4140 S23: -0.0073 REMARK 3 S31: -0.0206 S32: -0.4106 S33: 0.0672 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 68 THROUGH 149 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.3356 -8.7426 7.6354 REMARK 3 T TENSOR REMARK 3 T11: 0.1515 T22: 0.2735 REMARK 3 T33: 0.2403 T12: 0.0340 REMARK 3 T13: -0.0087 T23: 0.0041 REMARK 3 L TENSOR REMARK 3 L11: 1.5260 L22: 2.5377 REMARK 3 L33: 2.3211 L12: 0.2388 REMARK 3 L13: 0.0888 L23: 0.6474 REMARK 3 S TENSOR REMARK 3 S11: -0.0208 S12: 0.1566 S13: 0.0402 REMARK 3 S21: -0.0925 S22: 0.0727 S23: -0.0598 REMARK 3 S31: -0.1628 S32: -0.1092 S33: -0.0577 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 150 THROUGH 223 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.6385 -13.6766 5.1513 REMARK 3 T TENSOR REMARK 3 T11: 0.2451 T22: 0.4072 REMARK 3 T33: 0.3449 T12: 0.0408 REMARK 3 T13: -0.0823 T23: -0.0391 REMARK 3 L TENSOR REMARK 3 L11: 5.2133 L22: 4.0359 REMARK 3 L33: 2.7066 L12: 0.2565 REMARK 3 L13: -0.4562 L23: -0.1998 REMARK 3 S TENSOR REMARK 3 S11: -0.2266 S12: -0.1373 S13: 0.6365 REMARK 3 S21: 0.1977 S22: 0.2526 S23: 0.0431 REMARK 3 S31: -0.0350 S32: -0.2178 S33: -0.0376 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 224 THROUGH 398 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.1451 -5.2173 23.6610 REMARK 3 T TENSOR REMARK 3 T11: 0.3564 T22: 0.3085 REMARK 3 T33: 0.3314 T12: 0.0188 REMARK 3 T13: -0.1061 T23: -0.0202 REMARK 3 L TENSOR REMARK 3 L11: 1.7599 L22: 3.3702 REMARK 3 L33: 0.8476 L12: 1.2136 REMARK 3 L13: 0.4425 L23: 0.5305 REMARK 3 S TENSOR REMARK 3 S11: 0.1530 S12: -0.2910 S13: 0.0704 REMARK 3 S21: 0.6751 S22: -0.1583 S23: -0.3850 REMARK 3 S31: -0.0949 S32: -0.0613 S33: 0.0357 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURE FACTOR FILE CONTAINS REMARK 3 FRIEDEL PAIRS IN I_PLUS/MINUS COLUMNS REMARK 4 REMARK 4 5Z9I COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 14-FEB-18. REMARK 100 THE DEPOSITION ID IS D_1300006702. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-APR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL18U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97791 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40569 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 45.282 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 3.442 REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.1700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.33 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.21 REMARK 200 R MERGE FOR SHELL (I) : 0.44000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.880 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350, BIS-TRIS HYDROCHLORIDE, REMARK 280 AMMONIUM ACETATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.99350 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 49.41450 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.24600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 49.41450 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.99350 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.24600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1230 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16780 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 SER A 2 REMARK 465 THR A 3 REMARK 465 SER A 4 REMARK 465 PRO A 5 REMARK 465 VAL A 6 REMARK 465 PHE A 166 REMARK 465 GLU A 167 REMARK 465 SER A 168 REMARK 465 PRO A 169 REMARK 465 GLU A 170 REMARK 465 THR A 171 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 19 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 22 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 25 CG CD CE NZ REMARK 470 GLU A 31 CG CD OE1 OE2 REMARK 470 GLU A 32 CG CD OE1 OE2 REMARK 470 GLN A 34 CG CD OE1 NE2 REMARK 470 ASP A 62 CG OD1 OD2 REMARK 470 ILE A 64 CG1 CG2 CD1 REMARK 470 LYS A 65 CG CD CE NZ REMARK 470 ARG A 85 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 103 CG CD OE1 OE2 REMARK 470 GLU A 112 CG CD OE1 OE2 REMARK 470 GLU A 118 CG CD OE1 OE2 REMARK 470 GLN A 122 CG CD OE1 NE2 REMARK 470 ARG A 153 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 160 CG CD1 CD2 REMARK 470 ASP A 161 CG OD1 OD2 REMARK 470 SER A 163 OG REMARK 470 LYS A 165 CG CD CE NZ REMARK 470 VAL A 172 CG1 CG2 REMARK 470 LEU A 173 CG CD1 CD2 REMARK 470 GLN A 175 CG CD OE1 NE2 REMARK 470 GLU A 177 CG CD OE1 OE2 REMARK 470 GLU A 178 CG CD OE1 OE2 REMARK 470 LEU A 179 CG CD1 CD2 REMARK 470 HIS A 180 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 181 CG CD CE NZ REMARK 470 GLU A 199 CG CD OE1 OE2 REMARK 470 LYS A 202 CG CD CE NZ REMARK 470 ARG A 203 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 205 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 220 CG CD OE1 NE2 REMARK 470 GLU A 296 CG CD OE1 OE2 REMARK 470 GLU A 323 CG CD OE1 OE2 REMARK 470 SER A 333 OG REMARK 470 LEU A 352 CG CD1 CD2 REMARK 470 ARG A 372 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLY A 219 N - CA - C ANGL. DEV. = -20.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 94 74.48 -69.33 REMARK 500 PHE A 129 -58.99 -147.11 REMARK 500 ASP A 218 51.81 38.98 REMARK 500 PHE A 256 74.04 -114.14 REMARK 500 ASP A 266 86.06 -159.06 REMARK 500 ALA A 298 -115.65 52.46 REMARK 500 ASN A 335 71.66 -160.42 REMARK 500 GLN A 383 58.65 -92.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 401 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 347 SG REMARK 620 2 HEM A 401 NA 96.7 REMARK 620 3 HEM A 401 NB 84.7 89.0 REMARK 620 4 HEM A 401 NC 90.8 170.2 85.4 REMARK 620 5 HEM A 401 ND 101.5 92.7 173.3 91.9 REMARK 620 6 HOH A 563 O 160.7 79.2 76.4 91.7 97.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEM A 401 DBREF 5Z9I A 3 398 UNP G0LWB2 G0LWB2_9ACTN 2 397 SEQADV 5Z9I GLY A 1 UNP G0LWB2 EXPRESSION TAG SEQADV 5Z9I SER A 2 UNP G0LWB2 EXPRESSION TAG SEQADV 5Z9I PHE A 340 UNP G0LWB2 LEU 339 ENGINEERED MUTATION SEQRES 1 A 398 GLY SER THR SER PRO VAL ALA GLN TRP GLU PHE HIS PRO SEQRES 2 A 398 GLY HIS PHE TRP MET ARG GLY LYS ARG PRO ASP LYS ILE SEQRES 3 A 398 VAL ASP TYR ASP GLU GLU LEU GLN LEU TRP ASN VAL TYR SEQRES 4 A 398 GLY TYR PRO GLU SER ALA ALA ILE LEU SER ASN PRO LYS SEQRES 5 A 398 VAL PHE SER SER ASP THR MET ARG LEU ASP PRO ILE LYS SEQRES 6 A 398 LEU ASP GLU ALA ILE VAL GLU GLY ASP PHE ALA HIS THR SEQRES 7 A 398 ASP PRO PRO LYS HIS ARG ARG LEU ARG GLY LEU VAL ASP SEQRES 8 A 398 HIS ALA PHE THR PRO SER LEU VAL ALA LYS MET GLU SER SEQRES 9 A 398 ARG VAL HIS GLY ILE ILE HIS GLU LEU LEU ASP GLY VAL SEQRES 10 A 398 GLU GLY LYS SER GLN PHE ASP LEU VAL ALA GLU PHE ALA SEQRES 11 A 398 ALA PRO LEU PRO LEU ILE MET ILE SER ASP LEU LEU GLY SEQRES 12 A 398 VAL PRO GLU SER ASP ARG ALA LEU PHE ARG GLN TRP MET SEQRES 13 A 398 ASP LYS MET LEU ASP GLY SER GLU LYS PHE GLU SER PRO SEQRES 14 A 398 GLU THR VAL LEU GLU GLN GLU GLU GLU LEU HIS LYS GLU SEQRES 15 A 398 LEU GLU LEU LEU TRP GLU MET ARG ASP TYR TRP HIS GLU SEQRES 16 A 398 ARG ALA ALA GLU SER ARG LYS ARG PRO ARG GLU ASP LEU SEQRES 17 A 398 ILE SER GLN LEU VAL HIS ALA GLU VAL ASP GLY GLN LYS SEQRES 18 A 398 LEU ASN ASP SER GLN ILE SER ASN ILE ALA ASN ARG LEU SEQRES 19 A 398 LEU VAL ASN GLY HIS LEU THR THR ALA MET LEU ILE ALA SEQRES 20 A 398 ASN THR MET LEU CYS LEU ASP ALA PHE SER ASP GLN ASP SEQRES 21 A 398 ALA ARG VAL ARG ALA ASP ARG SER LEU VAL PRO ALA LEU SEQRES 22 A 398 LEU GLU GLU SER MET ARG TYR MET SER PRO ILE CYS GLY SEQRES 23 A 398 VAL GLY ARG ALA THR ASN SER GLU VAL GLU VAL ALA GLY SEQRES 24 A 398 THR VAL ILE PRO LYS ASP GLN LEU LEU LEU VAL TRP THR SEQRES 25 A 398 GLY ALA ALA ASN ARG ASP GLU ARG GLN PHE GLU LYS PRO SEQRES 26 A 398 ASP VAL PHE ASP ALA GLY ARG SER PRO ASN ALA HIS LEU SEQRES 27 A 398 GLY PHE GLY ARG GLY ILE HIS PHE CYS LEU GLY ARG GLN SEQRES 28 A 398 LEU ALA ARG MET GLU SER LYS ALA ALA VAL GLU ILE LEU SEQRES 29 A 398 LEU ASP ARG LEU PRO THR LEU ARG ALA ASP PRO ALA ASN SEQRES 30 A 398 PRO PRO THR PHE LEU GLN VAL VAL ASP ALA SER GLY VAL SEQRES 31 A 398 ALA THR LEU PRO VAL VAL THR GLN HET HEM A 401 43 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETSYN HEM HEME FORMUL 2 HEM C34 H32 FE N4 O4 FORMUL 3 HOH *113(H2 O) HELIX 1 AA1 HIS A 15 GLY A 20 5 6 HELIX 2 AA2 GLY A 40 SER A 49 1 10 HELIX 3 AA3 ASP A 57 ASP A 62 5 6 HELIX 4 AA4 ASP A 67 GLU A 72 1 6 HELIX 5 AA5 ASP A 74 THR A 78 5 5 HELIX 6 AA6 PRO A 81 PHE A 94 1 14 HELIX 7 AA7 THR A 95 GLY A 116 1 22 HELIX 8 AA8 LEU A 125 PHE A 129 1 5 HELIX 9 AA9 ALA A 131 GLY A 143 1 13 HELIX 10 AB1 PRO A 145 SER A 147 5 3 HELIX 11 AB2 ASP A 148 LYS A 165 1 18 HELIX 12 AB3 LEU A 173 ARG A 203 1 31 HELIX 13 AB4 ASP A 207 ALA A 215 1 9 HELIX 14 AB5 ASN A 223 PHE A 256 1 34 HELIX 15 AB6 PHE A 256 ALA A 265 1 10 HELIX 16 AB7 ASP A 266 SER A 268 5 3 HELIX 17 AB8 LEU A 269 MET A 281 1 13 HELIX 18 AB9 TRP A 311 ASN A 316 1 6 HELIX 19 AC1 GLY A 349 LEU A 368 1 20 SHEET 1 AA1 5 VAL A 27 ASP A 30 0 SHEET 2 AA1 5 LEU A 35 VAL A 38 -1 O LEU A 35 N ASP A 30 SHEET 3 AA1 5 LEU A 307 VAL A 310 1 O LEU A 309 N TRP A 36 SHEET 4 AA1 5 VAL A 287 THR A 291 -1 N ARG A 289 O LEU A 308 SHEET 5 AA1 5 PHE A 54 SER A 55 -1 N SER A 55 O ALA A 290 SHEET 1 AA2 3 GLN A 122 ASP A 124 0 SHEET 2 AA2 3 PRO A 394 VAL A 396 -1 O VAL A 395 N PHE A 123 SHEET 3 AA2 3 ARG A 372 ALA A 373 -1 N ARG A 372 O VAL A 396 SHEET 1 AA3 2 VAL A 295 VAL A 297 0 SHEET 2 AA3 2 THR A 300 ILE A 302 -1 O ILE A 302 N VAL A 295 SHEET 1 AA4 2 THR A 380 PHE A 381 0 SHEET 2 AA4 2 VAL A 390 THR A 392 -1 O ALA A 391 N THR A 380 LINK SG CYS A 347 FE HEM A 401 1555 1555 2.47 LINK FE HEM A 401 O HOH A 563 1555 1555 2.53 CISPEP 1 PRO A 63 ILE A 64 0 3.27 CISPEP 2 PRO A 80 PRO A 81 0 1.08 CISPEP 3 ASP A 218 GLY A 219 0 -10.18 CISPEP 4 SER A 333 PRO A 334 0 -7.94 SITE 1 AC1 20 PHE A 75 ALA A 76 HIS A 83 ARG A 87 SITE 2 AC1 20 ILE A 138 ASN A 237 GLY A 238 THR A 241 SITE 3 AC1 20 THR A 242 MET A 278 ARG A 289 GLY A 339 SITE 4 AC1 20 PHE A 340 HIS A 345 CYS A 347 GLY A 349 SITE 5 AC1 20 HOH A 515 HOH A 537 HOH A 563 HOH A 591 CRYST1 57.987 72.492 98.829 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017245 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013795 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010118 0.00000