HEADER TRANSFERASE 09-FEB-18 5ZAX TITLE CRYSTAL STRUCTURE OF THYMIDYLATE KINASE IN COMPLEX WITH ADP, TDP AND TITLE 2 TMP FROM THERMUS THERMOPHILUS HB8 COMPND MOL_ID: 1; COMPND 2 MOLECULE: THYMIDYLATE KINASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: DTMP KINASE; COMPND 5 EC: 2.7.4.9; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS HB8; SOURCE 3 ORGANISM_TAXID: 300852; SOURCE 4 STRAIN: HB8 / ATCC 27634 / DSM 579; SOURCE 5 GENE: TMK, TTHA1607; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 866768 KEYWDS NMP KINASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.K.CHAUDHARY,J.JEYAKANTHAN,K.SEKAR REVDAT 2 22-NOV-23 5ZAX 1 LINK REVDAT 1 19-DEC-18 5ZAX 0 JRNL AUTH S.K.CHAUDHARY,Y.IYYAPPAN,M.ELAYAPPAN,J.JEYAKANTHAN,K.SEKAR JRNL TITL INSIGHTS INTO PRODUCT RELEASE DYNAMICS THROUGH STRUCTURAL JRNL TITL 2 ANALYSES OF THYMIDYLATE KINASE. JRNL REF INT. J. BIOL. MACROMOL. V. 123 637 2018 JRNL REFN ISSN 1879-0003 JRNL PMID 30447376 JRNL DOI 10.1016/J.IJBIOMAC.2018.11.025 REMARK 2 REMARK 2 RESOLUTION. 2.36 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0189 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.36 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 18.54 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 13923 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.249 REMARK 3 R VALUE (WORKING SET) : 0.245 REMARK 3 FREE R VALUE : 0.324 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 688 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.36 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.42 REMARK 3 REFLECTION IN BIN (WORKING SET) : 943 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.71 REMARK 3 BIN R VALUE (WORKING SET) : 0.3700 REMARK 3 BIN FREE R VALUE SET COUNT : 61 REMARK 3 BIN FREE R VALUE : 0.4730 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2907 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 85 REMARK 3 SOLVENT ATOMS : 58 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.87 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.23000 REMARK 3 B22 (A**2) : -0.86000 REMARK 3 B33 (A**2) : -0.36000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.787 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.366 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.892 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.809 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3042 ; 0.008 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2979 ; 0.000 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4137 ; 1.349 ; 2.046 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6843 ; 3.604 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 373 ; 5.180 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 125 ;32.163 ;21.360 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 492 ;14.608 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 39 ;16.572 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 469 ; 0.063 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3301 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 641 ; 0.005 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1501 ; 0.791 ; 1.965 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1501 ; 0.789 ; 1.965 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1869 ; 1.439 ; 2.931 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 5ZAX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 14-FEB-18. REMARK 100 THE DEPOSITION ID IS D_1300006770. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-JUL-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU ULTRAX 18 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54179 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14849 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.360 REMARK 200 RESOLUTION RANGE LOW (A) : 18.540 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.13500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.36 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.46 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.45300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5X7J REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M MGCL2.6H2O, 0.1M TRIS REMARK 280 HYDROCHLORIDE, 30% PEG 4000, MICROBATCH, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.70400 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 76.16450 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 23.82900 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 76.16450 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.70400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 23.82900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5150 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15990 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -137.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ARG A 139 REMARK 465 ARG A 140 REMARK 465 VAL A 141 REMARK 465 ARG A 142 REMARK 465 ARG A 143 REMARK 465 PRO A 144 REMARK 465 ASP A 145 REMARK 465 MET B 1 REMARK 465 ARG B 140 REMARK 465 VAL B 141 REMARK 465 ARG B 142 REMARK 465 ARG B 143 REMARK 465 PRO B 144 REMARK 465 ASP B 145 REMARK 465 ARG B 146 REMARK 465 LEU B 147 REMARK 465 GLU B 148 REMARK 465 GLY B 149 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 150 CG CD1 CD2 REMARK 470 PRO A 198 O REMARK 470 ARG B 21 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 117 O REMARK 470 LEU B 150 CG CD1 CD2 REMARK 470 GLU B 183 CG CD OE1 OE2 REMARK 470 ARG B 187 CD NE CZ NH1 NH2 REMARK 470 ARG B 194 CG CD NE CZ NH1 NH2 REMARK 470 PRO B 198 O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 76 -58.91 -121.57 REMARK 500 ARG A 91 138.31 79.56 REMARK 500 TYR A 92 -153.33 -146.53 REMARK 500 LEU A 197 -77.06 -95.91 REMARK 500 VAL B 76 -59.82 -122.94 REMARK 500 ARG B 91 138.56 76.66 REMARK 500 TYR B 92 -139.09 -151.21 REMARK 500 GLU B 169 73.90 -120.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 7 OG1 REMARK 620 2 ASP A 94 OD2 126.5 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 206 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 17 OG1 REMARK 620 2 ADP A 201 O2B 71.8 REMARK 620 3 HOH A 301 O 163.8 97.8 REMARK 620 4 HOH A 307 O 83.6 152.2 103.0 REMARK 620 5 HOH A 313 O 79.8 75.9 85.7 87.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 203 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR A 62 OH REMARK 620 2 SER A 66 OG 82.6 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 205 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU A 165 O REMARK 620 2 GLU A 169 OE2 112.4 REMARK 620 3 HOH A 315 O 123.0 120.7 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 203 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PHE B 65 O REMARK 620 2 ASP B 68 OD2 102.9 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 204 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU B 165 O REMARK 620 2 GLU B 169 OE2 120.7 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADP A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TYD A 208 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TMP B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 207 DBREF 5ZAX A 1 198 UNP Q5SHX3 KTHY_THET8 1 198 DBREF 5ZAX B 1 198 UNP Q5SHX3 KTHY_THET8 1 198 SEQRES 1 A 198 MET PRO GLY LEU PHE LEU THR LEU GLU GLY LEU ASP GLY SEQRES 2 A 198 SER GLY LYS THR THR GLN ALA ARG ARG LEU ALA ALA PHE SEQRES 3 A 198 LEU GLU ALA GLN GLY ARG PRO VAL LEU LEU THR ARG GLU SEQRES 4 A 198 PRO GLY GLY GLY LEU PRO GLU VAL ARG SER LEU LEU LEU SEQRES 5 A 198 THR GLN GLU LEU SER PRO GLU ALA GLU TYR LEU LEU PHE SEQRES 6 A 198 SER ALA ASP ARG ALA GLU HIS VAL ARG LYS VAL ILE LEU SEQRES 7 A 198 PRO GLY LEU ALA ALA GLY LYS VAL VAL ILE SER ASP ARG SEQRES 8 A 198 TYR LEU ASP SER SER LEU ALA TYR GLN GLY TYR GLY ARG SEQRES 9 A 198 GLY LEU PRO LEU PRO TRP LEU ARG GLU VAL ALA ARG GLU SEQRES 10 A 198 ALA THR ARG GLY LEU LYS PRO ARG LEU THR PHE LEU LEU SEQRES 11 A 198 ASP LEU PRO PRO GLU ALA ALA LEU ARG ARG VAL ARG ARG SEQRES 12 A 198 PRO ASP ARG LEU GLU GLY LEU GLY LEU GLU PHE PHE ARG SEQRES 13 A 198 ARG VAL ARG GLU GLY TYR LEU ALA LEU ALA ARG ALA GLU SEQRES 14 A 198 PRO GLY ARG PHE VAL VAL LEU ASP ALA THR LEU PRO GLU SEQRES 15 A 198 GLU GLU ILE ALA ARG ALA ILE GLN ALA HIS LEU ARG PRO SEQRES 16 A 198 LEU LEU PRO SEQRES 1 B 198 MET PRO GLY LEU PHE LEU THR LEU GLU GLY LEU ASP GLY SEQRES 2 B 198 SER GLY LYS THR THR GLN ALA ARG ARG LEU ALA ALA PHE SEQRES 3 B 198 LEU GLU ALA GLN GLY ARG PRO VAL LEU LEU THR ARG GLU SEQRES 4 B 198 PRO GLY GLY GLY LEU PRO GLU VAL ARG SER LEU LEU LEU SEQRES 5 B 198 THR GLN GLU LEU SER PRO GLU ALA GLU TYR LEU LEU PHE SEQRES 6 B 198 SER ALA ASP ARG ALA GLU HIS VAL ARG LYS VAL ILE LEU SEQRES 7 B 198 PRO GLY LEU ALA ALA GLY LYS VAL VAL ILE SER ASP ARG SEQRES 8 B 198 TYR LEU ASP SER SER LEU ALA TYR GLN GLY TYR GLY ARG SEQRES 9 B 198 GLY LEU PRO LEU PRO TRP LEU ARG GLU VAL ALA ARG GLU SEQRES 10 B 198 ALA THR ARG GLY LEU LYS PRO ARG LEU THR PHE LEU LEU SEQRES 11 B 198 ASP LEU PRO PRO GLU ALA ALA LEU ARG ARG VAL ARG ARG SEQRES 12 B 198 PRO ASP ARG LEU GLU GLY LEU GLY LEU GLU PHE PHE ARG SEQRES 13 B 198 ARG VAL ARG GLU GLY TYR LEU ALA LEU ALA ARG ALA GLU SEQRES 14 B 198 PRO GLY ARG PHE VAL VAL LEU ASP ALA THR LEU PRO GLU SEQRES 15 B 198 GLU GLU ILE ALA ARG ALA ILE GLN ALA HIS LEU ARG PRO SEQRES 16 B 198 LEU LEU PRO HET ADP A 201 27 HET MG A 202 1 HET MG A 203 1 HET MG A 204 1 HET MG A 205 1 HET MG A 206 1 HET CL A 207 1 HET TYD A 208 25 HET TMP B 201 21 HET MG B 202 1 HET MG B 203 1 HET MG B 204 1 HET CL B 205 1 HET CL B 206 1 HET CL B 207 1 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM CL CHLORIDE ION HETNAM TYD THYMIDINE-5'-DIPHOSPHATE HETNAM TMP THYMIDINE-5'-PHOSPHATE FORMUL 3 ADP C10 H15 N5 O10 P2 FORMUL 4 MG 8(MG 2+) FORMUL 9 CL 4(CL 1-) FORMUL 10 TYD C10 H16 N2 O11 P2 FORMUL 11 TMP C10 H15 N2 O8 P FORMUL 18 HOH *58(H2 O) HELIX 1 AA1 GLY A 15 GLN A 30 1 16 HELIX 2 AA2 GLU A 46 LEU A 52 1 7 HELIX 3 AA3 SER A 57 VAL A 76 1 20 HELIX 4 AA4 VAL A 76 ALA A 83 1 8 HELIX 5 AA5 TYR A 92 GLN A 100 1 9 HELIX 6 AA6 PRO A 107 ARG A 120 1 14 HELIX 7 AA7 PRO A 133 ALA A 137 5 5 HELIX 8 AA8 GLY A 151 GLU A 169 1 19 HELIX 9 AA9 PRO A 181 ARG A 194 1 14 HELIX 10 AB1 PRO A 195 LEU A 197 5 3 HELIX 11 AB2 GLY B 15 GLN B 30 1 16 HELIX 12 AB3 LEU B 44 THR B 53 1 10 HELIX 13 AB4 SER B 57 VAL B 76 1 20 HELIX 14 AB5 VAL B 76 ALA B 83 1 8 HELIX 15 AB6 TYR B 92 GLN B 100 1 9 HELIX 16 AB7 PRO B 107 GLU B 117 1 11 HELIX 17 AB8 PRO B 133 ALA B 137 5 5 HELIX 18 AB9 LEU B 152 GLU B 169 1 18 HELIX 19 AC1 PRO B 181 ARG B 194 1 14 HELIX 20 AC2 PRO B 195 LEU B 197 5 3 SHEET 1 AA1 5 VAL A 34 ARG A 38 0 SHEET 2 AA1 5 VAL A 86 ASP A 90 1 O ILE A 88 N THR A 37 SHEET 3 AA1 5 LEU A 4 GLY A 10 1 N LEU A 6 O VAL A 87 SHEET 4 AA1 5 LEU A 126 ASP A 131 1 O PHE A 128 N THR A 7 SHEET 5 AA1 5 PHE A 173 ASP A 177 1 O LEU A 176 N ASP A 131 SHEET 1 AA2 5 VAL B 34 ARG B 38 0 SHEET 2 AA2 5 VAL B 86 ASP B 90 1 O ILE B 88 N LEU B 35 SHEET 3 AA2 5 LEU B 4 GLY B 10 1 N LEU B 6 O VAL B 87 SHEET 4 AA2 5 LEU B 126 ASP B 131 1 O PHE B 128 N THR B 7 SHEET 5 AA2 5 PHE B 173 ASP B 177 1 O LEU B 176 N LEU B 129 LINK OG1 THR A 7 MG MG A 202 1555 1555 2.68 LINK OG1 THR A 17 MG MG A 206 1555 1555 2.31 LINK OH TYR A 62 MG MG A 203 1555 1555 2.80 LINK OG SER A 66 MG MG A 203 1555 1555 2.92 LINK OD2 ASP A 94 MG MG A 202 1555 1555 2.45 LINK O LEU A 165 MG MG A 205 1555 1555 2.92 LINK OE2 GLU A 169 MG MG A 205 1555 1555 2.72 LINK O2B ADP A 201 MG MG A 206 1555 1555 2.60 LINK MG MG A 204 O HOH A 309 1555 1555 2.88 LINK MG MG A 205 O HOH A 315 1555 1555 2.38 LINK MG MG A 206 O HOH A 301 1555 1555 2.07 LINK MG MG A 206 O HOH A 307 1555 1555 2.03 LINK MG MG A 206 O HOH A 313 1555 1555 1.89 LINK O PHE B 65 MG MG B 203 1555 1555 2.81 LINK OG SER B 66 MG MG B 202 1555 1555 2.68 LINK OD2 ASP B 68 MG MG B 203 1555 1555 2.77 LINK O LEU B 165 MG MG B 204 1555 1555 2.74 LINK OE2 GLU B 169 MG MG B 204 1555 1555 2.30 CISPEP 1 GLU A 39 PRO A 40 0 2.17 CISPEP 2 GLU B 39 PRO B 40 0 -7.25 SITE 1 AC1 15 LEU A 11 GLY A 13 SER A 14 GLY A 15 SITE 2 AC1 15 LYS A 16 THR A 17 THR A 18 GLN A 54 SITE 3 AC1 15 ALA A 178 LEU A 180 GLU A 182 MG A 206 SITE 4 AC1 15 HOH A 301 HOH A 302 HOH A 313 SITE 1 AC2 5 THR A 7 GLU A 9 TYR A 92 ASP A 94 SITE 2 AC2 5 THR A 127 SITE 1 AC3 3 TYR A 62 SER A 66 ARG A 69 SITE 1 AC4 4 GLU A 160 ALA A 164 HOH A 309 LEU B 52 SITE 1 AC5 4 LEU A 165 ALA A 168 GLU A 169 HOH A 315 SITE 1 AC6 5 THR A 17 ADP A 201 HOH A 301 HOH A 307 SITE 2 AC6 5 HOH A 313 SITE 1 AC7 3 GLU A 169 GLY A 171 ARG A 172 SITE 1 AC8 14 ASP A 12 ARG A 38 GLU A 39 ARG A 48 SITE 2 AC8 14 PHE A 65 ARG A 69 ARG A 91 SER A 95 SITE 3 AC8 14 SER A 96 TYR A 99 GLN A 100 HOH A 301 SITE 4 AC8 14 HOH A 307 HOH A 310 SITE 1 AC9 11 ASP B 12 ARG B 38 GLU B 39 PRO B 40 SITE 2 AC9 11 ARG B 48 PHE B 65 ARG B 69 SER B 95 SITE 3 AC9 11 SER B 96 TYR B 99 GLN B 100 SITE 1 AD1 3 TYR B 62 SER B 66 ARG B 69 SITE 1 AD2 2 PHE B 65 ASP B 68 SITE 1 AD3 3 LEU B 165 ALA B 168 GLU B 169 SITE 1 AD4 1 PRO B 124 SITE 1 AD5 2 LEU B 4 PHE B 5 SITE 1 AD6 4 GLY B 13 GLY B 15 LYS B 16 HOH B 326 CRYST1 47.408 47.658 152.329 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021093 0.000000 0.000000 0.00000 SCALE2 0.000000 0.020983 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006565 0.00000