HEADER PLANT PROTEIN 12-FEB-18 5ZBI TITLE CRYSTAL STRUCTURE OF ASPARAGINYL ENDOPEPTIDASES FROM VIOLA CANADENSIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEPTIDE ASPARAGINYL LIGASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIOLA CANADENSIS; SOURCE 3 ORGANISM_TAXID: 97421; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PEPTIDE LIGASE, PLANT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Y.H.WONG,J.LESCAR REVDAT 2 22-NOV-23 5ZBI 1 REMARK REVDAT 1 09-MAY-18 5ZBI 0 JRNL AUTH Y.H.WONG,J.LESCAR JRNL TITL CRYSTAL STRUCTURE OF PEPTIDE ASPARAGINYL LIGASE FROM VIOLA JRNL TITL 2 CANADENSIS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.09 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.3 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.09 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.42 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 53019 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 2661 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.09 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.14 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.09 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 3635 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2156 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3451 REMARK 3 BIN R VALUE (WORKING SET) : 0.2136 REMARK 3 BIN FREE R VALUE : 0.2513 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.06 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 184 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6557 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 498 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 31.49 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.22240 REMARK 3 B22 (A**2) : -8.52830 REMARK 3 B33 (A**2) : 7.30590 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.25760 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.260 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.217 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.172 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.210 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.171 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.936 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.914 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 6721 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 9114 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 2281 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 172 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 972 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 6721 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 2 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 853 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 8662 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.05 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.26 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 18.14 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5ZBI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 14-FEB-18. REMARK 100 THE DEPOSITION ID IS D_1300006797. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-NOV-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 53019 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.090 REMARK 200 RESOLUTION RANGE LOW (A) : 88.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : 0.09900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.09 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.1 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 0.67100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 5H0I REMARK 200 REMARK 200 REMARK: PLATE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 35.55 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.91 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULFATE, BIS-TRIS PH 5.5, PEG REMARK 280 3350., VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 92.23500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.04000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 92.23500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 31.04000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2030 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32560 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -64 REMARK 465 ALA A -63 REMARK 465 HIS A -62 REMARK 465 HIS A -61 REMARK 465 HIS A -60 REMARK 465 HIS A -59 REMARK 465 HIS A -58 REMARK 465 HIS A -57 REMARK 465 MET A -56 REMARK 465 GLN A -55 REMARK 465 ILE A -54 REMARK 465 PHE A -53 REMARK 465 VAL A -52 REMARK 465 LYS A -51 REMARK 465 THR A -50 REMARK 465 LEU A -49 REMARK 465 THR A -48 REMARK 465 GLY A -47 REMARK 465 LYS A -46 REMARK 465 THR A -45 REMARK 465 ILE A -44 REMARK 465 THR A -43 REMARK 465 LEU A -42 REMARK 465 GLU A -41 REMARK 465 VAL A -40 REMARK 465 GLU A -39 REMARK 465 PRO A -38 REMARK 465 SER A -37 REMARK 465 ASP A -36 REMARK 465 THR A -35 REMARK 465 ILE A -34 REMARK 465 GLU A -33 REMARK 465 ASN A -32 REMARK 465 VAL A -31 REMARK 465 LYS A -30 REMARK 465 ALA A -29 REMARK 465 LYS A -28 REMARK 465 ILE A -27 REMARK 465 GLN A -26 REMARK 465 ASP A -25 REMARK 465 LYS A -24 REMARK 465 GLU A -23 REMARK 465 GLY A -22 REMARK 465 ILE A -21 REMARK 465 PRO A -20 REMARK 465 PRO A -19 REMARK 465 ASP A -18 REMARK 465 GLN A -17 REMARK 465 GLN A -16 REMARK 465 ARG A -15 REMARK 465 LEU A -14 REMARK 465 ILE A -13 REMARK 465 PHE A -12 REMARK 465 ALA A -11 REMARK 465 GLY A -10 REMARK 465 LYS A -9 REMARK 465 GLN A -8 REMARK 465 LEU A -7 REMARK 465 GLU A -6 REMARK 465 ASP A -5 REMARK 465 GLY A -4 REMARK 465 ARG A -3 REMARK 465 THR A -2 REMARK 465 LEU A -1 REMARK 465 SER A 0 REMARK 465 ASP A 1 REMARK 465 TYR A 2 REMARK 465 ASN A 3 REMARK 465 ILE A 4 REMARK 465 GLN A 5 REMARK 465 LYS A 6 REMARK 465 GLU A 7 REMARK 465 SER A 8 REMARK 465 THR A 9 REMARK 465 LEU A 10 REMARK 465 HIS A 11 REMARK 465 LEU A 12 REMARK 465 VAL A 13 REMARK 465 LEU A 14 REMARK 465 ARG A 15 REMARK 465 LEU A 16 REMARK 465 ARG A 17 REMARK 465 GLY A 18 REMARK 465 GLY A 19 REMARK 465 ARG A 20 REMARK 465 ASP A 21 REMARK 465 ILE A 22 REMARK 465 THR A 23 REMARK 465 GLY A 24 REMARK 465 ASP A 25 REMARK 465 GLY A 26 REMARK 465 PHE A 27 REMARK 465 LEU A 28 REMARK 465 ARG A 29 REMARK 465 LEU A 30 REMARK 465 PRO A 31 REMARK 465 SER A 32 REMARK 465 HIS A 33 REMARK 465 GLY A 34 REMARK 465 ASN A 35 REMARK 465 GLY A 36 REMARK 465 ASN A 37 REMARK 465 SER A 38 REMARK 465 GLY A 39 REMARK 465 ASP A 40 REMARK 465 VAL A 41 REMARK 465 ASP A 42 REMARK 465 SER A 43 REMARK 465 LYS A 44 REMARK 465 GLU A 326 REMARK 465 GLU A 327 REMARK 465 LYS A 328 REMARK 465 MET B -64 REMARK 465 ALA B -63 REMARK 465 HIS B -62 REMARK 465 HIS B -61 REMARK 465 HIS B -60 REMARK 465 HIS B -59 REMARK 465 HIS B -58 REMARK 465 HIS B -57 REMARK 465 MET B -56 REMARK 465 GLN B -55 REMARK 465 ILE B -54 REMARK 465 PHE B -53 REMARK 465 VAL B -52 REMARK 465 LYS B -51 REMARK 465 THR B -50 REMARK 465 LEU B -49 REMARK 465 THR B -48 REMARK 465 GLY B -47 REMARK 465 LYS B -46 REMARK 465 THR B -45 REMARK 465 ILE B -44 REMARK 465 THR B -43 REMARK 465 LEU B -42 REMARK 465 GLU B -41 REMARK 465 VAL B -40 REMARK 465 GLU B -39 REMARK 465 PRO B -38 REMARK 465 SER B -37 REMARK 465 ASP B -36 REMARK 465 THR B -35 REMARK 465 ILE B -34 REMARK 465 GLU B -33 REMARK 465 ASN B -32 REMARK 465 VAL B -31 REMARK 465 LYS B -30 REMARK 465 ALA B -29 REMARK 465 LYS B -28 REMARK 465 ILE B -27 REMARK 465 GLN B -26 REMARK 465 ASP B -25 REMARK 465 LYS B -24 REMARK 465 GLU B -23 REMARK 465 GLY B -22 REMARK 465 ILE B -21 REMARK 465 PRO B -20 REMARK 465 PRO B -19 REMARK 465 ASP B -18 REMARK 465 GLN B -17 REMARK 465 GLN B -16 REMARK 465 ARG B -15 REMARK 465 LEU B -14 REMARK 465 ILE B -13 REMARK 465 PHE B -12 REMARK 465 ALA B -11 REMARK 465 GLY B -10 REMARK 465 LYS B -9 REMARK 465 GLN B -8 REMARK 465 LEU B -7 REMARK 465 GLU B -6 REMARK 465 ASP B -5 REMARK 465 GLY B -4 REMARK 465 ARG B -3 REMARK 465 THR B -2 REMARK 465 LEU B -1 REMARK 465 SER B 0 REMARK 465 ASP B 1 REMARK 465 TYR B 2 REMARK 465 ASN B 3 REMARK 465 ILE B 4 REMARK 465 GLN B 5 REMARK 465 LYS B 6 REMARK 465 GLU B 7 REMARK 465 SER B 8 REMARK 465 THR B 9 REMARK 465 LEU B 10 REMARK 465 HIS B 11 REMARK 465 LEU B 12 REMARK 465 VAL B 13 REMARK 465 LEU B 14 REMARK 465 ARG B 15 REMARK 465 LEU B 16 REMARK 465 ARG B 17 REMARK 465 GLY B 18 REMARK 465 GLY B 19 REMARK 465 ARG B 20 REMARK 465 ASP B 21 REMARK 465 ILE B 22 REMARK 465 THR B 23 REMARK 465 GLY B 24 REMARK 465 ASP B 25 REMARK 465 GLY B 26 REMARK 465 PHE B 27 REMARK 465 LEU B 28 REMARK 465 ARG B 29 REMARK 465 LEU B 30 REMARK 465 PRO B 31 REMARK 465 SER B 32 REMARK 465 HIS B 33 REMARK 465 GLY B 34 REMARK 465 ASN B 35 REMARK 465 GLY B 36 REMARK 465 ASN B 37 REMARK 465 SER B 38 REMARK 465 GLY B 39 REMARK 465 ASP B 40 REMARK 465 VAL B 41 REMARK 465 ASP B 42 REMARK 465 SER B 43 REMARK 465 LYS B 44 REMARK 465 GLU B 327 REMARK 465 LYS B 328 REMARK 465 SER B 329 REMARK 465 SER B 330 REMARK 465 SER B 331 REMARK 465 ASN B 465 REMARK 465 PHE B 466 REMARK 465 PRO B 467 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 245 CG CD OE1 OE2 REMARK 470 GLU B 398 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 120 60.09 -112.36 REMARK 500 ASP A 165 -145.61 172.48 REMARK 500 THR A 197 37.51 -91.96 REMARK 500 GLU A 245 -75.92 -44.42 REMARK 500 ASN A 465 20.12 -148.77 REMARK 500 LYS B 120 61.06 -113.26 REMARK 500 ASP B 165 -145.61 173.16 REMARK 500 THR B 197 37.87 -91.65 REMARK 500 TYR B 240 64.77 63.19 REMARK 500 GLN B 244 -74.01 -127.34 REMARK 500 GLU B 245 -104.00 -129.16 REMARK 500 ASP B 325 -160.66 -75.43 REMARK 500 ALA B 336 -75.05 -98.35 REMARK 500 ALA B 394 -103.51 46.56 REMARK 500 LYS B 395 -0.86 87.83 REMARK 500 CYS B 428 -168.78 -107.64 REMARK 500 SER B 432 -163.97 44.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 891 DISTANCE = 7.27 ANGSTROMS REMARK 525 HOH B 706 DISTANCE = 6.99 ANGSTROMS REMARK 525 HOH B 707 DISTANCE = 8.62 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 501 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 430 O REMARK 620 2 TYR A 434 O 126.5 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 501 DBREF 5ZBI A -64 467 PDB 5ZBI 5ZBI -64 467 DBREF 5ZBI B -64 467 PDB 5ZBI 5ZBI -64 467 SEQRES 1 A 532 MET ALA HIS HIS HIS HIS HIS HIS MET GLN ILE PHE VAL SEQRES 2 A 532 LYS THR LEU THR GLY LYS THR ILE THR LEU GLU VAL GLU SEQRES 3 A 532 PRO SER ASP THR ILE GLU ASN VAL LYS ALA LYS ILE GLN SEQRES 4 A 532 ASP LYS GLU GLY ILE PRO PRO ASP GLN GLN ARG LEU ILE SEQRES 5 A 532 PHE ALA GLY LYS GLN LEU GLU ASP GLY ARG THR LEU SER SEQRES 6 A 532 ASP TYR ASN ILE GLN LYS GLU SER THR LEU HIS LEU VAL SEQRES 7 A 532 LEU ARG LEU ARG GLY GLY ARG ASP ILE THR GLY ASP GLY SEQRES 8 A 532 PHE LEU ARG LEU PRO SER HIS GLY ASN GLY ASN SER GLY SEQRES 9 A 532 ASP VAL ASP SER LYS ALA GLY THR LYS TRP ALA VAL LEU SEQRES 10 A 532 ILE ALA GLY SER LYS GLY TYR GLN ASN TYR ARG HIS GLN SEQRES 11 A 532 ALA ASP VAL CYS HIS ALA TYR GLN ILE LEU ARG LYS GLY SEQRES 12 A 532 GLY VAL LYS ASP GLU ASN ILE ILE VAL PHE MET TYR ASP SEQRES 13 A 532 ASP ILE ALA TYR ASP ILE ARG ASN PRO TYR PRO GLY THR SEQRES 14 A 532 ILE ILE ASN SER PRO ASP LYS LYS ASP VAL TYR LYS GLY SEQRES 15 A 532 VAL PRO LYS ASP TYR THR GLY GLU ASP VAL ASN VAL GLN SEQRES 16 A 532 ASN PHE LEU ALA VAL ILE LEU GLY ASN LYS THR ALA LEU SEQRES 17 A 532 THR GLY GLY SER GLY LYS VAL LEU ASP THR ARG PRO ASN SEQRES 18 A 532 ASP HIS ILE PHE ILE TYR TYR THR ASP HIS GLY TYR PRO SEQRES 19 A 532 GLY VAL LEU GLY MET PRO THR GLU PRO TYR LEU TYR ALA SEQRES 20 A 532 ASN ASP LEU ILE ASP THR LEU LYS LYS LYS HIS ALA LEU SEQRES 21 A 532 GLY THR TYR GLU GLY LEU VAL PHE TYR VAL GLU ALA CYS SEQRES 22 A 532 GLU SER ALA SER ILE PHE GLU GLY LEU LEU PRO ASP GLY SEQRES 23 A 532 LEU ASN ILE TYR VAL SER THR ALA ALA LYS ALA GLY GLU SEQRES 24 A 532 GLY SER TRP VAL ALA TYR CYS PRO SER GLN GLU PRO PRO SEQRES 25 A 532 VAL PRO ALA GLU TYR GLY THR CYS VAL GLY ASP LEU TYR SEQRES 26 A 532 SER VAL THR TRP MET GLU ASP SER ASP VAL TYR ASN LEU SEQRES 27 A 532 ARG THR GLN THR LEU HIS GLN GLN TYR GLU LEU VAL LYS SEQRES 28 A 532 ASN LYS ILE ALA TYR ALA SER THR VAL SER GLN PHE GLY SEQRES 29 A 532 ASP PHE PRO ILE SER LYS ASP SER LEU PHE GLU TYR MET SEQRES 30 A 532 GLY THR ASP PRO ALA ASN GLU LYS ARG GLN TYR GLU ASP SEQRES 31 A 532 GLU GLU LYS SER SER SER PRO HIS VAL GLY ALA VAL HIS SEQRES 32 A 532 GLN ARG GLU ALA ASP LEU HIS HIS PHE TRP ASP LYS TYR SEQRES 33 A 532 GLN LYS ALA SER GLU GLY SER ARG ASN LYS VAL ASP ALA SEQRES 34 A 532 ARG LYS GLN LEU VAL GLU VAL MET LEU HIS ARG MET HIS SEQRES 35 A 532 VAL ASP ASP SER ILE GLU SER ILE ALA LYS LEU LEU PHE SEQRES 36 A 532 GLY SER GLY ALA LYS ALA SER GLU MET MET ASN THR ILE SEQRES 37 A 532 ARG PRO PRO GLY GLN PRO LEU VAL SER ASP TRP ASP CYS SEQRES 38 A 532 LEU LYS THR MET VAL ARG THR PHE GLU THR HIS CYS GLY SEQRES 39 A 532 SER LEU SER GLU TYR GLY MET LYS TYR THR ARG PHE LEU SEQRES 40 A 532 ALA ASN ILE CYS ASN SER GLY ILE GLN LYS GLU LYS MET SEQRES 41 A 532 GLY GLU ALA SER ALA GLN VAL CYS LEU ASN PHE PRO SEQRES 1 B 532 MET ALA HIS HIS HIS HIS HIS HIS MET GLN ILE PHE VAL SEQRES 2 B 532 LYS THR LEU THR GLY LYS THR ILE THR LEU GLU VAL GLU SEQRES 3 B 532 PRO SER ASP THR ILE GLU ASN VAL LYS ALA LYS ILE GLN SEQRES 4 B 532 ASP LYS GLU GLY ILE PRO PRO ASP GLN GLN ARG LEU ILE SEQRES 5 B 532 PHE ALA GLY LYS GLN LEU GLU ASP GLY ARG THR LEU SER SEQRES 6 B 532 ASP TYR ASN ILE GLN LYS GLU SER THR LEU HIS LEU VAL SEQRES 7 B 532 LEU ARG LEU ARG GLY GLY ARG ASP ILE THR GLY ASP GLY SEQRES 8 B 532 PHE LEU ARG LEU PRO SER HIS GLY ASN GLY ASN SER GLY SEQRES 9 B 532 ASP VAL ASP SER LYS ALA GLY THR LYS TRP ALA VAL LEU SEQRES 10 B 532 ILE ALA GLY SER LYS GLY TYR GLN ASN TYR ARG HIS GLN SEQRES 11 B 532 ALA ASP VAL CYS HIS ALA TYR GLN ILE LEU ARG LYS GLY SEQRES 12 B 532 GLY VAL LYS ASP GLU ASN ILE ILE VAL PHE MET TYR ASP SEQRES 13 B 532 ASP ILE ALA TYR ASP ILE ARG ASN PRO TYR PRO GLY THR SEQRES 14 B 532 ILE ILE ASN SER PRO ASP LYS LYS ASP VAL TYR LYS GLY SEQRES 15 B 532 VAL PRO LYS ASP TYR THR GLY GLU ASP VAL ASN VAL GLN SEQRES 16 B 532 ASN PHE LEU ALA VAL ILE LEU GLY ASN LYS THR ALA LEU SEQRES 17 B 532 THR GLY GLY SER GLY LYS VAL LEU ASP THR ARG PRO ASN SEQRES 18 B 532 ASP HIS ILE PHE ILE TYR TYR THR ASP HIS GLY TYR PRO SEQRES 19 B 532 GLY VAL LEU GLY MET PRO THR GLU PRO TYR LEU TYR ALA SEQRES 20 B 532 ASN ASP LEU ILE ASP THR LEU LYS LYS LYS HIS ALA LEU SEQRES 21 B 532 GLY THR TYR GLU GLY LEU VAL PHE TYR VAL GLU ALA CYS SEQRES 22 B 532 GLU SER ALA SER ILE PHE GLU GLY LEU LEU PRO ASP GLY SEQRES 23 B 532 LEU ASN ILE TYR VAL SER THR ALA ALA LYS ALA GLY GLU SEQRES 24 B 532 GLY SER TRP VAL ALA TYR CYS PRO SER GLN GLU PRO PRO SEQRES 25 B 532 VAL PRO ALA GLU TYR GLY THR CYS VAL GLY ASP LEU TYR SEQRES 26 B 532 SER VAL THR TRP MET GLU ASP SER ASP VAL TYR ASN LEU SEQRES 27 B 532 ARG THR GLN THR LEU HIS GLN GLN TYR GLU LEU VAL LYS SEQRES 28 B 532 ASN LYS ILE ALA TYR ALA SER THR VAL SER GLN PHE GLY SEQRES 29 B 532 ASP PHE PRO ILE SER LYS ASP SER LEU PHE GLU TYR MET SEQRES 30 B 532 GLY THR ASP PRO ALA ASN GLU LYS ARG GLN TYR GLU ASP SEQRES 31 B 532 GLU GLU LYS SER SER SER PRO HIS VAL GLY ALA VAL HIS SEQRES 32 B 532 GLN ARG GLU ALA ASP LEU HIS HIS PHE TRP ASP LYS TYR SEQRES 33 B 532 GLN LYS ALA SER GLU GLY SER ARG ASN LYS VAL ASP ALA SEQRES 34 B 532 ARG LYS GLN LEU VAL GLU VAL MET LEU HIS ARG MET HIS SEQRES 35 B 532 VAL ASP ASP SER ILE GLU SER ILE ALA LYS LEU LEU PHE SEQRES 36 B 532 GLY SER GLY ALA LYS ALA SER GLU MET MET ASN THR ILE SEQRES 37 B 532 ARG PRO PRO GLY GLN PRO LEU VAL SER ASP TRP ASP CYS SEQRES 38 B 532 LEU LYS THR MET VAL ARG THR PHE GLU THR HIS CYS GLY SEQRES 39 B 532 SER LEU SER GLU TYR GLY MET LYS TYR THR ARG PHE LEU SEQRES 40 B 532 ALA ASN ILE CYS ASN SER GLY ILE GLN LYS GLU LYS MET SEQRES 41 B 532 GLY GLU ALA SER ALA GLN VAL CYS LEU ASN PHE PRO HET NA A 501 1 HETNAM NA SODIUM ION FORMUL 3 NA NA 1+ FORMUL 4 HOH *498(H2 O) HELIX 1 AA1 GLY A 58 GLN A 60 5 3 HELIX 2 AA2 ASN A 61 GLY A 78 1 18 HELIX 3 AA3 LYS A 81 GLU A 83 5 3 HELIX 4 AA4 THR A 123 VAL A 127 5 5 HELIX 5 AA5 ASN A 128 GLY A 138 1 11 HELIX 6 AA6 ASN A 139 LEU A 143 5 5 HELIX 7 AA7 ALA A 182 GLY A 196 1 15 HELIX 8 AA8 GLU A 209 PHE A 214 5 6 HELIX 9 AA9 PRO A 249 GLY A 253 5 5 HELIX 10 AB1 LEU A 259 TYR A 271 1 13 HELIX 11 AB2 THR A 277 ALA A 290 1 14 HELIX 12 AB3 PHE A 301 SER A 307 5 7 HELIX 13 AB4 LEU A 308 GLY A 313 1 6 HELIX 14 AB5 ASP A 315 GLU A 319 5 5 HELIX 15 AB6 HIS A 338 LYS A 353 1 16 HELIX 16 AB7 SER A 358 GLY A 391 1 34 HELIX 17 AB8 SER A 392 THR A 402 1 11 HELIX 18 AB9 ASP A 413 GLY A 429 1 17 HELIX 19 AC1 GLY A 435 LYS A 437 5 3 HELIX 20 AC2 TYR A 438 GLY A 449 1 12 HELIX 21 AC3 GLN A 451 LEU A 464 1 14 HELIX 22 AC4 GLY B 58 GLN B 60 5 3 HELIX 23 AC5 ASN B 61 GLY B 78 1 18 HELIX 24 AC6 LYS B 81 GLU B 83 5 3 HELIX 25 AC7 THR B 123 VAL B 127 5 5 HELIX 26 AC8 ASN B 128 GLY B 138 1 11 HELIX 27 AC9 ASN B 139 LEU B 143 5 5 HELIX 28 AD1 ALA B 182 GLY B 196 1 15 HELIX 29 AD2 GLU B 209 PHE B 214 5 6 HELIX 30 AD3 PRO B 249 GLY B 253 5 5 HELIX 31 AD4 LEU B 259 TYR B 271 1 13 HELIX 32 AD5 THR B 277 ALA B 290 1 14 HELIX 33 AD6 PHE B 301 SER B 307 5 7 HELIX 34 AD7 LEU B 308 GLY B 313 1 6 HELIX 35 AD8 ASP B 315 GLU B 319 5 5 HELIX 36 AD9 GLU B 341 ALA B 354 1 14 HELIX 37 AE1 SER B 358 GLY B 391 1 34 HELIX 38 AE2 LYS B 395 ASN B 401 1 7 HELIX 39 AE3 ASP B 413 CYS B 428 1 16 HELIX 40 AE4 LEU B 431 MET B 436 1 6 HELIX 41 AE5 TYR B 438 SER B 448 1 11 HELIX 42 AE6 GLN B 451 LEU B 464 1 14 SHEET 1 AA1 6 ILE A 85 PHE A 88 0 SHEET 2 AA1 6 LYS A 48 ALA A 54 1 N LEU A 52 O ILE A 86 SHEET 3 AA1 6 HIS A 158 THR A 164 1 O TYR A 162 N VAL A 51 SHEET 4 AA1 6 GLY A 200 GLU A 206 1 O VAL A 202 N ILE A 161 SHEET 5 AA1 6 ILE A 224 THR A 228 1 O SER A 227 N PHE A 203 SHEET 6 AA1 6 SER A 296 GLY A 299 -1 O SER A 296 N THR A 228 SHEET 1 AA2 3 GLY A 167 TYR A 168 0 SHEET 2 AA2 3 VAL A 171 LEU A 172 -1 O VAL A 171 N TYR A 168 SHEET 3 AA2 3 LEU A 180 TYR A 181 -1 O LEU A 180 N LEU A 172 SHEET 1 AA3 2 VAL A 238 ALA A 239 0 SHEET 2 AA3 2 GLY A 257 ASP A 258 -1 O GLY A 257 N ALA A 239 SHEET 1 AA4 6 ILE B 85 PHE B 88 0 SHEET 2 AA4 6 LYS B 48 ALA B 54 1 N ALA B 50 O ILE B 86 SHEET 3 AA4 6 HIS B 158 THR B 164 1 O TYR B 162 N VAL B 51 SHEET 4 AA4 6 GLY B 200 GLU B 206 1 O VAL B 202 N ILE B 161 SHEET 5 AA4 6 ILE B 224 THR B 228 1 O SER B 227 N PHE B 203 SHEET 6 AA4 6 SER B 296 GLY B 299 -1 O SER B 296 N THR B 228 SHEET 1 AA5 3 GLY B 167 TYR B 168 0 SHEET 2 AA5 3 VAL B 171 LEU B 172 -1 O VAL B 171 N TYR B 168 SHEET 3 AA5 3 LEU B 180 TYR B 181 -1 O LEU B 180 N LEU B 172 SHEET 1 AA6 3 GLY B 257 ASP B 258 0 SHEET 2 AA6 3 TRP B 237 ALA B 239 -1 N ALA B 239 O GLY B 257 SHEET 3 AA6 3 GLY B 335 HIS B 338 -1 O VAL B 337 N VAL B 238 SSBOND 1 CYS A 241 CYS A 255 1555 1555 2.04 SSBOND 2 CYS A 416 CYS A 446 1555 1555 2.60 SSBOND 3 CYS A 428 CYS A 463 1555 1555 2.03 SSBOND 4 CYS B 241 CYS B 255 1555 1555 2.01 SSBOND 5 CYS B 416 CYS B 446 1555 1555 2.64 SSBOND 6 CYS B 428 CYS B 463 1555 1555 2.03 LINK O SER A 430 NA NA A 501 1555 1555 2.46 LINK O TYR A 434 NA NA A 501 1555 1555 2.34 CISPEP 1 GLU A 177 PRO A 178 0 3.09 CISPEP 2 GLU B 177 PRO B 178 0 4.97 SITE 1 AC1 6 HIS A 374 SER A 430 LEU A 431 SER A 432 SITE 2 AC1 6 GLU A 433 TYR A 434 CRYST1 184.470 62.080 82.910 90.00 106.81 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005421 0.000000 0.001638 0.00000 SCALE2 0.000000 0.016108 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012600 0.00000