HEADER SIGNALING PROTEIN 11-FEB-18 5ZBH TITLE THE CRYSTAL STRUCTURE OF HUMAN NEUROPEPTIDE Y Y1 RECEPTOR WITH BMS- TITLE 2 193885 COMPND MOL_ID: 1; COMPND 2 MOLECULE: NEUROPEPTIDE Y RECEPTOR TYPE 1,T4 LYSOZYME,NEUROPEPTIDE Y COMPND 3 RECEPTOR TYPE 1; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: UNP RESIDUES 2-241,UNP RESIDUES 2-161,UNP RESIDUES 250-358; COMPND 6 SYNONYM: NPY1-R,LYSIS PROTEIN,LYSOZYME,MURAMIDASE,NPY1-R; COMPND 7 EC: 3.2.1.17; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS, ENTEROBACTERIA PHAGE T4T; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606, 857277; SOURCE 5 GENE: NPY1R, NPYR, NPYY1, E, T4TP126; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS G PROTEIN-COUPLED RECEPTOR NEUROPEPTIDE Y Y1 RECEPTOR INHIBITOR KEYWDS 2 COMPLEX STRUCTURE, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Z.YANG,S.HAN,Q.ZHAO,B.WU REVDAT 3 09-MAY-18 5ZBH 1 JRNL REVDAT 2 02-MAY-18 5ZBH 1 JRNL REVDAT 1 25-APR-18 5ZBH 0 JRNL AUTH Z.YANG,S.HAN,M.KELLER,A.KAISER,B.J.BENDER,M.BOSSE,K.BURKERT, JRNL AUTH 2 L.M.KOGLER,D.WIFLING,G.BERNHARDT,N.PLANK,T.LITTMANN, JRNL AUTH 3 P.SCHMIDT,C.YI,B.LI,S.YE,R.ZHANG,B.XU,D.LARHAMMAR, JRNL AUTH 4 R.C.STEVENS,D.HUSTER,J.MEILER,Q.ZHAO,A.G.BECK-SICKINGER, JRNL AUTH 5 A.BUSCHAUER,B.WU JRNL TITL STRUCTURAL BASIS OF LIGAND BINDING MODES AT THE NEUROPEPTIDE JRNL TITL 2 Y Y1RECEPTOR JRNL REF NATURE V. 556 520 2018 JRNL REFN ESSN 1476-4687 JRNL PMID 29670288 JRNL DOI 10.1038/S41586-018-0046-X REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.2 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.82 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.5 REMARK 3 NUMBER OF REFLECTIONS : 15600 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.224 REMARK 3 R VALUE (WORKING SET) : 0.222 REMARK 3 FREE R VALUE : 0.251 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.110 REMARK 3 FREE R VALUE TEST SET COUNT : 797 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.000 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 8 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 3.21 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 80.95 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2458 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2720 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2349 REMARK 3 BIN R VALUE (WORKING SET) : 0.2710 REMARK 3 BIN FREE R VALUE : 0.2910 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.43 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 109 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3654 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 43 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 117.9 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 109.3 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 7.44550 REMARK 3 B22 (A**2) : -20.77820 REMARK 3 B33 (A**2) : 13.33270 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.520 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 1.258 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.366 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 1.454 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.375 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.924 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.913 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 3785 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 5154 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1291 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 77 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 575 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 3785 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 509 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 4443 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.01 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.11 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 20.17 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): 13.4450 29.2797 -27.7696 REMARK 3 T TENSOR REMARK 3 T11: -0.1576 T22: 0.1686 REMARK 3 T33: -0.2744 T12: -0.0165 REMARK 3 T13: -0.0325 T23: 0.0191 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 1.4362 REMARK 3 L33: 2.1889 L12: 0.0027 REMARK 3 L13: 0.0512 L23: 1.3400 REMARK 3 S TENSOR REMARK 3 S11: -0.0516 S12: -0.0527 S13: 0.0061 REMARK 3 S21: 0.1753 S22: 0.0239 S23: 0.0281 REMARK 3 S31: 0.1989 S32: 0.3511 S33: 0.0277 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5ZBH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 15-FEB-18. REMARK 100 THE DEPOSITION ID IS D_1300006804. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-DEC-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.2-7.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15601 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.4 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.17 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES, PH 7.2-7.6, 20% PEG400, PH REMARK 280 7.4, LIPIDIC CUBIC PHASE, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 84.91000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 84.91000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 38.29000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 63.12000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 38.29000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 63.12000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 84.91000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 38.29000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 63.12000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 84.91000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 38.29000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 63.12000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AUTHORS STATE THAT THE BIOLOGICAL UNIT IS UNKNOWN REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A -8 REMARK 465 TYR A -7 REMARK 465 LYS A -6 REMARK 465 ASP A -5 REMARK 465 ASP A -4 REMARK 465 ASP A -3 REMARK 465 ASP A -2 REMARK 465 GLY A -1 REMARK 465 ALA A 0 REMARK 465 PRO A 1 REMARK 465 ASN A 2 REMARK 465 SER A 3 REMARK 465 THR A 4 REMARK 465 LEU A 5 REMARK 465 PHE A 6 REMARK 465 SER A 7 REMARK 465 GLN A 8 REMARK 465 VAL A 9 REMARK 465 GLU A 10 REMARK 465 ASN A 11 REMARK 465 HIS A 12 REMARK 465 SER A 13 REMARK 465 VAL A 14 REMARK 465 HIS A 15 REMARK 465 SER A 16 REMARK 465 ASN A 17 REMARK 465 PHE A 18 REMARK 465 SER A 19 REMARK 465 GLU A 20 REMARK 465 LYS A 21 REMARK 465 ASN A 22 REMARK 465 ALA A 23 REMARK 465 GLN A 24 REMARK 465 LEU A 25 REMARK 465 LEU A 26 REMARK 465 ALA A 27 REMARK 465 PHE A 28 REMARK 465 GLU A 29 REMARK 465 ASN A 30 REMARK 465 PHE A 340 REMARK 465 ARG A 341 REMARK 465 SER A 342 REMARK 465 ARG A 343 REMARK 465 ASP A 344 REMARK 465 ASP A 345 REMARK 465 ASP A 346 REMARK 465 TYR A 347 REMARK 465 GLU A 348 REMARK 465 THR A 349 REMARK 465 ILE A 350 REMARK 465 ALA A 351 REMARK 465 MET A 352 REMARK 465 SER A 353 REMARK 465 THR A 354 REMARK 465 MET A 355 REMARK 465 HIS A 356 REMARK 465 THR A 357 REMARK 465 ASP A 358 REMARK 465 GLU A 359 REMARK 465 PHE A 360 REMARK 465 LEU A 361 REMARK 465 GLU A 362 REMARK 465 VAL A 363 REMARK 465 LEU A 364 REMARK 465 PHE A 365 REMARK 465 GLN A 366 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 31 CG OD1 OD2 REMARK 470 ASP A 32 CG OD1 OD2 REMARK 470 HIS A 34 CG ND1 CD2 CE1 NE2 REMARK 470 MET A 71 CG SD CE REMARK 470 ARG A 149 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 189 CG CD1 CD2 REMARK 470 LYS A 193 CG CD CE NZ REMARK 470 ASP A 250 CG OD1 OD2 REMARK 470 ASN A 251 CG OD1 ND2 REMARK 470 LYS A 252 CG CD CE NZ REMARK 470 ARG A 254 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 325 CG CD CE NZ REMARK 470 ARG A 329 CG CD NE CZ NH1 NH2 REMARK 470 PHE A 333 CG CD1 CD2 CE1 CE2 CZ REMARK 470 PHE A 334 CG CD1 CD2 CE1 CE2 CZ REMARK 470 PHE A 335 CG CD1 CD2 CE1 CE2 CZ REMARK 470 PHE A 337 CG CD1 CD2 CE1 CE2 CZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 34 103.56 -162.48 REMARK 500 GLU A 70 -10.66 84.35 REMARK 500 ASN A 152 -13.31 -49.83 REMARK 500 GLU A 182 78.14 -108.01 REMARK 500 TYR A 220 -71.50 -113.74 REMARK 500 ASP A1009 -68.54 -91.83 REMARK 500 PHE A1113 43.84 -90.76 REMARK 500 THR A1141 76.60 -113.57 REMARK 500 TYR A1160 68.81 -102.90 REMARK 500 ASN A 289 56.87 -109.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 9AF A 1201 DBREF 5ZBH A 2 241 UNP P25929 NPY1R_HUMAN 2 241 DBREF 5ZBH A 1001 1160 UNP D9IEF7 D9IEF7_BPT4 2 161 DBREF 5ZBH A 250 358 UNP P25929 NPY1R_HUMAN 250 358 SEQADV 5ZBH ASP A -8 UNP P25929 EXPRESSION TAG SEQADV 5ZBH TYR A -7 UNP P25929 EXPRESSION TAG SEQADV 5ZBH LYS A -6 UNP P25929 EXPRESSION TAG SEQADV 5ZBH ASP A -5 UNP P25929 EXPRESSION TAG SEQADV 5ZBH ASP A -4 UNP P25929 EXPRESSION TAG SEQADV 5ZBH ASP A -3 UNP P25929 EXPRESSION TAG SEQADV 5ZBH ASP A -2 UNP P25929 EXPRESSION TAG SEQADV 5ZBH GLY A -1 UNP P25929 EXPRESSION TAG SEQADV 5ZBH ALA A 0 UNP P25929 EXPRESSION TAG SEQADV 5ZBH PRO A 1 UNP P25929 EXPRESSION TAG SEQADV 5ZBH TRP A 129 UNP P25929 PHE 129 ENGINEERED MUTATION SEQADV 5ZBH THR A 1053 UNP D9IEF7 CYS 54 ENGINEERED MUTATION SEQADV 5ZBH ALA A 1096 UNP D9IEF7 CYS 97 ENGINEERED MUTATION SEQADV 5ZBH GLU A 359 UNP P25929 EXPRESSION TAG SEQADV 5ZBH PHE A 360 UNP P25929 EXPRESSION TAG SEQADV 5ZBH LEU A 361 UNP P25929 EXPRESSION TAG SEQADV 5ZBH GLU A 362 UNP P25929 EXPRESSION TAG SEQADV 5ZBH VAL A 363 UNP P25929 EXPRESSION TAG SEQADV 5ZBH LEU A 364 UNP P25929 EXPRESSION TAG SEQADV 5ZBH PHE A 365 UNP P25929 EXPRESSION TAG SEQADV 5ZBH GLN A 366 UNP P25929 EXPRESSION TAG SEQRES 1 A 527 ASP TYR LYS ASP ASP ASP ASP GLY ALA PRO ASN SER THR SEQRES 2 A 527 LEU PHE SER GLN VAL GLU ASN HIS SER VAL HIS SER ASN SEQRES 3 A 527 PHE SER GLU LYS ASN ALA GLN LEU LEU ALA PHE GLU ASN SEQRES 4 A 527 ASP ASP CYS HIS LEU PRO LEU ALA MET ILE PHE THR LEU SEQRES 5 A 527 ALA LEU ALA TYR GLY ALA VAL ILE ILE LEU GLY VAL SER SEQRES 6 A 527 GLY ASN LEU ALA LEU ILE ILE ILE ILE LEU LYS GLN LYS SEQRES 7 A 527 GLU MET ARG ASN VAL THR ASN ILE LEU ILE VAL ASN LEU SEQRES 8 A 527 SER PHE SER ASP LEU LEU VAL ALA ILE MET CYS LEU PRO SEQRES 9 A 527 PHE THR PHE VAL TYR THR LEU MET ASP HIS TRP VAL PHE SEQRES 10 A 527 GLY GLU ALA MET CYS LYS LEU ASN PRO PHE VAL GLN CYS SEQRES 11 A 527 VAL SER ILE THR VAL SER ILE TRP SER LEU VAL LEU ILE SEQRES 12 A 527 ALA VAL GLU ARG HIS GLN LEU ILE ILE ASN PRO ARG GLY SEQRES 13 A 527 TRP ARG PRO ASN ASN ARG HIS ALA TYR VAL GLY ILE ALA SEQRES 14 A 527 VAL ILE TRP VAL LEU ALA VAL ALA SER SER LEU PRO PHE SEQRES 15 A 527 LEU ILE TYR GLN VAL MET THR ASP GLU PRO PHE GLN ASN SEQRES 16 A 527 VAL THR LEU ASP ALA TYR LYS ASP LYS TYR VAL CYS PHE SEQRES 17 A 527 ASP GLN PHE PRO SER ASP SER HIS ARG LEU SER TYR THR SEQRES 18 A 527 THR LEU LEU LEU VAL LEU GLN TYR PHE GLY PRO LEU CYS SEQRES 19 A 527 PHE ILE PHE ILE CYS TYR PHE LYS ILE TYR ILE ARG LEU SEQRES 20 A 527 LYS ARG ARG ASN ILE PHE GLU MET LEU ARG ILE ASP GLU SEQRES 21 A 527 GLY LEU ARG LEU LYS ILE TYR LYS ASP THR GLU GLY TYR SEQRES 22 A 527 TYR THR ILE GLY ILE GLY HIS LEU LEU THR LYS SER PRO SEQRES 23 A 527 SER LEU ASN ALA ALA LYS SER GLU LEU ASP LYS ALA ILE SEQRES 24 A 527 GLY ARG ASN THR ASN GLY VAL ILE THR LYS ASP GLU ALA SEQRES 25 A 527 GLU LYS LEU PHE ASN GLN ASP VAL ASP ALA ALA VAL ARG SEQRES 26 A 527 GLY ILE LEU ARG ASN ALA LYS LEU LYS PRO VAL TYR ASP SEQRES 27 A 527 SER LEU ASP ALA VAL ARG ARG ALA ALA LEU ILE ASN MET SEQRES 28 A 527 VAL PHE GLN MET GLY GLU THR GLY VAL ALA GLY PHE THR SEQRES 29 A 527 ASN SER LEU ARG MET LEU GLN GLN LYS ARG TRP ASP GLU SEQRES 30 A 527 ALA ALA VAL ASN LEU ALA LYS SER ARG TRP TYR ASN GLN SEQRES 31 A 527 THR PRO ASN ARG ALA LYS ARG VAL ILE THR THR PHE ARG SEQRES 32 A 527 THR GLY THR TRP ASP ALA TYR ASP ASN LYS TYR ARG SER SEQRES 33 A 527 SER GLU THR LYS ARG ILE ASN ILE MET LEU LEU SER ILE SEQRES 34 A 527 VAL VAL ALA PHE ALA VAL CYS TRP LEU PRO LEU THR ILE SEQRES 35 A 527 PHE ASN THR VAL PHE ASP TRP ASN HIS GLN ILE ILE ALA SEQRES 36 A 527 THR CYS ASN HIS ASN LEU LEU PHE LEU LEU CYS HIS LEU SEQRES 37 A 527 THR ALA MET ILE SER THR CYS VAL ASN PRO ILE PHE TYR SEQRES 38 A 527 GLY PHE LEU ASN LYS ASN PHE GLN ARG ASP LEU GLN PHE SEQRES 39 A 527 PHE PHE ASN PHE CYS ASP PHE ARG SER ARG ASP ASP ASP SEQRES 40 A 527 TYR GLU THR ILE ALA MET SER THR MET HIS THR ASP GLU SEQRES 41 A 527 PHE LEU GLU VAL LEU PHE GLN HET 9AF A1201 43 HETNAM 9AF DIMETHYL 4-{3-[({3-[4-(3-METHOXYPHENYL)PIPERIDIN-1- HETNAM 2 9AF YL]PROPYL}CARBAMOYL)AMINO]PHENYL}-2,6-DIMETHYL-1,4- HETNAM 3 9AF DIHYDROPYRIDINE-3,5-DICARBOXYLATE FORMUL 2 9AF C33 H42 N4 O6 HELIX 1 AA1 PRO A 36 GLN A 68 1 33 HELIX 2 AA2 ASN A 73 CYS A 93 1 21 HELIX 3 AA3 CYS A 93 LEU A 102 1 10 HELIX 4 AA4 PHE A 108 ASN A 144 1 37 HELIX 5 AA5 ASN A 152 TYR A 176 1 25 HELIX 6 AA6 SER A 204 TYR A 220 1 17 HELIX 7 AA7 TYR A 220 GLU A 1010 1 32 HELIX 8 AA8 SER A 1037 ILE A 1049 1 13 HELIX 9 AA9 THR A 1058 ASN A 1080 1 23 HELIX 10 AB1 LEU A 1083 LEU A 1090 1 8 HELIX 11 AB2 ASP A 1091 GLY A 1106 1 16 HELIX 12 AB3 GLY A 1106 GLY A 1112 1 7 HELIX 13 AB4 PHE A 1113 GLN A 1122 1 10 HELIX 14 AB5 ARG A 1124 LEU A 1132 1 9 HELIX 15 AB6 SER A 1135 THR A 1141 1 7 HELIX 16 AB7 THR A 1141 GLY A 1155 1 15 HELIX 17 AB8 THR A 1156 TYR A 1160 5 5 HELIX 18 AB9 TYR A 253 ASN A 289 1 37 HELIX 19 AC1 THR A 295 ILE A 311 1 17 HELIX 20 AC2 ILE A 311 TYR A 320 1 10 HELIX 21 AC3 ASN A 324 ASN A 336 1 13 SHEET 1 AA1 2 GLN A 177 THR A 180 0 SHEET 2 AA1 2 VAL A 197 ASP A 200 -1 O PHE A 199 N VAL A 178 SHEET 1 AA2 3 ARG A1013 LYS A1018 0 SHEET 2 AA2 3 TYR A1024 GLY A1027 -1 O THR A1025 N TYR A1017 SHEET 3 AA2 3 HIS A1030 THR A1033 -1 O LEU A1032 N TYR A1024 SSBOND 1 CYS A 33 CYS A 296 1555 1555 2.04 SSBOND 2 CYS A 113 CYS A 198 1555 1555 2.04 SITE 1 AC1 20 PRO A 117 GLN A 120 CYS A 121 ILE A 124 SITE 2 AC1 20 PHE A 173 ASP A 200 THR A 212 LEU A 215 SITE 3 AC1 20 GLN A 219 TYR A 220 THR A 280 PHE A 282 SITE 4 AC1 20 ASN A 283 THR A 284 PHE A 286 ASP A 287 SITE 5 AC1 20 ALA A 294 HIS A 298 ASN A 299 PHE A 302 CRYST1 76.580 126.240 169.820 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013058 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007921 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005889 0.00000