data_5ZAU # _entry.id 5ZAU # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.370 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5ZAU pdb_00005zau 10.2210/pdb5zau/pdb WWPDB D_1300006735 ? ? BMRB 36164 ? ? # _pdbx_database_related.db_name BMRB _pdbx_database_related.details 'Complex of the human FYN SH3 and monobody binder' _pdbx_database_related.db_id 36164 _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.entry_id 5ZAU _pdbx_database_status.recvd_initial_deposition_date 2018-02-09 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data REL # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Reddy, P.P.' 1 ? 'Gulyani, A.' 2 ? 'Das, R.' 3 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Elife _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2050-084X _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 9 _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'A Fyn biosensor reveals pulsatile, spatially localized kinase activity and signaling crosstalk in live mammalian cells.' _citation.year 2020 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.7554/eLife.50571 _citation.pdbx_database_id_PubMed 32017701 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Mukherjee, A.' 1 0000-0002-3112-583X primary 'Singh, R.' 2 0000-0001-7388-225X primary 'Udayan, S.' 3 0000-0003-3778-9968 primary 'Biswas, S.' 4 0000-0003-2515-1940 primary 'Reddy, P.P.' 5 ? primary 'Manmadhan, S.' 6 ? primary 'George, G.' 7 ? primary 'Kumar, S.' 8 ? primary 'Das, R.' 9 0000-0001-5114-6817 primary 'Rao, B.M.' 10 0000-0001-5695-8953 primary 'Gulyani, A.' 11 0000-0003-4130-4257 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Tyrosine-protein kinase Fyn' 6524.066 1 2.7.10.2 ? 'UNP residues 85-141' ? 2 polymer man 'Monobody Binder' 7370.672 1 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Proto-oncogene Syn,Proto-oncogene c-Fyn,Src-like kinase,SLK,p59-Fyn' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no TLFVALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPV TLFVALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPV A ? 2 'polypeptide(L)' no no MATVKFKYKGEEKQVDISKIVFVTRYGKQIFFRYDLGGGKPGFGVVSEKDAPKELLQKLEKQKK MATVKFKYKGEEKQVDISKIVFVTRYGKQIFFRYDLGGGKPGFGVVSEKDAPKELLQKLEKQKK B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 THR n 1 2 LEU n 1 3 PHE n 1 4 VAL n 1 5 ALA n 1 6 LEU n 1 7 TYR n 1 8 ASP n 1 9 TYR n 1 10 GLU n 1 11 ALA n 1 12 ARG n 1 13 THR n 1 14 GLU n 1 15 ASP n 1 16 ASP n 1 17 LEU n 1 18 SER n 1 19 PHE n 1 20 HIS n 1 21 LYS n 1 22 GLY n 1 23 GLU n 1 24 LYS n 1 25 PHE n 1 26 GLN n 1 27 ILE n 1 28 LEU n 1 29 ASN n 1 30 SER n 1 31 SER n 1 32 GLU n 1 33 GLY n 1 34 ASP n 1 35 TRP n 1 36 TRP n 1 37 GLU n 1 38 ALA n 1 39 ARG n 1 40 SER n 1 41 LEU n 1 42 THR n 1 43 THR n 1 44 GLY n 1 45 GLU n 1 46 THR n 1 47 GLY n 1 48 TYR n 1 49 ILE n 1 50 PRO n 1 51 SER n 1 52 ASN n 1 53 TYR n 1 54 VAL n 1 55 ALA n 1 56 PRO n 1 57 VAL n 2 1 MET n 2 2 ALA n 2 3 THR n 2 4 VAL n 2 5 LYS n 2 6 PHE n 2 7 LYS n 2 8 TYR n 2 9 LYS n 2 10 GLY n 2 11 GLU n 2 12 GLU n 2 13 LYS n 2 14 GLN n 2 15 VAL n 2 16 ASP n 2 17 ILE n 2 18 SER n 2 19 LYS n 2 20 ILE n 2 21 VAL n 2 22 PHE n 2 23 VAL n 2 24 THR n 2 25 ARG n 2 26 TYR n 2 27 GLY n 2 28 LYS n 2 29 GLN n 2 30 ILE n 2 31 PHE n 2 32 PHE n 2 33 ARG n 2 34 TYR n 2 35 ASP n 2 36 LEU n 2 37 GLY n 2 38 GLY n 2 39 GLY n 2 40 LYS n 2 41 PRO n 2 42 GLY n 2 43 PHE n 2 44 GLY n 2 45 VAL n 2 46 VAL n 2 47 SER n 2 48 GLU n 2 49 LYS n 2 50 ASP n 2 51 ALA n 2 52 PRO n 2 53 LYS n 2 54 GLU n 2 55 LEU n 2 56 LEU n 2 57 GLN n 2 58 LYS n 2 59 LEU n 2 60 GLU n 2 61 LYS n 2 62 GLN n 2 63 LYS n 2 64 LYS n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample 'Biological sequence' 1 57 Human ? FYN ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 2 1 sample 'Biological sequence' 1 64 ? ? ? ? ? ? ? ? ? 'Sulfolobus solfataricus' 2287 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP FYN_HUMAN P06241 ? 1 TLFVALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPV 85 2 PDB 5ZAU 5ZAU ? 2 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 5ZAU A 1 ? 57 ? P06241 85 ? 141 ? 85 141 2 2 5ZAU B 1 ? 64 ? 5ZAU 1 ? 64 ? 1 64 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 1 1 '2D 1H-15N HSQC' 1 isotropic 2 1 2 '2D 1H-15N HSQC' 1 isotropic 3 1 2 '3D CBCA(CO)NH' 1 isotropic 4 1 2 '3D HNCACB' 1 isotropic 5 1 3 '3D NOESY HSQC' 1 isotropic 6 1 4 '2D 1H-15N HSQC' 1 isotropic 7 1 5 '2D 1H-15N HSQC' 1 isotropic # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure_units atm _pdbx_nmr_exptl_sample_conditions.pressure 1 _pdbx_nmr_exptl_sample_conditions.pH 8 _pdbx_nmr_exptl_sample_conditions.ionic_strength 300 _pdbx_nmr_exptl_sample_conditions.details ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_err ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_units mM _pdbx_nmr_exptl_sample_conditions.label conditions_1 _pdbx_nmr_exptl_sample_conditions.pH_err ? _pdbx_nmr_exptl_sample_conditions.pH_units pH _pdbx_nmr_exptl_sample_conditions.pressure_err ? _pdbx_nmr_exptl_sample_conditions.temperature_err ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system _pdbx_nmr_sample_details.label _pdbx_nmr_sample_details.type _pdbx_nmr_sample_details.details 1 '1 mM [U-99% 13C; U-99% 15N] FYN SH3 domain, 90% H2O/10% D2O' '90% H2O/10% D2O' 15,13C_FYN solution ? 2 '1 mM [U-99% 13C; U-99% 15N] Monobody Binder, 90% H2O/10% D2O' '90% H2O/10% D2O' 15,13C_F29 solution ? 3 '1 mM [U-99% 15N; U-98% 2H] FYN SH3 domain, 1.5 mM Unlabeled Monobody Binder, 90% H2O/10% D2O' '90% H2O/10% D2O' Complex solution ? 4 '0.2 mM [U-99% 15N] FYN SH3 domain, 1 mM Unlabeled Monobody Binder, 90% H2O/10% D2O' '90% H2O/10% D2O' 15N_FYN_F29 solution ? 5 '0.2 mM [U-99% 15N] Monobody Binder, 1 mM Unlabeled FYN SH3 domain, 90% H2O/10% D2O' '90% H2O/10% D2O' 15N_F29_FYN solution ? # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model 'AVANCE III' _pdbx_nmr_spectrometer.type ? _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 800 _pdbx_nmr_spectrometer.details ? # _pdbx_nmr_refine.entry_id 5ZAU _pdbx_nmr_refine.method 'torsion angle dynamics' _pdbx_nmr_refine.details 'Docking with NMR restraints' _pdbx_nmr_refine.software_ordinal 4 # _pdbx_nmr_ensemble.entry_id 5ZAU _pdbx_nmr_ensemble.conformers_calculated_total_number 200 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.representative_conformer ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 5ZAU _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.ordinal _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors 1 processing NMRPipe ? 'Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax' 2 'data analysis' Sparky ? Goddard 3 'chemical shift assignment' PINE ? 'Bahrami, Markley, Assadi, and Eghbalnia' 4 'structure calculation' HADDOCK ? Bonvin # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5ZAU _exptl.crystals_number ? _exptl.details ? _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 5ZAU _struct.title 'Complex of the human FYN SH3 and monobody binder' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5ZAU _struct_keywords.text 'Complex, SIGNALING PROTEIN' _struct_keywords.pdbx_keywords 'SIGNALING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id AA1 _struct_conf.beg_label_comp_id PRO _struct_conf.beg_label_asym_id B _struct_conf.beg_label_seq_id 52 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id GLU _struct_conf.end_label_asym_id B _struct_conf.end_label_seq_id 60 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id PRO _struct_conf.beg_auth_asym_id B _struct_conf.beg_auth_seq_id 52 _struct_conf.end_auth_comp_id GLU _struct_conf.end_auth_asym_id B _struct_conf.end_auth_seq_id 60 _struct_conf.pdbx_PDB_helix_class 1 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 9 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 5 ? AA2 ? 2 ? AA3 ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA1 4 5 ? anti-parallel AA2 1 2 ? anti-parallel AA3 1 2 ? anti-parallel AA3 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 THR A 46 ? ILE A 49 ? THR A 130 ILE A 133 AA1 2 TRP A 36 ? SER A 40 ? TRP A 120 SER A 124 AA1 3 LYS A 24 ? ASN A 29 ? LYS A 108 ASN A 113 AA1 4 LEU A 2 ? ALA A 5 ? LEU A 86 ALA A 89 AA1 5 VAL A 54 ? PRO A 56 ? VAL A 138 PRO A 140 AA2 1 THR B 3 ? TYR B 8 ? THR B 3 TYR B 8 AA2 2 GLU B 11 ? ASP B 16 ? GLU B 11 ASP B 16 AA3 1 ILE B 20 ? ARG B 25 ? ILE B 20 ARG B 25 AA3 2 GLN B 29 ? TYR B 34 ? GLN B 29 TYR B 34 AA3 3 GLY B 42 ? SER B 47 ? GLY B 42 SER B 47 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 O ILE A 49 ? O ILE A 133 N TRP A 36 ? N TRP A 120 AA1 2 3 O ARG A 39 ? O ARG A 123 N GLN A 26 ? N GLN A 110 AA1 3 4 O PHE A 25 ? O PHE A 109 N PHE A 3 ? N PHE A 87 AA1 4 5 N VAL A 4 ? N VAL A 88 O ALA A 55 ? O ALA A 139 AA2 1 2 N PHE B 6 ? N PHE B 6 O LYS B 13 ? O LYS B 13 AA3 1 2 N THR B 24 ? N THR B 24 O PHE B 31 ? O PHE B 31 AA3 2 3 N ILE B 30 ? N ILE B 30 O VAL B 46 ? O VAL B 46 # _atom_sites.entry_id 5ZAU _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 THR 1 85 85 THR THR A . n A 1 2 LEU 2 86 86 LEU LEU A . n A 1 3 PHE 3 87 87 PHE PHE A . n A 1 4 VAL 4 88 88 VAL VAL A . n A 1 5 ALA 5 89 89 ALA ALA A . n A 1 6 LEU 6 90 90 LEU LEU A . n A 1 7 TYR 7 91 91 TYR TYR A . n A 1 8 ASP 8 92 92 ASP ASP A . n A 1 9 TYR 9 93 93 TYR TYR A . n A 1 10 GLU 10 94 94 GLU GLU A . n A 1 11 ALA 11 95 95 ALA ALA A . n A 1 12 ARG 12 96 96 ARG ARG A . n A 1 13 THR 13 97 97 THR THR A . n A 1 14 GLU 14 98 98 GLU GLU A . n A 1 15 ASP 15 99 99 ASP ASP A . n A 1 16 ASP 16 100 100 ASP ASP A . n A 1 17 LEU 17 101 101 LEU LEU A . n A 1 18 SER 18 102 102 SER SER A . n A 1 19 PHE 19 103 103 PHE PHE A . n A 1 20 HIS 20 104 104 HIS HIS A . n A 1 21 LYS 21 105 105 LYS LYS A . n A 1 22 GLY 22 106 106 GLY GLY A . n A 1 23 GLU 23 107 107 GLU GLU A . n A 1 24 LYS 24 108 108 LYS LYS A . n A 1 25 PHE 25 109 109 PHE PHE A . n A 1 26 GLN 26 110 110 GLN GLN A . n A 1 27 ILE 27 111 111 ILE ILE A . n A 1 28 LEU 28 112 112 LEU LEU A . n A 1 29 ASN 29 113 113 ASN ASN A . n A 1 30 SER 30 114 114 SER SER A . n A 1 31 SER 31 115 115 SER SER A . n A 1 32 GLU 32 116 116 GLU GLU A . n A 1 33 GLY 33 117 117 GLY GLY A . n A 1 34 ASP 34 118 118 ASP ASP A . n A 1 35 TRP 35 119 119 TRP TRP A . n A 1 36 TRP 36 120 120 TRP TRP A . n A 1 37 GLU 37 121 121 GLU GLU A . n A 1 38 ALA 38 122 122 ALA ALA A . n A 1 39 ARG 39 123 123 ARG ARG A . n A 1 40 SER 40 124 124 SER SER A . n A 1 41 LEU 41 125 125 LEU LEU A . n A 1 42 THR 42 126 126 THR THR A . n A 1 43 THR 43 127 127 THR THR A . n A 1 44 GLY 44 128 128 GLY GLY A . n A 1 45 GLU 45 129 129 GLU GLU A . n A 1 46 THR 46 130 130 THR THR A . n A 1 47 GLY 47 131 131 GLY GLY A . n A 1 48 TYR 48 132 132 TYR TYR A . n A 1 49 ILE 49 133 133 ILE ILE A . n A 1 50 PRO 50 134 134 PRO PRO A . n A 1 51 SER 51 135 135 SER SER A . n A 1 52 ASN 52 136 136 ASN ASN A . n A 1 53 TYR 53 137 137 TYR TYR A . n A 1 54 VAL 54 138 138 VAL VAL A . n A 1 55 ALA 55 139 139 ALA ALA A . n A 1 56 PRO 56 140 140 PRO PRO A . n A 1 57 VAL 57 141 141 VAL VAL A . n B 2 1 MET 1 1 1 MET MET B . n B 2 2 ALA 2 2 2 ALA ALA B . n B 2 3 THR 3 3 3 THR THR B . n B 2 4 VAL 4 4 4 VAL VAL B . n B 2 5 LYS 5 5 5 LYS LYS B . n B 2 6 PHE 6 6 6 PHE PHE B . n B 2 7 LYS 7 7 7 LYS LYS B . n B 2 8 TYR 8 8 8 TYR TYR B . n B 2 9 LYS 9 9 9 LYS LYS B . n B 2 10 GLY 10 10 10 GLY GLY B . n B 2 11 GLU 11 11 11 GLU GLU B . n B 2 12 GLU 12 12 12 GLU GLU B . n B 2 13 LYS 13 13 13 LYS LYS B . n B 2 14 GLN 14 14 14 GLN GLN B . n B 2 15 VAL 15 15 15 VAL VAL B . n B 2 16 ASP 16 16 16 ASP ASP B . n B 2 17 ILE 17 17 17 ILE ILE B . n B 2 18 SER 18 18 18 SER SER B . n B 2 19 LYS 19 19 19 LYS LYS B . n B 2 20 ILE 20 20 20 ILE ILE B . n B 2 21 VAL 21 21 21 VAL VAL B . n B 2 22 PHE 22 22 22 PHE PHE B . n B 2 23 VAL 23 23 23 VAL VAL B . n B 2 24 THR 24 24 24 THR THR B . n B 2 25 ARG 25 25 25 ARG ARG B . n B 2 26 TYR 26 26 26 TYR TYR B . n B 2 27 GLY 27 27 27 GLY GLY B . n B 2 28 LYS 28 28 28 LYS LYS B . n B 2 29 GLN 29 29 29 GLN GLN B . n B 2 30 ILE 30 30 30 ILE ILE B . n B 2 31 PHE 31 31 31 PHE PHE B . n B 2 32 PHE 32 32 32 PHE PHE B . n B 2 33 ARG 33 33 33 ARG ARG B . n B 2 34 TYR 34 34 34 TYR TYR B . n B 2 35 ASP 35 35 35 ASP ASP B . n B 2 36 LEU 36 36 36 LEU LEU B . n B 2 37 GLY 37 37 37 GLY GLY B . n B 2 38 GLY 38 38 38 GLY GLY B . n B 2 39 GLY 39 39 39 GLY GLY B . n B 2 40 LYS 40 40 40 LYS LYS B . n B 2 41 PRO 41 41 41 PRO PRO B . n B 2 42 GLY 42 42 42 GLY GLY B . n B 2 43 PHE 43 43 43 PHE PHE B . n B 2 44 GLY 44 44 44 GLY GLY B . n B 2 45 VAL 45 45 45 VAL VAL B . n B 2 46 VAL 46 46 46 VAL VAL B . n B 2 47 SER 47 47 47 SER SER B . n B 2 48 GLU 48 48 48 GLU GLU B . n B 2 49 LYS 49 49 49 LYS LYS B . n B 2 50 ASP 50 50 50 ASP ASP B . n B 2 51 ALA 51 51 51 ALA ALA B . n B 2 52 PRO 52 52 52 PRO PRO B . n B 2 53 LYS 53 53 53 LYS LYS B . n B 2 54 GLU 54 54 54 GLU GLU B . n B 2 55 LEU 55 55 55 LEU LEU B . n B 2 56 LEU 56 56 56 LEU LEU B . n B 2 57 GLN 57 57 57 GLN GLN B . n B 2 58 LYS 58 58 58 LYS LYS B . n B 2 59 LEU 59 59 59 LEU LEU B . n B 2 60 GLU 60 60 60 GLU GLU B . n B 2 61 LYS 61 61 61 LYS LYS B . n B 2 62 GLN 62 62 62 GLN GLN B . n B 2 63 LYS 63 63 63 LYS LYS B . n B 2 64 LYS 64 64 64 LYS LYS B . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1510 ? 1 MORE -8 ? 1 'SSA (A^2)' 7200 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2019-09-11 2 'Structure model' 1 1 2020-03-25 3 'Structure model' 1 2 2023-06-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 3 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_database_status # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_CSD' 4 2 'Structure model' '_citation.journal_id_ISSN' 5 2 'Structure model' '_citation.journal_volume' 6 2 'Structure model' '_citation.pdbx_database_id_DOI' 7 2 'Structure model' '_citation.pdbx_database_id_PubMed' 8 2 'Structure model' '_citation.title' 9 2 'Structure model' '_citation.year' 10 3 'Structure model' '_database_2.pdbx_DOI' 11 3 'Structure model' '_database_2.pdbx_database_accession' 12 3 'Structure model' '_pdbx_database_status.status_code_nmr_data' # loop_ _pdbx_nmr_exptl_sample.solution_id _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling 1 'FYN SH3 domain' 1 ? mM '[U-99% 13C; U-99% 15N]' 2 'Monobody Binder' 1 ? mM '[U-99% 13C; U-99% 15N]' 3 'FYN SH3 domain' 1 ? mM '[U-99% 15N; U-98% 2H]' 3 'Monobody Binder' 1.5 ? mM Unlabeled 4 'FYN SH3 domain' 0.2 ? mM '[U-99% 15N]' 4 'Monobody Binder' 1 ? mM Unlabeled 5 'Monobody Binder' 0.2 ? mM '[U-99% 15N]' 5 'FYN SH3 domain' 1 ? mM Unlabeled # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 OD1 A ASP 118 ? ? HZ1 B LYS 9 ? ? 1.54 2 1 OE2 A GLU 107 ? ? HG1 A THR 126 ? ? 1.58 3 2 OE1 B GLU 11 ? ? HZ1 B LYS 13 ? ? 1.59 4 3 OD1 A ASP 99 ? ? HH12 B ARG 33 ? ? 1.58 5 3 HH22 A ARG 96 ? ? OXT B LYS 64 ? ? 1.60 6 4 HZ3 B LYS 5 ? ? OE1 B GLU 12 ? ? 1.58 7 4 OD1 A ASP 99 ? ? HH12 B ARG 33 ? ? 1.60 8 4 OE1 B GLU 11 ? ? HZ3 B LYS 13 ? ? 1.60 9 5 HZ3 B LYS 5 ? ? OE2 B GLU 12 ? ? 1.57 10 7 OE2 B GLU 54 ? ? HZ1 B LYS 58 ? ? 1.59 11 8 OD1 A ASP 99 ? ? HH12 B ARG 33 ? ? 1.57 12 8 OD1 A ASP 118 ? ? HZ1 B LYS 9 ? ? 1.57 13 10 OE1 B GLU 54 ? ? HZ3 B LYS 58 ? ? 1.59 14 11 OD1 A ASP 99 ? ? HH12 B ARG 33 ? ? 1.53 15 11 HZ3 B LYS 7 ? ? OE1 B GLU 12 ? ? 1.58 16 12 HZ3 B LYS 7 ? ? OE2 B GLU 12 ? ? 1.58 17 12 OD1 A ASP 118 ? ? HZ1 B LYS 9 ? ? 1.59 18 14 OD1 A ASP 99 ? ? HH12 B ARG 33 ? ? 1.56 19 14 OE2 B GLU 54 ? ? HZ1 B LYS 58 ? ? 1.56 20 15 OE1 B GLU 11 ? ? HZ1 B LYS 13 ? ? 1.58 21 15 HZ1 B LYS 7 ? ? OE2 B GLU 12 ? ? 1.59 22 16 OD1 A ASP 99 ? ? HH12 B ARG 33 ? ? 1.57 23 16 HZ3 B LYS 7 ? ? OE2 B GLU 12 ? ? 1.57 24 17 OD1 A ASP 118 ? ? HZ2 B LYS 9 ? ? 1.56 25 17 HZ3 B LYS 5 ? ? OE2 B GLU 12 ? ? 1.59 26 18 HH11 B ARG 25 ? ? OE2 B GLU 48 ? ? 1.57 27 18 HH22 B ARG 25 ? ? OE2 B GLU 60 ? ? 1.58 28 18 OD1 A ASP 118 ? ? HZ1 B LYS 9 ? ? 1.58 29 19 OE2 A GLU 107 ? ? HG1 A THR 126 ? ? 1.58 30 19 OE1 B GLU 11 ? ? HZ1 B LYS 13 ? ? 1.59 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 TYR B 8 ? ? -63.77 92.88 2 1 LYS B 28 ? ? -135.17 -41.69 3 2 THR A 97 ? ? -124.36 -162.25 4 2 SER A 115 ? ? -86.82 47.21 5 2 VAL B 21 ? ? -83.76 -73.12 6 2 LYS B 40 ? ? -160.49 90.45 7 3 THR A 97 ? ? -129.81 -165.09 8 3 LEU A 112 ? ? -102.70 -62.32 9 3 VAL B 21 ? ? -81.26 -72.86 10 3 LYS B 28 ? ? -134.17 -38.44 11 3 LYS B 40 ? ? -163.02 99.28 12 4 THR A 126 ? ? -95.06 -66.36 13 4 LYS B 28 ? ? -138.56 -51.97 14 4 ASP B 50 ? ? -96.88 52.04 15 4 LYS B 63 ? ? 64.77 65.01 16 5 VAL B 21 ? ? -77.92 -71.62 17 5 LYS B 28 ? ? -148.12 -50.65 18 5 LYS B 40 ? ? -159.93 89.90 19 6 THR A 97 ? ? -120.75 -160.86 20 6 THR A 127 ? ? -104.24 -61.14 21 6 LYS B 28 ? ? -152.64 -57.82 22 6 LYS B 40 ? ? -163.77 114.70 23 6 GLU B 48 ? ? -77.70 41.29 24 6 LYS B 49 ? ? -139.27 -62.26 25 6 LYS B 63 ? ? 66.95 75.88 26 7 THR A 97 ? ? -129.26 -166.52 27 7 VAL B 21 ? ? -77.92 -74.79 28 7 LYS B 28 ? ? -145.24 -52.79 29 7 LYS B 63 ? ? 67.58 97.38 30 8 ASP A 118 ? ? -122.76 -69.00 31 8 THR A 127 ? ? -94.58 -67.17 32 8 TYR B 8 ? ? -67.77 96.38 33 8 LYS B 28 ? ? -157.52 -53.04 34 8 LYS B 49 ? ? -137.69 -50.54 35 8 LYS B 63 ? ? 64.00 62.52 36 9 VAL B 21 ? ? -62.19 -78.69 37 9 LYS B 28 ? ? -128.02 -52.27 38 9 LYS B 40 ? ? -160.34 85.47 39 10 LYS B 28 ? ? -134.12 -47.41 40 10 LYS B 49 ? ? -122.92 -62.79 41 10 ASP B 50 ? ? -86.35 36.33 42 10 LYS B 63 ? ? 62.31 79.48 43 11 THR A 97 ? ? -121.89 -160.83 44 11 THR A 127 ? ? -104.35 -63.70 45 11 VAL B 21 ? ? -76.65 -75.42 46 11 ASP B 50 ? ? -133.26 -53.30 47 12 LYS B 7 ? ? -110.00 77.70 48 12 TYR B 8 ? ? -69.58 99.92 49 12 LYS B 28 ? ? -140.90 -53.73 50 12 LYS B 40 ? ? -170.13 111.07 51 12 LYS B 49 ? ? -166.24 -50.02 52 13 THR A 97 ? ? -122.89 -167.59 53 13 LYS B 7 ? ? -117.37 63.25 54 13 LYS B 28 ? ? -155.33 -56.49 55 13 LYS B 63 ? ? 63.06 79.98 56 14 THR A 97 ? ? -129.37 -164.11 57 14 VAL B 21 ? ? -75.59 -77.37 58 14 LYS B 28 ? ? -146.38 -54.60 59 14 LYS B 63 ? ? 74.24 51.92 60 15 THR A 126 ? ? -95.10 -61.09 61 15 LYS B 28 ? ? -139.50 -40.29 62 15 ASP B 50 ? ? -90.92 45.37 63 16 THR A 97 ? ? -124.77 -159.79 64 16 LEU A 112 ? ? -108.64 -67.09 65 16 ASP A 118 ? ? -133.05 -66.11 66 16 VAL B 21 ? ? -65.14 -78.68 67 16 LYS B 28 ? ? -134.12 -42.25 68 16 LYS B 49 ? ? -136.89 -39.27 69 16 LYS B 63 ? ? 60.27 81.40 70 17 ARG A 96 ? ? -136.81 -41.63 71 17 VAL B 21 ? ? -76.39 -72.83 72 17 LYS B 28 ? ? -146.86 -51.87 73 17 LYS B 63 ? ? 63.62 77.73 74 18 GLU A 116 ? ? -84.29 -109.28 75 18 VAL B 21 ? ? -80.41 -88.95 76 18 LYS B 28 ? ? -138.83 -59.70 77 19 THR A 97 ? ? -129.60 -160.04 78 19 GLU A 116 ? ? -87.72 -91.55 79 19 LYS B 28 ? ? -144.38 -51.34 80 19 LYS B 49 ? ? -132.22 -42.77 81 19 ASP B 50 ? ? -97.21 34.23 82 19 LYS B 63 ? ? 72.04 54.64 83 20 THR A 97 ? ? -117.48 -168.51 84 20 THR A 126 ? ? -91.12 -62.77 85 20 VAL B 21 ? ? -73.78 -70.32 86 20 LYS B 28 ? ? -140.00 -60.92 # _pdbx_audit_support.funding_organization TIFR _pdbx_audit_support.country India _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'native gel electrophoresis' _pdbx_struct_assembly_auth_evidence.details ? #