HEADER OXIDOREDUCTASE 06-FEB-18 5ZA0 TITLE A CRYO-PROTECTANT INDUCES THE CONFORMATIONAL CHANGE OF GLYCERALDEHYDE- TITLE 2 3-PHOSPHATE DEHYDROGENASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE A; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GAPDH-A,NAD-DEPENDENT GLYCERALDEHYDE-3-PHOSPHATE COMPND 5 DEHYDROGENASE; COMPND 6 EC: 1.2.1.12 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI K-12; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12 KEYWDS HYPOTHETICAL, OXIDOREDUCTASE, CRYO-PROTECTANT, GLYCOLYSIS EXPDTA X-RAY DIFFRACTION AUTHOR Y.J.KIM REVDAT 3 22-NOV-23 5ZA0 1 HETSYN REVDAT 2 29-JUL-20 5ZA0 1 COMPND REMARK HET HETNAM REVDAT 2 2 1 HETSYN FORMUL LINK SITE REVDAT 2 3 1 ATOM REVDAT 1 30-MAY-18 5ZA0 0 JRNL AUTH Y.J.KIM JRNL TITL A CRYOPROTECTANT INDUCES CONFORMATIONAL CHANGE IN JRNL TITL 2 GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE. JRNL REF ACTA CRYSTALLOGR F STRUCT V. 74 277 2018 JRNL REF 2 BIOL COMMUN JRNL REFN ESSN 2053-230X JRNL PMID 29717994 JRNL DOI 10.1107/S2053230X18004557 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0189 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.88 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 37461 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.205 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 2040 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2718 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.48 REMARK 3 BIN R VALUE (WORKING SET) : 0.1820 REMARK 3 BIN FREE R VALUE SET COUNT : 144 REMARK 3 BIN FREE R VALUE : 0.2040 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2451 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 28 REMARK 3 SOLVENT ATOMS : 170 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.88 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.03000 REMARK 3 B22 (A**2) : -0.03000 REMARK 3 B33 (A**2) : 0.06000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.117 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.111 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.068 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.220 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.896 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.935 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2518 ; 0.010 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3423 ; 1.284 ; 1.958 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 329 ; 6.062 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 100 ;40.573 ;25.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 406 ;12.380 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;17.162 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 412 ; 0.090 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1858 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1319 ; 0.584 ; 1.633 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1647 ; 0.943 ; 2.445 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1198 ; 0.898 ; 1.723 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3740 ; 2.757 ;22.965 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 331 REMARK 3 RESIDUE RANGE : A 401 A 402 REMARK 3 RESIDUE RANGE : A 501 A 670 REMARK 3 ORIGIN FOR THE GROUP (A): 41.4818 119.7013 24.5826 REMARK 3 T TENSOR REMARK 3 T11: 0.0647 T22: 0.0997 REMARK 3 T33: 0.1343 T12: 0.0124 REMARK 3 T13: -0.0638 T23: 0.0002 REMARK 3 L TENSOR REMARK 3 L11: 0.8391 L22: 1.3476 REMARK 3 L33: 0.7466 L12: 0.4928 REMARK 3 L13: 0.0947 L23: 0.0953 REMARK 3 S TENSOR REMARK 3 S11: -0.0995 S12: 0.1638 S13: 0.1739 REMARK 3 S21: -0.2241 S22: 0.0327 S23: 0.3967 REMARK 3 S31: -0.0670 S32: -0.1871 S33: 0.0667 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 5ZA0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-FEB-18. REMARK 100 THE DEPOSITION ID IS D_1300006647. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-FEB-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 7A (6B, 6C1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : DCM SI (111) CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39522 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 47.880 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1S7C REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.03 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULFATE, MES, PH 5.8, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 60.64750 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 60.64750 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 78.02800 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 60.64750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 39.01400 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 60.64750 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 117.04200 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 60.64750 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 117.04200 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 60.64750 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 39.01400 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 60.64750 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 60.64750 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 78.02800 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 60.64750 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 60.64750 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 78.02800 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 60.64750 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 117.04200 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 60.64750 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 39.01400 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 60.64750 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 39.01400 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 60.64750 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 117.04200 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 60.64750 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 60.64750 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 78.02800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 17710 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 44060 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -142.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 -60.64750 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 60.64750 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 78.02800 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 121.29500 REMARK 350 BIOMT2 3 0.000000 -1.000000 0.000000 242.59000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 -1.000000 0.000000 181.94250 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 181.94250 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 78.02800 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 561 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 23 CD CE NZ REMARK 470 LYS A 46 CD CE NZ REMARK 470 GLU A 59 CG CD OE1 OE2 REMARK 470 LYS A 61 CG CD CE NZ REMARK 470 LYS A 70 NZ REMARK 470 LYS A 71 NZ REMARK 470 ARG A 78 CD NE CZ NH1 NH2 REMARK 470 LYS A 84 CD CE NZ REMARK 470 GLU A 104 CD OE1 OE2 REMARK 470 LYS A 108 NZ REMARK 470 LYS A 115 CD CE NZ REMARK 470 LYS A 138 NZ REMARK 470 LYS A 192 CE NZ REMARK 470 LYS A 217 NZ REMARK 470 LYS A 249 NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 120 40.71 -95.40 REMARK 500 ASP A 125 -152.68 -121.83 REMARK 500 ASN A 135 22.36 -153.39 REMARK 500 ALA A 148 -144.51 59.49 REMARK 500 SER A 190 76.70 -153.83 REMARK 500 ASP A 193 85.29 -154.71 REMARK 500 VAL A 238 130.17 85.92 REMARK 500 VAL A 271 -60.30 -107.42 REMARK 500 REMARK 500 REMARK: NULL DBREF 5ZA0 A 1 331 UNP P0A9B2 G3P1_ECOLI 1 331 SEQRES 1 A 331 MET THR ILE LYS VAL GLY ILE ASN GLY PHE GLY ARG ILE SEQRES 2 A 331 GLY ARG ILE VAL PHE ARG ALA ALA GLN LYS ARG SER ASP SEQRES 3 A 331 ILE GLU ILE VAL ALA ILE ASN ASP LEU LEU ASP ALA ASP SEQRES 4 A 331 TYR MET ALA TYR MET LEU LYS TYR ASP SER THR HIS GLY SEQRES 5 A 331 ARG PHE ASP GLY THR VAL GLU VAL LYS ASP GLY HIS LEU SEQRES 6 A 331 ILE VAL ASN GLY LYS LYS ILE ARG VAL THR ALA GLU ARG SEQRES 7 A 331 ASP PRO ALA ASN LEU LYS TRP ASP GLU VAL GLY VAL ASP SEQRES 8 A 331 VAL VAL ALA GLU ALA THR GLY LEU PHE LEU THR ASP GLU SEQRES 9 A 331 THR ALA ARG LYS HIS ILE THR ALA GLY ALA LYS LYS VAL SEQRES 10 A 331 VAL MET THR GLY PRO SER LYS ASP ASN THR PRO MET PHE SEQRES 11 A 331 VAL LYS GLY ALA ASN PHE ASP LYS TYR ALA GLY GLN ASP SEQRES 12 A 331 ILE VAL SER ASN ALA SER CYS THR THR ASN CYS LEU ALA SEQRES 13 A 331 PRO LEU ALA LYS VAL ILE ASN ASP ASN PHE GLY ILE ILE SEQRES 14 A 331 GLU GLY LEU MET THR THR VAL HIS ALA THR THR ALA THR SEQRES 15 A 331 GLN LYS THR VAL ASP GLY PRO SER HIS LYS ASP TRP ARG SEQRES 16 A 331 GLY GLY ARG GLY ALA SER GLN ASN ILE ILE PRO SER SER SEQRES 17 A 331 THR GLY ALA ALA LYS ALA VAL GLY LYS VAL LEU PRO GLU SEQRES 18 A 331 LEU ASN GLY LYS LEU THR GLY MET ALA PHE ARG VAL PRO SEQRES 19 A 331 THR PRO ASN VAL SER VAL VAL ASP LEU THR VAL ARG LEU SEQRES 20 A 331 GLU LYS ALA ALA THR TYR GLU GLN ILE LYS ALA ALA VAL SEQRES 21 A 331 LYS ALA ALA ALA GLU GLY GLU MET LYS GLY VAL LEU GLY SEQRES 22 A 331 TYR THR GLU ASP ASP VAL VAL SER THR ASP PHE ASN GLY SEQRES 23 A 331 GLU VAL CYS THR SER VAL PHE ASP ALA LYS ALA GLY ILE SEQRES 24 A 331 ALA LEU ASN ASP ASN PHE VAL LYS LEU VAL SER TRP TYR SEQRES 25 A 331 ASP ASN GLU THR GLY TYR SER ASN LYS VAL LEU ASP LEU SEQRES 26 A 331 ILE ALA HIS ILE SER LYS HET GLC B 1 11 HET GLC B 2 12 HET SO4 A 401 5 HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETNAM SO4 SULFATE ION HETSYN GLC ALPHA-D-GLUCOSE; D-GLUCOSE; GLUCOSE FORMUL 2 GLC 2(C6 H12 O6) FORMUL 3 SO4 O4 S 2- FORMUL 4 HOH *170(H2 O) HELIX 1 AA1 GLY A 11 LYS A 23 1 13 HELIX 2 AA2 ASP A 37 TYR A 47 1 11 HELIX 3 AA3 ASP A 79 LEU A 83 5 5 HELIX 4 AA4 LYS A 84 GLY A 89 5 6 HELIX 5 AA5 THR A 102 ARG A 107 1 6 HELIX 6 AA6 ARG A 107 ALA A 112 1 6 HELIX 7 AA7 ASN A 135 TYR A 139 5 5 HELIX 8 AA8 SER A 149 GLY A 167 1 19 HELIX 9 AA9 TRP A 194 ARG A 198 5 5 HELIX 10 AB1 GLY A 199 ASN A 203 5 5 HELIX 11 AB2 GLY A 210 LEU A 219 1 10 HELIX 12 AB3 PRO A 220 ASN A 223 5 4 HELIX 13 AB4 THR A 252 GLY A 266 1 15 HELIX 14 AB5 VAL A 280 ASN A 285 5 6 HELIX 15 AB6 GLU A 315 SER A 330 1 16 SHEET 1 AA1 8 VAL A 58 LYS A 61 0 SHEET 2 AA1 8 HIS A 64 VAL A 67 -1 O ILE A 66 N GLU A 59 SHEET 3 AA1 8 LYS A 70 THR A 75 -1 O LYS A 70 N VAL A 67 SHEET 4 AA1 8 ILE A 27 ASN A 33 1 N ILE A 32 O ARG A 73 SHEET 5 AA1 8 ILE A 3 ASN A 8 1 N VAL A 5 O VAL A 30 SHEET 6 AA1 8 VAL A 92 GLU A 95 1 O ALA A 94 N GLY A 6 SHEET 7 AA1 8 LYS A 116 MET A 119 1 O VAL A 118 N VAL A 93 SHEET 8 AA1 8 ILE A 144 SER A 146 1 O VAL A 145 N MET A 119 SHEET 1 AA2 7 ILE A 205 SER A 207 0 SHEET 2 AA2 7 LEU A 226 VAL A 233 -1 O ARG A 232 N ILE A 205 SHEET 3 AA2 7 ILE A 168 ALA A 178 1 N HIS A 177 O PHE A 231 SHEET 4 AA2 7 SER A 239 LEU A 247 -1 O ASP A 242 N THR A 174 SHEET 5 AA2 7 PHE A 305 TYR A 312 -1 O SER A 310 N VAL A 241 SHEET 6 AA2 7 SER A 291 ASP A 294 -1 N ASP A 294 O VAL A 309 SHEET 7 AA2 7 LEU A 272 THR A 275 1 N GLY A 273 O SER A 291 SHEET 1 AA3 6 ILE A 205 SER A 207 0 SHEET 2 AA3 6 LEU A 226 VAL A 233 -1 O ARG A 232 N ILE A 205 SHEET 3 AA3 6 ILE A 168 ALA A 178 1 N HIS A 177 O PHE A 231 SHEET 4 AA3 6 SER A 239 LEU A 247 -1 O ASP A 242 N THR A 174 SHEET 5 AA3 6 PHE A 305 TYR A 312 -1 O SER A 310 N VAL A 241 SHEET 6 AA3 6 ILE A 299 ASN A 302 -1 N ILE A 299 O LYS A 307 LINK C1 GLC B 1 O1 GLC B 2 1555 1555 1.44 CRYST1 121.295 121.295 156.056 90.00 90.00 90.00 I 41 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008244 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008244 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006408 0.00000