HEADER ENDOCYTOSIS 12-FEB-18 5ZBU TITLE CRYSTAL STRUCTURE OF PA-TM-RING E3 LIGASE RNF13 RING DOMAIN IN COMPLEX TITLE 2 WITH E2~UB COMPND MOL_ID: 1; COMPND 2 MOLECULE: UBIQUITIN-CONJUGATING ENZYME E2 D2; COMPND 3 CHAIN: C, B; COMPND 4 SYNONYM: (E3-INDEPENDENT) E2 UBIQUITIN-CONJUGATING ENZYME D2,E2 COMPND 5 UBIQUITIN-CONJUGATING ENZYME D2,UBIQUITIN CARRIER PROTEIN D2, COMPND 6 UBIQUITIN-CONJUGATING ENZYME E2(17)KB 2,UBIQUITIN-CONJUGATING ENZYME COMPND 7 E2-17 KDA 2,UBIQUITIN-PROTEIN LIGASE D2,P53-REGULATED UBIQUITIN- COMPND 8 CONJUGATING ENZYME 1; COMPND 9 EC: 2.3.2.23,2.3.2.24; COMPND 10 ENGINEERED: YES; COMPND 11 MUTATION: YES; COMPND 12 MOL_ID: 2; COMPND 13 MOLECULE: E3 UBIQUITIN-PROTEIN LIGASE RNF13; COMPND 14 CHAIN: A, D; COMPND 15 SYNONYM: RING FINGER PROTEIN 13,RING-TYPE E3 UBIQUITIN TRANSFERASE COMPND 16 RNF13; COMPND 17 EC: 2.3.2.27; COMPND 18 ENGINEERED: YES; COMPND 19 MOL_ID: 3; COMPND 20 MOLECULE: UBIQUITIN; COMPND 21 CHAIN: E; COMPND 22 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: UBE2D2, PUBC1, UBC4, UBC5B, UBCH4, UBCH5B; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA 2 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PETSUMO2; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 GENE: RNF13, RZF; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: ROSETTA 2 (DE3); SOURCE 19 EXPRESSION_SYSTEM_PLASMID: PETSUMO2; SOURCE 20 MOL_ID: 3; SOURCE 21 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 22 ORGANISM_COMMON: HUMAN; SOURCE 23 ORGANISM_TAXID: 9606; SOURCE 24 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 25 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 26 EXPRESSION_SYSTEM_STRAIN: ROSETTA 2(DE3) KEYWDS UBIQUITIN E3 LIGASE, PA-TM-RING E3 LIGASE, RNF13, E3:E2~UB COMPLEX, KEYWDS 2 ENDOCYTOSIS EXPDTA X-RAY DIFFRACTION AUTHOR A.B.DATTA,S.SARKAR REVDAT 2 22-NOV-23 5ZBU 1 REMARK REVDAT 1 27-FEB-19 5ZBU 0 JRNL AUTH S.SARKAR,A.B.DATTA JRNL TITL CRYSTAL STRUCTURE OF PA-TM-RING E3 LIGASE RNF13 RING DOMAIN JRNL TITL 2 IN COMPLEX WITH E2~UB JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.13_2998: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.26 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 10678 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.217 REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.262 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 555 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.2595 - 5.0725 0.99 2566 128 0.1996 0.2346 REMARK 3 2 5.0725 - 4.0299 1.00 2537 135 0.2022 0.2440 REMARK 3 3 4.0299 - 3.5216 1.00 2553 104 0.2268 0.3110 REMARK 3 4 3.5216 - 3.2001 1.00 2467 188 0.2806 0.3252 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.360 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.300 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 4253 REMARK 3 ANGLE : 0.660 5760 REMARK 3 CHIRALITY : 0.045 630 REMARK 3 PLANARITY : 0.005 740 REMARK 3 DIHEDRAL : 14.968 2625 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 31 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 0 THROUGH 25 ) REMARK 3 ORIGIN FOR THE GROUP (A): -26.9611 4.3841 9.4369 REMARK 3 T TENSOR REMARK 3 T11: 0.7987 T22: 0.6960 REMARK 3 T33: 0.9907 T12: 0.0229 REMARK 3 T13: 0.0045 T23: 0.0435 REMARK 3 L TENSOR REMARK 3 L11: 9.7404 L22: 2.0465 REMARK 3 L33: 3.4132 L12: -5.2655 REMARK 3 L13: -2.2308 L23: 2.0371 REMARK 3 S TENSOR REMARK 3 S11: -1.0428 S12: -1.1673 S13: -1.1628 REMARK 3 S21: 0.4689 S22: 0.7926 S23: -0.2651 REMARK 3 S31: 0.2425 S32: 0.2138 S33: 0.2530 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 26 THROUGH 55 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.1432 4.8936 -0.5008 REMARK 3 T TENSOR REMARK 3 T11: 0.5584 T22: 0.6930 REMARK 3 T33: 1.0755 T12: -0.0335 REMARK 3 T13: 0.0021 T23: 0.1438 REMARK 3 L TENSOR REMARK 3 L11: 8.3218 L22: 4.1573 REMARK 3 L33: 7.0835 L12: -3.4500 REMARK 3 L13: -4.2036 L23: -1.7921 REMARK 3 S TENSOR REMARK 3 S11: 0.1977 S12: -0.1212 S13: 1.6294 REMARK 3 S21: -0.8571 S22: 0.2787 S23: -1.2227 REMARK 3 S31: -0.2987 S32: 0.5107 S33: -0.4735 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 56 THROUGH 111 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.9604 11.0753 -5.0034 REMARK 3 T TENSOR REMARK 3 T11: 0.9183 T22: 0.5450 REMARK 3 T33: 1.0163 T12: 0.0744 REMARK 3 T13: 0.2362 T23: 0.2228 REMARK 3 L TENSOR REMARK 3 L11: 4.8952 L22: 4.5475 REMARK 3 L33: 4.4534 L12: 0.5773 REMARK 3 L13: -1.0804 L23: -0.0027 REMARK 3 S TENSOR REMARK 3 S11: 0.1107 S12: 1.0177 S13: 1.1147 REMARK 3 S21: -0.7856 S22: -0.1548 S23: -0.5974 REMARK 3 S31: -0.8241 S32: 0.0087 S33: -0.0715 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 112 THROUGH 120 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.7516 9.1812 -18.8851 REMARK 3 T TENSOR REMARK 3 T11: 1.4414 T22: 1.6776 REMARK 3 T33: 1.2790 T12: 0.1661 REMARK 3 T13: 0.6032 T23: 0.3781 REMARK 3 L TENSOR REMARK 3 L11: 5.0588 L22: 3.1515 REMARK 3 L33: 8.9014 L12: 2.7101 REMARK 3 L13: 5.8012 L23: 1.1411 REMARK 3 S TENSOR REMARK 3 S11: 0.9390 S12: 2.5275 S13: 3.1201 REMARK 3 S21: 0.1474 S22: 0.6901 S23: 1.7367 REMARK 3 S31: 0.2737 S32: 0.7785 S33: -0.9782 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 121 THROUGH 130 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.0476 6.4419 -25.9136 REMARK 3 T TENSOR REMARK 3 T11: 1.4994 T22: 1.6253 REMARK 3 T33: 1.1095 T12: -0.0896 REMARK 3 T13: 0.1272 T23: 0.1584 REMARK 3 L TENSOR REMARK 3 L11: 8.7230 L22: 8.4929 REMARK 3 L33: 3.6844 L12: -6.0249 REMARK 3 L13: 0.0445 L23: 1.1295 REMARK 3 S TENSOR REMARK 3 S11: 1.3301 S12: 1.7041 S13: -0.2898 REMARK 3 S21: 0.5643 S22: -1.4394 S23: 0.3653 REMARK 3 S31: -1.8588 S32: 2.1107 S33: 0.2300 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 131 THROUGH 147 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.1578 0.4573 -17.2846 REMARK 3 T TENSOR REMARK 3 T11: 0.9399 T22: 1.3421 REMARK 3 T33: 1.6628 T12: 0.0198 REMARK 3 T13: 0.4998 T23: -0.0299 REMARK 3 L TENSOR REMARK 3 L11: 0.8410 L22: 1.9980 REMARK 3 L33: 8.0249 L12: 0.0054 REMARK 3 L13: 0.7949 L23: -2.1176 REMARK 3 S TENSOR REMARK 3 S11: -0.1619 S12: 0.9172 S13: -1.1431 REMARK 3 S21: -0.8986 S22: -0.3650 S23: -1.3010 REMARK 3 S31: 0.9288 S32: 1.8167 S33: 0.7012 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 0 THROUGH 15 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.1263 34.2712 12.2571 REMARK 3 T TENSOR REMARK 3 T11: 0.7321 T22: 2.4448 REMARK 3 T33: 1.3930 T12: 0.3627 REMARK 3 T13: 0.0848 T23: 0.4388 REMARK 3 L TENSOR REMARK 3 L11: 8.1133 L22: 4.2566 REMARK 3 L33: 9.4357 L12: 2.5275 REMARK 3 L13: 0.7449 L23: 4.7368 REMARK 3 S TENSOR REMARK 3 S11: -0.3004 S12: -3.2147 S13: -2.4083 REMARK 3 S21: 0.1151 S22: -0.6965 S23: 1.0947 REMARK 3 S31: 0.3348 S32: -0.6874 S33: 0.6674 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 16 THROUGH 38 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.7719 32.9924 21.2144 REMARK 3 T TENSOR REMARK 3 T11: 1.3324 T22: 2.4328 REMARK 3 T33: -0.1840 T12: 0.3874 REMARK 3 T13: -0.1717 T23: -0.2935 REMARK 3 L TENSOR REMARK 3 L11: 2.4479 L22: 0.7623 REMARK 3 L33: 4.2527 L12: 0.1070 REMARK 3 L13: -1.2003 L23: -1.5977 REMARK 3 S TENSOR REMARK 3 S11: 0.0484 S12: -0.6257 S13: 0.8648 REMARK 3 S21: 0.3221 S22: 0.0671 S23: 0.2012 REMARK 3 S31: 0.3777 S32: -0.6419 S33: 0.2395 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 39 THROUGH 65 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.9522 34.0037 18.3596 REMARK 3 T TENSOR REMARK 3 T11: 0.8759 T22: 1.4538 REMARK 3 T33: 1.0374 T12: 0.3070 REMARK 3 T13: 0.3726 T23: -0.0887 REMARK 3 L TENSOR REMARK 3 L11: 7.2575 L22: 9.4455 REMARK 3 L33: 5.7700 L12: -1.7883 REMARK 3 L13: 4.8802 L23: -6.0765 REMARK 3 S TENSOR REMARK 3 S11: -1.0116 S12: -1.4225 S13: 0.4738 REMARK 3 S21: 1.5624 S22: -0.1813 S23: -0.9422 REMARK 3 S31: -0.7128 S32: -0.6173 S33: 0.9424 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 66 THROUGH 74 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.9570 36.4778 24.6043 REMARK 3 T TENSOR REMARK 3 T11: 1.7550 T22: 2.7325 REMARK 3 T33: 1.0800 T12: 0.4194 REMARK 3 T13: -0.6384 T23: -1.8277 REMARK 3 L TENSOR REMARK 3 L11: 5.9485 L22: 1.8099 REMARK 3 L33: 3.4036 L12: -0.9360 REMARK 3 L13: -3.1000 L23: 0.8419 REMARK 3 S TENSOR REMARK 3 S11: -0.4659 S12: -1.9955 S13: 0.1335 REMARK 3 S21: 1.1874 S22: -0.0774 S23: 0.4716 REMARK 3 S31: 0.0127 S32: -0.4443 S33: -0.7915 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 75 THROUGH 84 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.8299 37.9966 21.2510 REMARK 3 T TENSOR REMARK 3 T11: 1.1224 T22: 2.7078 REMARK 3 T33: 1.2906 T12: 0.2570 REMARK 3 T13: -0.3998 T23: -0.4265 REMARK 3 L TENSOR REMARK 3 L11: 2.8318 L22: 9.5748 REMARK 3 L33: 6.4651 L12: 4.5984 REMARK 3 L13: 1.2978 L23: 4.1220 REMARK 3 S TENSOR REMARK 3 S11: 0.5034 S12: -2.5084 S13: 0.8339 REMARK 3 S21: -0.0871 S22: -0.1758 S23: -2.3968 REMARK 3 S31: -0.6955 S32: 0.3548 S33: 0.0737 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 85 THROUGH 111 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.4519 33.8687 10.9323 REMARK 3 T TENSOR REMARK 3 T11: 1.1427 T22: 1.4907 REMARK 3 T33: 0.5785 T12: 0.2798 REMARK 3 T13: -0.2484 T23: -0.4731 REMARK 3 L TENSOR REMARK 3 L11: 7.3478 L22: 4.0158 REMARK 3 L33: 6.3392 L12: -1.8093 REMARK 3 L13: 4.9778 L23: -4.3582 REMARK 3 S TENSOR REMARK 3 S11: 0.3778 S12: -0.3158 S13: 0.0385 REMARK 3 S21: 0.9506 S22: 1.7895 S23: 0.1530 REMARK 3 S31: 1.2619 S32: 1.1729 S33: -1.4226 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 112 THROUGH 130 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.6366 32.9887 17.4092 REMARK 3 T TENSOR REMARK 3 T11: 1.3298 T22: 2.4234 REMARK 3 T33: 0.9530 T12: 0.3731 REMARK 3 T13: 0.1728 T23: -0.0085 REMARK 3 L TENSOR REMARK 3 L11: 7.4235 L22: 2.2073 REMARK 3 L33: 7.9383 L12: -0.7204 REMARK 3 L13: 5.7617 L23: -3.2789 REMARK 3 S TENSOR REMARK 3 S11: -1.2603 S12: -0.7304 S13: 0.1488 REMARK 3 S21: -0.3329 S22: -0.4258 S23: -1.3256 REMARK 3 S31: 1.0796 S32: 1.1545 S33: 1.4856 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 131 THROUGH 146 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.7191 26.7377 29.0285 REMARK 3 T TENSOR REMARK 3 T11: 1.7256 T22: 2.3954 REMARK 3 T33: 1.6593 T12: 0.4688 REMARK 3 T13: -0.1746 T23: 0.4079 REMARK 3 L TENSOR REMARK 3 L11: 1.0690 L22: 0.2021 REMARK 3 L33: 0.9995 L12: -0.1008 REMARK 3 L13: -0.9984 L23: 0.2276 REMARK 3 S TENSOR REMARK 3 S11: -0.3665 S12: 0.2787 S13: -0.5931 REMARK 3 S21: 0.0371 S22: -0.6613 S23: 0.1388 REMARK 3 S31: -1.3526 S32: 0.1618 S33: 0.8998 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 216 THROUGH 230 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.9891 43.4123 -12.9914 REMARK 3 T TENSOR REMARK 3 T11: 0.9437 T22: 0.6221 REMARK 3 T33: 0.6572 T12: -0.1371 REMARK 3 T13: -0.0338 T23: 0.1973 REMARK 3 L TENSOR REMARK 3 L11: 9.5731 L22: 6.8877 REMARK 3 L33: 9.4107 L12: 3.6324 REMARK 3 L13: 5.9826 L23: 4.9134 REMARK 3 S TENSOR REMARK 3 S11: -1.1454 S12: 0.7087 S13: -0.4752 REMARK 3 S21: -1.8186 S22: 1.2788 S23: -0.0153 REMARK 3 S31: -1.1819 S32: 0.2795 S33: -0.2720 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 231 THROUGH 240 ) REMARK 3 ORIGIN FOR THE GROUP (A): -26.9929 27.8453 -7.2710 REMARK 3 T TENSOR REMARK 3 T11: 1.0360 T22: 0.9499 REMARK 3 T33: 1.9408 T12: -0.1926 REMARK 3 T13: -0.2649 T23: 0.0007 REMARK 3 L TENSOR REMARK 3 L11: 3.4965 L22: 4.4517 REMARK 3 L33: 2.0201 L12: 3.9666 REMARK 3 L13: 6.0621 L23: 6.8712 REMARK 3 S TENSOR REMARK 3 S11: 0.8652 S12: -0.1193 S13: -1.5392 REMARK 3 S21: 0.9820 S22: -0.4905 S23: -1.8791 REMARK 3 S31: 2.0828 S32: -0.8947 S33: -0.3570 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 241 THROUGH 289 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.4824 37.1423 -5.6266 REMARK 3 T TENSOR REMARK 3 T11: 0.4938 T22: 0.5675 REMARK 3 T33: 0.9321 T12: -0.0132 REMARK 3 T13: -0.0698 T23: -0.0931 REMARK 3 L TENSOR REMARK 3 L11: 4.4710 L22: 5.6513 REMARK 3 L33: 9.4504 L12: -1.9783 REMARK 3 L13: 0.2211 L23: -1.3171 REMARK 3 S TENSOR REMARK 3 S11: -0.2524 S12: -0.5842 S13: 0.2064 REMARK 3 S21: -0.4066 S22: 0.1205 S23: 0.4946 REMARK 3 S31: 0.0733 S32: -0.3498 S33: 0.1712 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 215 THROUGH 219 ) REMARK 3 ORIGIN FOR THE GROUP (A): -46.4422 26.4548 -2.8690 REMARK 3 T TENSOR REMARK 3 T11: 1.3352 T22: 0.9188 REMARK 3 T33: 1.0596 T12: 0.4401 REMARK 3 T13: 0.0893 T23: 0.2049 REMARK 3 L TENSOR REMARK 3 L11: 4.1649 L22: 2.8814 REMARK 3 L33: 2.8641 L12: 3.0608 REMARK 3 L13: 0.8415 L23: -0.6877 REMARK 3 S TENSOR REMARK 3 S11: 0.7692 S12: 0.0727 S13: 0.8232 REMARK 3 S21: -4.3521 S22: -1.2038 S23: -0.6508 REMARK 3 S31: -0.3614 S32: -0.4394 S33: 0.5868 REMARK 3 TLS GROUP : 19 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 220 THROUGH 224 ) REMARK 3 ORIGIN FOR THE GROUP (A): -52.8500 24.8592 4.2201 REMARK 3 T TENSOR REMARK 3 T11: 0.9705 T22: 1.0255 REMARK 3 T33: 1.3943 T12: 0.2209 REMARK 3 T13: 0.1121 T23: -0.0283 REMARK 3 L TENSOR REMARK 3 L11: 2.4199 L22: 2.6359 REMARK 3 L33: 3.3322 L12: -2.0731 REMARK 3 L13: -2.6698 L23: 2.8587 REMARK 3 S TENSOR REMARK 3 S11: -0.9922 S12: -1.4424 S13: 0.8652 REMARK 3 S21: 0.6099 S22: -0.0387 S23: 1.6341 REMARK 3 S31: -1.8736 S32: -2.5378 S33: 0.3508 REMARK 3 TLS GROUP : 20 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 225 THROUGH 240 ) REMARK 3 ORIGIN FOR THE GROUP (A): -51.9112 7.3415 10.7568 REMARK 3 T TENSOR REMARK 3 T11: 0.7313 T22: 0.6905 REMARK 3 T33: 0.9566 T12: -0.0323 REMARK 3 T13: -0.0216 T23: 0.1837 REMARK 3 L TENSOR REMARK 3 L11: 2.6356 L22: 2.6737 REMARK 3 L33: 7.3393 L12: 0.8513 REMARK 3 L13: 2.2445 L23: 0.4008 REMARK 3 S TENSOR REMARK 3 S11: -0.0852 S12: -0.3187 S13: -0.1491 REMARK 3 S21: 0.9275 S22: 0.4923 S23: -0.3597 REMARK 3 S31: 0.5308 S32: -1.3964 S33: -0.2304 REMARK 3 TLS GROUP : 21 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 241 THROUGH 245 ) REMARK 3 ORIGIN FOR THE GROUP (A): -38.4993 8.4372 9.6875 REMARK 3 T TENSOR REMARK 3 T11: 0.7303 T22: 0.5373 REMARK 3 T33: 0.7024 T12: -0.1465 REMARK 3 T13: 0.1344 T23: 0.2302 REMARK 3 L TENSOR REMARK 3 L11: 9.4161 L22: 4.0211 REMARK 3 L33: 4.4414 L12: -1.3707 REMARK 3 L13: -0.7044 L23: 3.6349 REMARK 3 S TENSOR REMARK 3 S11: 1.2308 S12: -1.4570 S13: 1.4723 REMARK 3 S21: -0.2254 S22: -0.0555 S23: 0.0263 REMARK 3 S31: -1.7916 S32: 0.8102 S33: -0.6599 REMARK 3 TLS GROUP : 22 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 246 THROUGH 250 ) REMARK 3 ORIGIN FOR THE GROUP (A): -46.2722 5.6449 16.5445 REMARK 3 T TENSOR REMARK 3 T11: 1.0758 T22: 0.7724 REMARK 3 T33: 0.5625 T12: -0.0013 REMARK 3 T13: -0.0246 T23: 0.3178 REMARK 3 L TENSOR REMARK 3 L11: 7.0787 L22: 1.9910 REMARK 3 L33: 6.9382 L12: -3.1383 REMARK 3 L13: -1.5759 L23: 8.3558 REMARK 3 S TENSOR REMARK 3 S11: -1.5697 S12: -1.6879 S13: 0.6464 REMARK 3 S21: 2.0761 S22: 0.2896 S23: 1.1224 REMARK 3 S31: 2.5148 S32: 0.6570 S33: 0.5182 REMARK 3 TLS GROUP : 23 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 251 THROUGH 260 ) REMARK 3 ORIGIN FOR THE GROUP (A): -50.7105 11.4162 5.5556 REMARK 3 T TENSOR REMARK 3 T11: 0.7624 T22: 0.5949 REMARK 3 T33: 0.9571 T12: -0.0616 REMARK 3 T13: -0.1068 T23: 0.1865 REMARK 3 L TENSOR REMARK 3 L11: 6.4801 L22: 7.0768 REMARK 3 L33: 4.8948 L12: 2.1042 REMARK 3 L13: 1.3959 L23: 5.8875 REMARK 3 S TENSOR REMARK 3 S11: -1.9289 S12: 0.4744 S13: -0.2571 REMARK 3 S21: 0.1518 S22: -0.3097 S23: 1.8327 REMARK 3 S31: -0.8374 S32: 1.6342 S33: 2.0608 REMARK 3 TLS GROUP : 24 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 261 THROUGH 273 ) REMARK 3 ORIGIN FOR THE GROUP (A): -43.8734 17.1818 6.3523 REMARK 3 T TENSOR REMARK 3 T11: 0.8440 T22: 0.5790 REMARK 3 T33: 0.8673 T12: 0.1116 REMARK 3 T13: -0.1655 T23: 0.1407 REMARK 3 L TENSOR REMARK 3 L11: 3.7052 L22: 4.0049 REMARK 3 L33: 7.1397 L12: 3.3680 REMARK 3 L13: -0.2269 L23: 2.3481 REMARK 3 S TENSOR REMARK 3 S11: 0.9612 S12: 0.4028 S13: 0.9118 REMARK 3 S21: 0.0824 S22: -0.5625 S23: 1.2070 REMARK 3 S31: -1.0221 S32: -0.5128 S33: -0.3016 REMARK 3 TLS GROUP : 25 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 274 THROUGH 286 ) REMARK 3 ORIGIN FOR THE GROUP (A): -45.2421 15.3868 -4.1704 REMARK 3 T TENSOR REMARK 3 T11: 0.9473 T22: 0.8052 REMARK 3 T33: 1.0334 T12: 0.1305 REMARK 3 T13: -0.1520 T23: 0.1522 REMARK 3 L TENSOR REMARK 3 L11: 1.9115 L22: 2.1554 REMARK 3 L33: 7.6204 L12: -0.1911 REMARK 3 L13: -3.1504 L23: 2.6523 REMARK 3 S TENSOR REMARK 3 S11: -0.3067 S12: 1.4466 S13: 1.8632 REMARK 3 S21: -0.2746 S22: 0.3682 S23: -0.4352 REMARK 3 S31: 0.6109 S32: -0.7689 S33: 0.0310 REMARK 3 TLS GROUP : 26 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 1 THROUGH 7 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.9473 42.1571 -11.8223 REMARK 3 T TENSOR REMARK 3 T11: 0.5174 T22: 0.6527 REMARK 3 T33: 0.8805 T12: -0.0418 REMARK 3 T13: -0.1157 T23: 0.0208 REMARK 3 L TENSOR REMARK 3 L11: 3.4176 L22: 5.2004 REMARK 3 L33: 2.1091 L12: 0.1280 REMARK 3 L13: 0.3458 L23: 1.1738 REMARK 3 S TENSOR REMARK 3 S11: -0.2508 S12: 0.1711 S13: 0.6599 REMARK 3 S21: -0.6267 S22: 0.4418 S23: 0.0902 REMARK 3 S31: 0.6653 S32: -0.0391 S33: 0.1722 REMARK 3 TLS GROUP : 27 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 8 THROUGH 22 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.0775 40.9812 -11.9204 REMARK 3 T TENSOR REMARK 3 T11: 0.7385 T22: 0.8618 REMARK 3 T33: 0.5734 T12: 0.1489 REMARK 3 T13: 0.0739 T23: -0.0632 REMARK 3 L TENSOR REMARK 3 L11: 6.1303 L22: 6.0838 REMARK 3 L33: 2.4154 L12: -1.1420 REMARK 3 L13: 1.7275 L23: 0.7487 REMARK 3 S TENSOR REMARK 3 S11: -0.4339 S12: -0.0694 S13: -0.7816 REMARK 3 S21: -0.6269 S22: -0.2173 S23: -0.2486 REMARK 3 S31: 1.2721 S32: -0.2963 S33: 0.7808 REMARK 3 TLS GROUP : 28 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 23 THROUGH 34 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.4140 38.4981 -9.3043 REMARK 3 T TENSOR REMARK 3 T11: 0.7678 T22: 0.6129 REMARK 3 T33: 0.8645 T12: -0.0638 REMARK 3 T13: -0.0755 T23: 0.0218 REMARK 3 L TENSOR REMARK 3 L11: 2.2693 L22: 7.8142 REMARK 3 L33: 4.2903 L12: -4.1781 REMARK 3 L13: 3.1032 L23: -5.7607 REMARK 3 S TENSOR REMARK 3 S11: 0.2532 S12: -0.6743 S13: 0.5523 REMARK 3 S21: -1.0646 S22: 0.3891 S23: 0.4946 REMARK 3 S31: 2.0251 S32: -0.4408 S33: -0.7636 REMARK 3 TLS GROUP : 29 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 35 THROUGH 44 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.0768 42.4680 -1.8819 REMARK 3 T TENSOR REMARK 3 T11: 0.4993 T22: 0.7693 REMARK 3 T33: 0.4990 T12: -0.0009 REMARK 3 T13: -0.0245 T23: 0.0593 REMARK 3 L TENSOR REMARK 3 L11: 9.4609 L22: 2.1032 REMARK 3 L33: 7.7120 L12: 4.0220 REMARK 3 L13: 4.1366 L23: 3.1603 REMARK 3 S TENSOR REMARK 3 S11: -0.4280 S12: -1.6023 S13: 0.3804 REMARK 3 S21: 0.2560 S22: 0.7793 S23: 0.8378 REMARK 3 S31: 0.6459 S32: -0.5819 S33: -0.2246 REMARK 3 TLS GROUP : 30 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 45 THROUGH 56 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.1757 52.2862 -10.1349 REMARK 3 T TENSOR REMARK 3 T11: 0.7470 T22: 0.8271 REMARK 3 T33: 0.8068 T12: -0.1895 REMARK 3 T13: 0.1074 T23: 0.0950 REMARK 3 L TENSOR REMARK 3 L11: 4.1548 L22: 2.0031 REMARK 3 L33: 5.4619 L12: 6.4448 REMARK 3 L13: 4.7644 L23: 7.4277 REMARK 3 S TENSOR REMARK 3 S11: -1.1097 S12: -0.4188 S13: 0.4054 REMARK 3 S21: -0.5673 S22: -0.2550 S23: 1.3313 REMARK 3 S31: -2.5798 S32: 1.2577 S33: 1.0415 REMARK 3 TLS GROUP : 31 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 57 THROUGH 76 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.3720 46.9462 -7.4876 REMARK 3 T TENSOR REMARK 3 T11: 0.6415 T22: 0.6604 REMARK 3 T33: 0.6958 T12: 0.0110 REMARK 3 T13: -0.0484 T23: -0.1239 REMARK 3 L TENSOR REMARK 3 L11: 3.9851 L22: 2.3955 REMARK 3 L33: 6.3911 L12: -1.3372 REMARK 3 L13: 3.2139 L23: -1.2142 REMARK 3 S TENSOR REMARK 3 S11: -0.4021 S12: -0.7536 S13: -0.0100 REMARK 3 S21: -0.3792 S22: -0.1001 S23: 0.5958 REMARK 3 S31: -0.2551 S32: -0.6774 S33: 0.2981 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5ZBU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-FEB-18. REMARK 100 THE DEPOSITION ID IS D_1300006823. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-MAR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : RRCAT INDUS-2 REMARK 200 BEAMLINE : PX-BL21 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97947 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10704 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.200 REMARK 200 RESOLUTION RANGE LOW (A) : 48.710 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.08900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.70200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2ESK, 1UBQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.07 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.74 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M MES MONOHYDRATE, 14% PEG 4000, PH REMARK 280 6.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 52.87000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B 147 REMARK 465 MET A 215 REMARK 465 GLY A 290 REMARK 465 PRO D 287 REMARK 465 SER D 288 REMARK 465 GLN D 289 REMARK 465 GLY D 290 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS B 85 C GLY E 76 1.40 REMARK 500 NH2 ARG B 5 OE2 GLU B 9 2.10 REMARK 500 OG SER C 94 O PRO D 279 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG C 90 -83.99 -112.90 REMARK 500 ARG B 90 -59.65 -129.91 REMARK 500 SER A 259 -5.60 90.98 REMARK 500 THR A 274 -71.49 -139.20 REMARK 500 ASP D 238 -52.25 -132.40 REMARK 500 LEU D 244 -0.68 66.60 REMARK 500 SER D 259 -0.94 79.31 REMARK 500 THR D 274 -62.93 -124.48 REMARK 500 LYS D 282 13.72 57.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 240 SG REMARK 620 2 CYS A 243 SG 110.0 REMARK 620 3 HIS A 263 ND1 110.0 110.0 REMARK 620 4 CYS A 266 SG 117.8 98.3 110.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1002 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 258 SG REMARK 620 2 HIS A 260 ND1 110.0 REMARK 620 3 CYS A 278 SG 111.2 110.0 REMARK 620 4 CYS A 281 SG 99.5 110.0 115.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D1001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS D 240 SG REMARK 620 2 CYS D 243 SG 108.4 REMARK 620 3 HIS D 263 ND1 110.0 110.0 REMARK 620 4 CYS D 266 SG 97.9 119.7 110.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D1002 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS D 258 SG REMARK 620 2 HIS D 260 ND1 110.1 REMARK 620 3 CYS D 278 SG 125.5 110.0 REMARK 620 4 CYS D 281 SG 101.5 110.0 97.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN D 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN D 1002 DBREF 5ZBU C 1 147 UNP P62837 UB2D2_HUMAN 1 147 DBREF 5ZBU B 1 147 UNP P62837 UB2D2_HUMAN 1 147 DBREF 5ZBU A 216 290 UNP O43567 RNF13_HUMAN 216 290 DBREF 5ZBU D 216 290 UNP O43567 RNF13_HUMAN 216 290 DBREF 5ZBU E 1 76 UNP P0CG47 UBB_HUMAN 1 76 SEQADV 5ZBU GLY C 0 UNP P62837 EXPRESSION TAG SEQADV 5ZBU LYS C 85 UNP P62837 CYS 85 ENGINEERED MUTATION SEQADV 5ZBU GLY B 0 UNP P62837 EXPRESSION TAG SEQADV 5ZBU LYS B 85 UNP P62837 CYS 85 ENGINEERED MUTATION SEQADV 5ZBU MET A 215 UNP O43567 EXPRESSION TAG SEQADV 5ZBU MET D 215 UNP O43567 EXPRESSION TAG SEQRES 1 C 148 GLY MET ALA LEU LYS ARG ILE HIS LYS GLU LEU ASN ASP SEQRES 2 C 148 LEU ALA ARG ASP PRO PRO ALA GLN CYS SER ALA GLY PRO SEQRES 3 C 148 VAL GLY ASP ASP MET PHE HIS TRP GLN ALA THR ILE MET SEQRES 4 C 148 GLY PRO ASN ASP SER PRO TYR GLN GLY GLY VAL PHE PHE SEQRES 5 C 148 LEU THR ILE HIS PHE PRO THR ASP TYR PRO PHE LYS PRO SEQRES 6 C 148 PRO LYS VAL ALA PHE THR THR ARG ILE TYR HIS PRO ASN SEQRES 7 C 148 ILE ASN SER ASN GLY SER ILE LYS LEU ASP ILE LEU ARG SEQRES 8 C 148 SER GLN TRP SER PRO ALA LEU THR ILE SER LYS VAL LEU SEQRES 9 C 148 LEU SER ILE CYS SER LEU LEU CYS ASP PRO ASN PRO ASP SEQRES 10 C 148 ASP PRO LEU VAL PRO GLU ILE ALA ARG ILE TYR LYS THR SEQRES 11 C 148 ASP ARG GLU LYS TYR ASN ARG ILE ALA ARG GLU TRP THR SEQRES 12 C 148 GLN LYS TYR ALA MET SEQRES 1 B 148 GLY MET ALA LEU LYS ARG ILE HIS LYS GLU LEU ASN ASP SEQRES 2 B 148 LEU ALA ARG ASP PRO PRO ALA GLN CYS SER ALA GLY PRO SEQRES 3 B 148 VAL GLY ASP ASP MET PHE HIS TRP GLN ALA THR ILE MET SEQRES 4 B 148 GLY PRO ASN ASP SER PRO TYR GLN GLY GLY VAL PHE PHE SEQRES 5 B 148 LEU THR ILE HIS PHE PRO THR ASP TYR PRO PHE LYS PRO SEQRES 6 B 148 PRO LYS VAL ALA PHE THR THR ARG ILE TYR HIS PRO ASN SEQRES 7 B 148 ILE ASN SER ASN GLY SER ILE LYS LEU ASP ILE LEU ARG SEQRES 8 B 148 SER GLN TRP SER PRO ALA LEU THR ILE SER LYS VAL LEU SEQRES 9 B 148 LEU SER ILE CYS SER LEU LEU CYS ASP PRO ASN PRO ASP SEQRES 10 B 148 ASP PRO LEU VAL PRO GLU ILE ALA ARG ILE TYR LYS THR SEQRES 11 B 148 ASP ARG GLU LYS TYR ASN ARG ILE ALA ARG GLU TRP THR SEQRES 12 B 148 GLN LYS TYR ALA MET SEQRES 1 A 76 MET ASN ARG LEU ARG LYS ASP GLN LEU LYS LYS LEU PRO SEQRES 2 A 76 VAL HIS LYS PHE LYS LYS GLY ASP GLU TYR ASP VAL CYS SEQRES 3 A 76 ALA ILE CYS LEU ASP GLU TYR GLU ASP GLY ASP LYS LEU SEQRES 4 A 76 ARG ILE LEU PRO CYS SER HIS ALA TYR HIS CYS LYS CYS SEQRES 5 A 76 VAL ASP PRO TRP LEU THR LYS THR LYS LYS THR CYS PRO SEQRES 6 A 76 VAL CYS LYS GLN LYS VAL VAL PRO SER GLN GLY SEQRES 1 D 76 MET ASN ARG LEU ARG LYS ASP GLN LEU LYS LYS LEU PRO SEQRES 2 D 76 VAL HIS LYS PHE LYS LYS GLY ASP GLU TYR ASP VAL CYS SEQRES 3 D 76 ALA ILE CYS LEU ASP GLU TYR GLU ASP GLY ASP LYS LEU SEQRES 4 D 76 ARG ILE LEU PRO CYS SER HIS ALA TYR HIS CYS LYS CYS SEQRES 5 D 76 VAL ASP PRO TRP LEU THR LYS THR LYS LYS THR CYS PRO SEQRES 6 D 76 VAL CYS LYS GLN LYS VAL VAL PRO SER GLN GLY SEQRES 1 E 76 MET GLN ILE PHE VAL LYS THR LEU THR GLY LYS THR ILE SEQRES 2 E 76 THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU ASN VAL SEQRES 3 E 76 LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO PRO ASP SEQRES 4 E 76 GLN GLN ARG LEU ILE PHE ALA GLY LYS GLN LEU GLU ASP SEQRES 5 E 76 GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS GLU SER SEQRES 6 E 76 THR LEU HIS LEU VAL LEU ARG LEU ARG GLY GLY HET ZN A1001 1 HET ZN A1002 1 HET ZN D1001 1 HET ZN D1002 1 HETNAM ZN ZINC ION FORMUL 6 ZN 4(ZN 2+) FORMUL 10 HOH *9(H2 O) HELIX 1 AA1 GLY C 0 ASP C 16 1 17 HELIX 2 AA2 LEU C 86 ARG C 90 5 5 HELIX 3 AA3 THR C 98 ASP C 112 1 15 HELIX 4 AA4 VAL C 120 ASP C 130 1 11 HELIX 5 AA5 ASP C 130 ALA C 146 1 17 HELIX 6 AA6 MET B 1 ASP B 16 1 16 HELIX 7 AA7 LEU B 86 ARG B 90 5 5 HELIX 8 AA8 THR B 98 ASP B 112 1 15 HELIX 9 AA9 VAL B 120 ASP B 130 1 11 HELIX 10 AB1 ASP B 130 ALA B 146 1 17 HELIX 11 AB2 ARG A 219 LYS A 224 1 6 HELIX 12 AB3 CYS A 264 THR A 274 1 11 HELIX 13 AB4 ARG D 219 LYS D 225 1 7 HELIX 14 AB5 CYS D 264 THR D 274 1 11 HELIX 15 AB6 THR E 22 GLY E 35 1 14 HELIX 16 AB7 PRO E 37 ASP E 39 5 3 HELIX 17 AB8 LEU E 56 ASN E 60 5 5 SHEET 1 AA1 4 CYS C 21 PRO C 25 0 SHEET 2 AA1 4 HIS C 32 MET C 38 -1 O GLN C 34 N GLY C 24 SHEET 3 AA1 4 VAL C 49 HIS C 55 -1 O PHE C 50 N ILE C 37 SHEET 4 AA1 4 LYS C 66 PHE C 69 -1 O LYS C 66 N HIS C 55 SHEET 1 AA2 4 CYS B 21 PRO B 25 0 SHEET 2 AA2 4 HIS B 32 MET B 38 -1 O GLN B 34 N GLY B 24 SHEET 3 AA2 4 VAL B 49 HIS B 55 -1 O PHE B 50 N ILE B 37 SHEET 4 AA2 4 LYS B 66 PHE B 69 -1 O ALA B 68 N THR B 53 SHEET 1 AA3 3 VAL A 228 LYS A 230 0 SHEET 2 AA3 3 LYS A 252 ILE A 255 -1 O LEU A 253 N HIS A 229 SHEET 3 AA3 3 ALA A 261 HIS A 263 -1 O TYR A 262 N ARG A 254 SHEET 1 AA4 3 VAL D 228 LYS D 230 0 SHEET 2 AA4 3 LYS D 252 ILE D 255 -1 O LEU D 253 N HIS D 229 SHEET 3 AA4 3 ALA D 261 HIS D 263 -1 O TYR D 262 N ARG D 254 SHEET 1 AA5 5 THR E 12 GLU E 16 0 SHEET 2 AA5 5 GLN E 2 THR E 7 -1 N ILE E 3 O LEU E 15 SHEET 3 AA5 5 THR E 66 LEU E 71 1 O LEU E 67 N LYS E 6 SHEET 4 AA5 5 GLN E 41 PHE E 45 -1 N ARG E 42 O VAL E 70 SHEET 5 AA5 5 LYS E 48 GLN E 49 -1 O LYS E 48 N PHE E 45 LINK SG CYS A 240 ZN ZN A1001 1555 1555 2.28 LINK SG CYS A 243 ZN ZN A1001 1555 1555 2.26 LINK SG CYS A 258 ZN ZN A1002 1555 1555 2.24 LINK ND1 HIS A 260 ZN ZN A1002 1555 1555 2.08 LINK ND1 HIS A 263 ZN ZN A1001 1555 1555 2.10 LINK SG CYS A 266 ZN ZN A1001 1555 1555 2.39 LINK SG CYS A 278 ZN ZN A1002 1555 1555 2.31 LINK SG CYS A 281 ZN ZN A1002 1555 1555 2.26 LINK SG CYS D 240 ZN ZN D1001 1555 1555 2.40 LINK SG CYS D 243 ZN ZN D1001 1555 1555 2.32 LINK SG CYS D 258 ZN ZN D1002 1555 1555 2.21 LINK ND1 HIS D 260 ZN ZN D1002 1555 1555 1.96 LINK ND1 HIS D 263 ZN ZN D1001 1555 1555 2.19 LINK SG CYS D 266 ZN ZN D1001 1555 1555 2.41 LINK SG CYS D 278 ZN ZN D1002 1555 1555 2.29 LINK SG CYS D 281 ZN ZN D1002 1555 1555 2.28 CISPEP 1 TYR C 60 PRO C 61 0 8.41 CISPEP 2 TYR B 60 PRO B 61 0 8.00 SITE 1 AC1 4 CYS A 240 CYS A 243 HIS A 263 CYS A 266 SITE 1 AC2 4 CYS A 258 HIS A 260 CYS A 278 CYS A 281 SITE 1 AC3 4 CYS D 240 CYS D 243 HIS D 263 CYS D 266 SITE 1 AC4 4 CYS D 258 HIS D 260 CYS D 278 CYS D 281 CRYST1 56.559 105.740 60.790 90.00 115.49 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017681 0.000000 0.008429 0.00000 SCALE2 0.000000 0.009457 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018224 0.00000