HEADER TRANSFERASE 05-FEB-18 5Z9Y TITLE CRYSTAL STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS THIAZOLE SYNTHASE TITLE 2 (THIG) COMPLEXED WITH DXP COMPND MOL_ID: 1; COMPND 2 MOLECULE: THIAZOLE SYNTHASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.8.1.10; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS H37RV; SOURCE 3 ORGANISM_TAXID: 83332; SOURCE 4 STRAIN: ATCC 25618 / H37RV; SOURCE 5 GENE: THIG, RV0417, MTCY22G10.14; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS ALPHA-BETA BARREL, COVALENTLY BOUND, CARBINOLAMINE INTERMEDIATE, KEYWDS 2 BIOSYNTHETIC PROTEIN, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.ZHANG,B.ZHANG,Y.ZHAO,X.YANG,M.HUANG,P.CUI,W.ZHANG,J.LI,Y.ZHANG REVDAT 1 11-APR-18 5Z9Y 0 JRNL AUTH J.ZHANG,B.ZHANG,Y.ZHAO,X.YANG,M.HUANG,P.CUI,W.ZHANG,J.LI, JRNL AUTH 2 Y.ZHANG JRNL TITL SNAPSHOTS OF CATALYSIS: STRUCTURE OF COVALENTLY BOUND JRNL TITL 2 SUBSTRATE TRAPPED IN MYCOBACTERIUM TUBERCULOSIS THIAZOLE JRNL TITL 3 SYNTHASE (THIG). JRNL REF BIOCHEM. BIOPHYS. RES. V. 497 214 2018 JRNL REF 2 COMMUN. JRNL REFN ESSN 1090-2104 JRNL PMID 29428731 JRNL DOI 10.1016/J.BBRC.2018.02.056 REMARK 2 REMARK 2 RESOLUTION. 1.48 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.48 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 58.34 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 82151 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.165 REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : 0.188 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.950 REMARK 3 FREE R VALUE TEST SET COUNT : 4063 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 58.3803 - 4.5464 1.00 2985 150 0.1736 0.1954 REMARK 3 2 4.5464 - 3.6087 1.00 2835 126 0.1515 0.1687 REMARK 3 3 3.6087 - 3.1526 1.00 2775 133 0.1591 0.1828 REMARK 3 4 3.1526 - 2.8644 1.00 2792 118 0.1645 0.1804 REMARK 3 5 2.8644 - 2.6591 1.00 2721 142 0.1657 0.1725 REMARK 3 6 2.6591 - 2.5023 1.00 2746 138 0.1596 0.2061 REMARK 3 7 2.5023 - 2.3770 1.00 2706 127 0.1580 0.1600 REMARK 3 8 2.3770 - 2.2735 1.00 2729 138 0.1532 0.1928 REMARK 3 9 2.2735 - 2.1860 1.00 2685 162 0.1512 0.1752 REMARK 3 10 2.1860 - 2.1105 1.00 2705 131 0.1477 0.1857 REMARK 3 11 2.1105 - 2.0445 1.00 2657 159 0.1521 0.2015 REMARK 3 12 2.0445 - 1.9861 1.00 2719 130 0.1490 0.1918 REMARK 3 13 1.9861 - 1.9338 1.00 2682 148 0.1457 0.1763 REMARK 3 14 1.9338 - 1.8866 1.00 2666 146 0.1519 0.1830 REMARK 3 15 1.8866 - 1.8437 1.00 2686 132 0.1553 0.1763 REMARK 3 16 1.8437 - 1.8045 1.00 2676 142 0.1540 0.2067 REMARK 3 17 1.8045 - 1.7684 1.00 2637 155 0.1577 0.2027 REMARK 3 18 1.7684 - 1.7350 1.00 2701 137 0.1649 0.1674 REMARK 3 19 1.7350 - 1.7040 1.00 2685 124 0.1699 0.1941 REMARK 3 20 1.7040 - 1.6752 1.00 2699 132 0.1705 0.1912 REMARK 3 21 1.6752 - 1.6481 1.00 2638 149 0.1782 0.2167 REMARK 3 22 1.6481 - 1.6228 1.00 2630 165 0.1855 0.2185 REMARK 3 23 1.6228 - 1.5989 1.00 2646 153 0.1979 0.2149 REMARK 3 24 1.5989 - 1.5764 1.00 2662 156 0.1997 0.2235 REMARK 3 25 1.5764 - 1.5551 0.99 2642 139 0.2082 0.2307 REMARK 3 26 1.5551 - 1.5349 0.99 2642 147 0.2265 0.2698 REMARK 3 27 1.5349 - 1.5157 0.98 2575 147 0.2404 0.2546 REMARK 3 28 1.5157 - 1.4974 0.97 2589 124 0.2586 0.2538 REMARK 3 29 1.4974 - 1.4800 0.96 2577 113 0.2749 0.3104 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.140 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.021 3428 REMARK 3 ANGLE : 1.855 4690 REMARK 3 CHIRALITY : 0.118 592 REMARK 3 PLANARITY : 0.010 603 REMARK 3 DIHEDRAL : 12.210 1220 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 5 THROUGH 64 ) REMARK 3 ORIGIN FOR THE GROUP (A): 42.2377 -22.3244 6.8960 REMARK 3 T TENSOR REMARK 3 T11: 0.2114 T22: 0.2793 REMARK 3 T33: 0.2116 T12: -0.0006 REMARK 3 T13: 0.0177 T23: -0.0156 REMARK 3 L TENSOR REMARK 3 L11: 0.3174 L22: 0.1170 REMARK 3 L33: 0.2749 L12: -0.0926 REMARK 3 L13: -0.0292 L23: 0.2203 REMARK 3 S TENSOR REMARK 3 S11: 0.0367 S12: 0.0877 S13: 0.0156 REMARK 3 S21: 0.0031 S22: -0.0529 S23: 0.1039 REMARK 3 S31: -0.0132 S32: -0.1663 S33: 0.0001 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 65 THROUGH 92 ) REMARK 3 ORIGIN FOR THE GROUP (A): 41.6423 -5.8537 8.9002 REMARK 3 T TENSOR REMARK 3 T11: 0.2351 T22: 0.2579 REMARK 3 T33: 0.3144 T12: 0.0311 REMARK 3 T13: -0.0275 T23: 0.0369 REMARK 3 L TENSOR REMARK 3 L11: 0.1658 L22: 0.2547 REMARK 3 L33: 0.2925 L12: 0.0634 REMARK 3 L13: 0.0011 L23: -0.0166 REMARK 3 S TENSOR REMARK 3 S11: -0.2755 S12: 0.2515 S13: 0.1567 REMARK 3 S21: -0.6663 S22: 0.0622 S23: 0.1879 REMARK 3 S31: -0.0082 S32: -0.1923 S33: -0.0317 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 93 THROUGH 153 ) REMARK 3 ORIGIN FOR THE GROUP (A): 51.7191 -6.5695 15.9201 REMARK 3 T TENSOR REMARK 3 T11: 0.2243 T22: 0.2179 REMARK 3 T33: 0.2630 T12: -0.0089 REMARK 3 T13: 0.0249 T23: -0.0165 REMARK 3 L TENSOR REMARK 3 L11: 0.3175 L22: 0.5649 REMARK 3 L33: 0.4977 L12: 0.0051 REMARK 3 L13: 0.1954 L23: 0.0346 REMARK 3 S TENSOR REMARK 3 S11: -0.0566 S12: -0.0331 S13: 0.1558 REMARK 3 S21: 0.0173 S22: 0.0136 S23: 0.0072 REMARK 3 S31: -0.1380 S32: 0.0272 S33: 0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 154 THROUGH 245 ) REMARK 3 ORIGIN FOR THE GROUP (A): 59.9010 -24.9427 13.3166 REMARK 3 T TENSOR REMARK 3 T11: 0.1939 T22: 0.2048 REMARK 3 T33: 0.1792 T12: -0.0018 REMARK 3 T13: 0.0012 T23: -0.0115 REMARK 3 L TENSOR REMARK 3 L11: 0.2756 L22: 0.4834 REMARK 3 L33: 0.3576 L12: 0.0437 REMARK 3 L13: -0.1626 L23: 0.1648 REMARK 3 S TENSOR REMARK 3 S11: -0.0061 S12: -0.0039 S13: 0.0137 REMARK 3 S21: -0.0043 S22: -0.0071 S23: 0.0003 REMARK 3 S31: -0.0082 S32: 0.0096 S33: 0.0001 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 5 THROUGH 64 ) REMARK 3 ORIGIN FOR THE GROUP (A): 92.0230 0.7943 22.8351 REMARK 3 T TENSOR REMARK 3 T11: 0.2642 T22: 0.1951 REMARK 3 T33: 0.2353 T12: 0.0037 REMARK 3 T13: -0.0141 T23: -0.0135 REMARK 3 L TENSOR REMARK 3 L11: 0.0713 L22: 0.3894 REMARK 3 L33: 0.1796 L12: -0.0731 REMARK 3 L13: 0.0778 L23: 0.1294 REMARK 3 S TENSOR REMARK 3 S11: -0.0203 S12: -0.0219 S13: 0.1518 REMARK 3 S21: 0.1655 S22: 0.0910 S23: -0.1952 REMARK 3 S31: -0.1479 S32: 0.0047 S33: 0.0003 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 65 THROUGH 236 ) REMARK 3 ORIGIN FOR THE GROUP (A): 77.6033 -1.3274 18.2316 REMARK 3 T TENSOR REMARK 3 T11: 0.1818 T22: 0.1690 REMARK 3 T33: 0.1915 T12: -0.0067 REMARK 3 T13: 0.0125 T23: 0.0071 REMARK 3 L TENSOR REMARK 3 L11: 0.5795 L22: 0.7748 REMARK 3 L33: 0.4964 L12: -0.3340 REMARK 3 L13: 0.0800 L23: 0.0927 REMARK 3 S TENSOR REMARK 3 S11: -0.0141 S12: -0.0129 S13: 0.0354 REMARK 3 S21: -0.0085 S22: 0.0325 S23: 0.0457 REMARK 3 S31: -0.0323 S32: -0.0118 S33: -0.0000 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 237 THROUGH 247 ) REMARK 3 ORIGIN FOR THE GROUP (A): 82.5179 -24.9356 -6.5263 REMARK 3 T TENSOR REMARK 3 T11: 0.2333 T22: 0.2097 REMARK 3 T33: 0.2254 T12: -0.0132 REMARK 3 T13: 0.0163 T23: -0.0161 REMARK 3 L TENSOR REMARK 3 L11: 0.0030 L22: 0.0363 REMARK 3 L33: 0.0048 L12: 0.0129 REMARK 3 L13: -0.0026 L23: -0.0035 REMARK 3 S TENSOR REMARK 3 S11: -0.0486 S12: 0.1313 S13: 0.0589 REMARK 3 S21: -0.3254 S22: -0.0866 S23: -0.0414 REMARK 3 S31: -0.0668 S32: -0.1334 S33: 0.0005 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5Z9Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 07-FEB-18. REMARK 100 THE DEPOSITION ID IS D_1300006731. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-DEC-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97852 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 82214 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.480 REMARK 200 RESOLUTION RANGE LOW (A) : 61.660 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 36.10 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 26.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.48 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.51 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.6 REMARK 200 DATA REDUNDANCY IN SHELL : 20.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M SODIUM MALONATE PH 5.0, 20% REMARK 280 (W/V) PEG 3350, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 41.10667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 82.21333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 61.66000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 102.76667 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 20.55333 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 41.10667 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 82.21333 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 102.76667 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 61.66000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 20.55333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4380 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17950 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -29.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 0.866025 0.000000 58.33500 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 -101.03918 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 20.55333 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4680 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18010 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 0.866025 0.000000 58.33500 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 -101.03918 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 20.55333 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 1 REMARK 465 ALA A 2 REMARK 465 GLU A 3 REMARK 465 SER A 4 REMARK 465 ARG A 47 REMARK 465 ARG A 48 REMARK 465 VAL A 49 REMARK 465 ASP A 50 REMARK 465 ALA A 51 REMARK 465 ASP A 52 REMARK 465 GLY A 53 REMARK 465 GLY A 54 REMARK 465 THR A 55 REMARK 465 GLN A 246 REMARK 465 ALA A 247 REMARK 465 SER A 248 REMARK 465 SER A 249 REMARK 465 PRO A 250 REMARK 465 ALA A 251 REMARK 465 ARG A 252 REMARK 465 VAL B 1 REMARK 465 ALA B 2 REMARK 465 GLU B 3 REMARK 465 SER B 4 REMARK 465 ARG B 47 REMARK 465 ARG B 48 REMARK 465 VAL B 49 REMARK 465 ASP B 50 REMARK 465 ALA B 51 REMARK 465 ASP B 52 REMARK 465 GLY B 53 REMARK 465 GLY B 54 REMARK 465 THR B 55 REMARK 465 SER B 248 REMARK 465 SER B 249 REMARK 465 PRO B 250 REMARK 465 ALA B 251 REMARK 465 ARG B 252 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS A 98 C2 DXP A 301 1.63 REMARK 500 O HOH A 480 O HOH A 518 1.83 REMARK 500 NZ LYS B 98 O2 DXP B 301 1.87 REMARK 500 NZ LYS A 98 C1 DXP A 301 2.04 REMARK 500 O HOH B 409 O HOH B 415 2.06 REMARK 500 OE1 GLN A 86 O HOH A 401 2.06 REMARK 500 O HOH A 478 O HOH A 529 2.07 REMARK 500 O HOH A 510 O HOH A 537 2.10 REMARK 500 N SER B 75 O HOH B 401 2.14 REMARK 500 O HOH A 554 O HOH A 576 2.16 REMARK 500 O HOH A 402 O HOH A 419 2.17 REMARK 500 O HOH A 450 O HOH A 523 2.18 REMARK 500 NZ LYS A 98 O2 DXP A 301 2.19 REMARK 500 O HOH A 501 O HOH A 525 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 534 O HOH A 534 10554 1.80 REMARK 500 O HOH A 566 O HOH A 566 12545 1.83 REMARK 500 O HOH A 535 O HOH B 531 11655 1.98 REMARK 500 O HOH B 557 O HOH B 557 12545 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 16 NE - CZ - NH1 ANGL. DEV. = 4.4 DEGREES REMARK 500 ARG A 212 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ASP B 104 CB - CG - OD1 ANGL. DEV. = -6.0 DEGREES REMARK 500 ARG B 212 NE - CZ - NH1 ANGL. DEV. = 5.0 DEGREES REMARK 500 ARG B 212 NE - CZ - NH2 ANGL. DEV. = -4.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 72 30.34 -91.49 REMARK 500 ALA A 185 146.92 -174.89 REMARK 500 ALA A 207 -68.73 -137.70 REMARK 500 THR B 72 35.49 -91.20 REMARK 500 ALA B 73 133.25 -35.69 REMARK 500 ASP B 104 148.57 -175.11 REMARK 500 ALA B 207 -67.03 -134.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 580 DISTANCE = 6.80 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DXP A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide DXP B 301 and LYS B REMARK 800 98 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide DXP B 301 and LYS B REMARK 800 98 DBREF 5Z9Y A 2 252 UNP P9WG73 THIG_MYCTU 2 252 DBREF 5Z9Y B 2 252 UNP P9WG73 THIG_MYCTU 2 252 SEQADV 5Z9Y VAL A 1 UNP P9WG73 EXPRESSION TAG SEQADV 5Z9Y VAL B 1 UNP P9WG73 EXPRESSION TAG SEQRES 1 A 252 VAL ALA GLU SER LYS LEU VAL ILE GLY ASP ARG SER PHE SEQRES 2 A 252 ALA SER ARG LEU ILE MET GLY THR GLY GLY ALA THR ASN SEQRES 3 A 252 LEU ALA VAL LEU GLU GLN ALA LEU ILE ALA SER GLY THR SEQRES 4 A 252 GLU LEU THR THR VAL ALA ILE ARG ARG VAL ASP ALA ASP SEQRES 5 A 252 GLY GLY THR GLY LEU LEU ASP LEU LEU ASN ARG LEU GLY SEQRES 6 A 252 ILE THR PRO LEU PRO ASN THR ALA GLY SER ARG SER ALA SEQRES 7 A 252 ALA GLU ALA VAL LEU THR ALA GLN LEU ALA ARG GLU ALA SEQRES 8 A 252 LEU ASN THR ASN TRP VAL LYS LEU GLU VAL ILE ALA ASP SEQRES 9 A 252 GLU ARG THR LEU TRP PRO ASP ALA VAL GLU LEU VAL ARG SEQRES 10 A 252 ALA ALA GLU GLN LEU VAL ASP ASP GLY PHE VAL VAL LEU SEQRES 11 A 252 PRO TYR THR THR ASP ASP PRO VAL LEU ALA ARG ARG LEU SEQRES 12 A 252 GLU ASP THR GLY CYS ALA ALA VAL MET PRO LEU GLY SER SEQRES 13 A 252 PRO ILE GLY THR GLY LEU GLY ILE ALA ASN PRO HIS ASN SEQRES 14 A 252 ILE GLU MET ILE VAL ALA GLY ALA ARG VAL PRO VAL VAL SEQRES 15 A 252 LEU ASP ALA GLY ILE GLY THR ALA SER ASP ALA ALA LEU SEQRES 16 A 252 ALA MET GLU LEU GLY CYS ASP ALA VAL LEU LEU ALA SER SEQRES 17 A 252 ALA VAL THR ARG ALA ALA ASP PRO PRO ALA MET ALA ALA SEQRES 18 A 252 ALA MET ALA ALA ALA VAL THR ALA GLY TYR LEU ALA ARG SEQRES 19 A 252 CYS ALA GLY ARG ILE PRO LYS ARG PHE TRP ALA GLN ALA SEQRES 20 A 252 SER SER PRO ALA ARG SEQRES 1 B 252 VAL ALA GLU SER LYS LEU VAL ILE GLY ASP ARG SER PHE SEQRES 2 B 252 ALA SER ARG LEU ILE MET GLY THR GLY GLY ALA THR ASN SEQRES 3 B 252 LEU ALA VAL LEU GLU GLN ALA LEU ILE ALA SER GLY THR SEQRES 4 B 252 GLU LEU THR THR VAL ALA ILE ARG ARG VAL ASP ALA ASP SEQRES 5 B 252 GLY GLY THR GLY LEU LEU ASP LEU LEU ASN ARG LEU GLY SEQRES 6 B 252 ILE THR PRO LEU PRO ASN THR ALA GLY SER ARG SER ALA SEQRES 7 B 252 ALA GLU ALA VAL LEU THR ALA GLN LEU ALA ARG GLU ALA SEQRES 8 B 252 LEU ASN THR ASN TRP VAL LYS LEU GLU VAL ILE ALA ASP SEQRES 9 B 252 GLU ARG THR LEU TRP PRO ASP ALA VAL GLU LEU VAL ARG SEQRES 10 B 252 ALA ALA GLU GLN LEU VAL ASP ASP GLY PHE VAL VAL LEU SEQRES 11 B 252 PRO TYR THR THR ASP ASP PRO VAL LEU ALA ARG ARG LEU SEQRES 12 B 252 GLU ASP THR GLY CYS ALA ALA VAL MET PRO LEU GLY SER SEQRES 13 B 252 PRO ILE GLY THR GLY LEU GLY ILE ALA ASN PRO HIS ASN SEQRES 14 B 252 ILE GLU MET ILE VAL ALA GLY ALA ARG VAL PRO VAL VAL SEQRES 15 B 252 LEU ASP ALA GLY ILE GLY THR ALA SER ASP ALA ALA LEU SEQRES 16 B 252 ALA MET GLU LEU GLY CYS ASP ALA VAL LEU LEU ALA SER SEQRES 17 B 252 ALA VAL THR ARG ALA ALA ASP PRO PRO ALA MET ALA ALA SEQRES 18 B 252 ALA MET ALA ALA ALA VAL THR ALA GLY TYR LEU ALA ARG SEQRES 19 B 252 CYS ALA GLY ARG ILE PRO LYS ARG PHE TRP ALA GLN ALA SEQRES 20 B 252 SER SER PRO ALA ARG HET DXP A 301 13 HET DXP B 301 13 HETNAM DXP 1-DEOXY-D-XYLULOSE-5-PHOSPHATE FORMUL 3 DXP 2(C5 H11 O7 P) FORMUL 5 HOH *351(H2 O) HELIX 1 AA1 ASN A 26 GLY A 38 1 13 HELIX 2 AA2 LEU A 57 GLY A 65 1 9 HELIX 3 AA3 SER A 77 ASN A 93 1 17 HELIX 4 AA4 ASP A 111 ASP A 125 1 15 HELIX 5 AA5 ASP A 136 GLY A 147 1 12 HELIX 6 AA6 ASN A 166 GLY A 176 1 11 HELIX 7 AA7 THR A 189 LEU A 199 1 11 HELIX 8 AA8 ALA A 207 ARG A 212 1 6 HELIX 9 AA9 ASP A 215 GLY A 237 1 23 HELIX 10 AB1 ASN B 26 GLY B 38 1 13 HELIX 11 AB2 LEU B 57 GLY B 65 1 9 HELIX 12 AB3 SER B 77 ASN B 93 1 17 HELIX 13 AB4 ASP B 111 ASP B 125 1 15 HELIX 14 AB5 ASP B 136 GLY B 147 1 12 HELIX 15 AB6 ASN B 166 ALA B 177 1 12 HELIX 16 AB7 THR B 189 LEU B 199 1 11 HELIX 17 AB8 ALA B 207 ARG B 212 1 6 HELIX 18 AB9 ASP B 215 GLY B 237 1 23 SHEET 1 AA1 2 LEU A 6 ILE A 8 0 SHEET 2 AA1 2 ARG A 11 PHE A 13 -1 O PHE A 13 N LEU A 6 SHEET 1 AA2 5 THR A 67 ASN A 71 0 SHEET 2 AA2 5 LEU A 41 ALA A 45 1 N THR A 42 O THR A 67 SHEET 3 AA2 5 LEU A 17 GLY A 20 1 N MET A 19 O THR A 43 SHEET 4 AA2 5 ALA A 203 LEU A 206 1 O VAL A 204 N ILE A 18 SHEET 5 AA2 5 VAL A 182 LEU A 183 1 N LEU A 183 O LEU A 205 SHEET 1 AA3 3 TRP A 96 LEU A 99 0 SHEET 2 AA3 3 VAL A 128 THR A 133 1 O TYR A 132 N LEU A 99 SHEET 3 AA3 3 MET A 152 PRO A 153 1 O MET A 152 N THR A 133 SHEET 1 AA4 2 LEU B 6 ILE B 8 0 SHEET 2 AA4 2 ARG B 11 PHE B 13 -1 O PHE B 13 N LEU B 6 SHEET 1 AA5 5 THR B 67 ASN B 71 0 SHEET 2 AA5 5 LEU B 41 ALA B 45 1 N THR B 42 O LEU B 69 SHEET 3 AA5 5 LEU B 17 GLY B 20 1 N MET B 19 O THR B 43 SHEET 4 AA5 5 ALA B 203 LEU B 206 1 O VAL B 204 N ILE B 18 SHEET 5 AA5 5 VAL B 182 LEU B 183 1 N LEU B 183 O LEU B 205 SHEET 1 AA6 3 TRP B 96 LEU B 99 0 SHEET 2 AA6 3 VAL B 128 THR B 133 1 O TYR B 132 N LEU B 99 SHEET 3 AA6 3 MET B 152 PRO B 153 1 O MET B 152 N THR B 133 SHEET 1 AA7 2 ILE B 102 ASP B 104 0 SHEET 2 AA7 2 TRP B 109 PRO B 110 -1 O TRP B 109 N ALA B 103 LINK NZ LYS B 98 C1 DXP B 301 1555 1555 1.50 LINK NZ LYS B 98 C2 DXP B 301 1555 1555 1.56 SITE 1 AC1 15 THR A 43 ASN A 71 LYS A 98 GLU A 100 SITE 2 AC1 15 ILE A 158 GLY A 159 ASP A 184 ALA A 185 SITE 3 AC1 15 GLY A 186 LEU A 206 ALA A 207 SER A 208 SITE 4 AC1 15 HOH A 424 HOH A 456 HOH A 495 SITE 1 AC2 21 THR B 43 PRO B 70 ASN B 71 THR B 72 SITE 2 AC2 21 VAL B 97 LEU B 99 GLU B 100 LEU B 130 SITE 3 AC2 21 ILE B 158 GLY B 159 ASP B 184 ALA B 185 SITE 4 AC2 21 GLY B 186 LEU B 205 LEU B 206 ALA B 207 SITE 5 AC2 21 SER B 208 HOH B 429 HOH B 457 HOH B 459 SITE 6 AC2 21 HOH B 490 SITE 1 AC3 21 THR B 43 PRO B 70 ASN B 71 THR B 72 SITE 2 AC3 21 VAL B 97 LEU B 99 GLU B 100 LEU B 130 SITE 3 AC3 21 ILE B 158 GLY B 159 ASP B 184 ALA B 185 SITE 4 AC3 21 GLY B 186 LEU B 205 LEU B 206 ALA B 207 SITE 5 AC3 21 SER B 208 HOH B 429 HOH B 457 HOH B 459 SITE 6 AC3 21 HOH B 490 CRYST1 116.670 116.670 123.320 90.00 90.00 120.00 P 61 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008571 0.004949 0.000000 0.00000 SCALE2 0.000000 0.009897 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008109 0.00000