HEADER HYDROLASE INHIBITOR 14-FEB-18 5ZC1 TITLE X-RAY DIFFRACTION ANALYSIS OF THE CSSTEFIN-1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYSTATIN-1; COMPND 3 CHAIN: A, B, C, D, E, F; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLONORCHIS SINENSIS; SOURCE 3 ORGANISM_COMMON: CHINESE LIVER FLUKE; SOURCE 4 ORGANISM_TAXID: 79923; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CSSTEFIN-1, CYSTEINE PROTEASE INHIBITOR, IMMUNE MODULATOR, CSCF, KEYWDS 2 HYDROLASE INHIBITOR EXPDTA X-RAY DIFFRACTION AUTHOR S.B.JANG,S.Y.PARK REVDAT 1 26-DEC-18 5ZC1 0 JRNL AUTH S.Y.PARK,M.S.JEONG,S.A.PARK,S.C.HA,B.K.NA,S.B.JANG JRNL TITL STRUCTURAL BASIS OF THE CYSTEIN PROTEASE INHIBITOR JRNL TITL 2 CLONORCHIS SINENSIS STEFIN-1. JRNL REF BIOCHEM. BIOPHYS. RES. V. 498 9 2018 JRNL REF 2 COMMUN. JRNL REFN ESSN 1090-2104 JRNL PMID 29499196 JRNL DOI 10.1016/J.BBRC.2018.02.196 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.51 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.359 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 3 NUMBER OF REFLECTIONS : 30576 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.222 REMARK 3 R VALUE (WORKING SET) : 0.218 REMARK 3 FREE R VALUE : 0.286 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.541 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 30.5159 - 5.5396 0.92 2005 140 0.1939 0.2535 REMARK 3 2 5.5396 - 4.4011 0.99 2084 146 0.1681 0.2216 REMARK 3 3 4.4011 - 3.8460 0.99 2087 146 0.1800 0.2191 REMARK 3 4 3.8460 - 3.4949 0.99 2072 145 0.2164 0.2901 REMARK 3 5 3.4949 - 3.2447 0.99 2052 143 0.2434 0.3268 REMARK 3 6 3.2447 - 3.0536 0.98 2070 146 0.2387 0.3111 REMARK 3 7 3.0536 - 2.9008 0.99 2062 144 0.2614 0.3332 REMARK 3 8 2.9008 - 2.7746 0.98 2070 145 0.2631 0.3216 REMARK 3 9 2.7746 - 2.6679 0.98 2042 143 0.2576 0.3642 REMARK 3 10 2.6679 - 2.5759 0.98 2027 141 0.2471 0.3421 REMARK 3 11 2.5759 - 2.4954 0.98 2016 142 0.2633 0.3616 REMARK 3 12 2.4954 - 2.4241 0.98 2054 144 0.2636 0.3761 REMARK 3 13 2.4241 - 2.3603 0.98 2030 142 0.2872 0.3669 REMARK 3 14 2.3603 - 2.3027 0.92 1905 133 0.3082 0.4349 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.380 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 33.193 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 44.03 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 57.62 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 4700 REMARK 3 ANGLE : 1.185 6398 REMARK 3 CHIRALITY : 0.063 748 REMARK 3 PLANARITY : 0.008 815 REMARK 3 DIHEDRAL : 4.475 2828 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5ZC1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-FEB-18. REMARK 100 THE DEPOSITION ID IS D_1300006788. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-MAY-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 7A (6B, 6C1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.987, 0.97911, 0.97926, 0.97142 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31360 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.04800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.34 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.23300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.94 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM IMIDAZOLE (PH 8.0), 2500 MM REMARK 280 SODIUM CHLORIDE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 28.49800 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4, 5, 6 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 5 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 6 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 SER A 3 REMARK 465 THR A 4 REMARK 465 ARG A 5 REMARK 465 LEU A 6 REMARK 465 ALA A 7 REMARK 465 PHE A 8 REMARK 465 ALA A 9 REMARK 465 TRP A 10 REMARK 465 ARG A 11 REMARK 465 GLU A 12 REMARK 465 LEU A 13 REMARK 465 PHE A 14 REMARK 465 SER A 15 REMARK 465 VAL A 16 REMARK 465 PHE A 17 REMARK 465 CYS A 18 REMARK 465 TYR A 19 REMARK 465 LEU A 20 REMARK 465 LEU A 21 REMARK 465 TYR A 22 REMARK 465 THR A 23 REMARK 465 SER A 24 REMARK 465 ASP A 25 REMARK 465 ILE A 26 REMARK 465 LEU A 27 REMARK 465 ALA A 28 REMARK 465 GLU A 29 REMARK 465 ARG A 30 REMARK 465 HIS A 31 REMARK 465 ASN A 32 REMARK 465 ASN A 33 REMARK 465 HIS A 34 REMARK 465 PRO A 35 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 SER B 3 REMARK 465 THR B 4 REMARK 465 ARG B 5 REMARK 465 LEU B 6 REMARK 465 ALA B 7 REMARK 465 PHE B 8 REMARK 465 ALA B 9 REMARK 465 TRP B 10 REMARK 465 ARG B 11 REMARK 465 GLU B 12 REMARK 465 LEU B 13 REMARK 465 PHE B 14 REMARK 465 SER B 15 REMARK 465 VAL B 16 REMARK 465 PHE B 17 REMARK 465 CYS B 18 REMARK 465 TYR B 19 REMARK 465 LEU B 20 REMARK 465 LEU B 21 REMARK 465 TYR B 22 REMARK 465 THR B 23 REMARK 465 SER B 24 REMARK 465 ASP B 25 REMARK 465 ILE B 26 REMARK 465 LEU B 27 REMARK 465 ALA B 28 REMARK 465 GLU B 29 REMARK 465 ARG B 30 REMARK 465 HIS B 31 REMARK 465 ASN B 32 REMARK 465 ASN B 33 REMARK 465 HIS B 34 REMARK 465 PRO B 35 REMARK 465 MET C 1 REMARK 465 THR C 2 REMARK 465 SER C 3 REMARK 465 THR C 4 REMARK 465 ARG C 5 REMARK 465 LEU C 6 REMARK 465 ALA C 7 REMARK 465 PHE C 8 REMARK 465 ALA C 9 REMARK 465 TRP C 10 REMARK 465 ARG C 11 REMARK 465 GLU C 12 REMARK 465 LEU C 13 REMARK 465 PHE C 14 REMARK 465 SER C 15 REMARK 465 VAL C 16 REMARK 465 PHE C 17 REMARK 465 CYS C 18 REMARK 465 TYR C 19 REMARK 465 LEU C 20 REMARK 465 LEU C 21 REMARK 465 TYR C 22 REMARK 465 THR C 23 REMARK 465 SER C 24 REMARK 465 ASP C 25 REMARK 465 ILE C 26 REMARK 465 LEU C 27 REMARK 465 ALA C 28 REMARK 465 GLU C 29 REMARK 465 ARG C 30 REMARK 465 HIS C 31 REMARK 465 ASN C 32 REMARK 465 ASN C 33 REMARK 465 HIS C 34 REMARK 465 PRO C 35 REMARK 465 VAL C 36 REMARK 465 MET D 1 REMARK 465 THR D 2 REMARK 465 SER D 3 REMARK 465 THR D 4 REMARK 465 ARG D 5 REMARK 465 LEU D 6 REMARK 465 ALA D 7 REMARK 465 PHE D 8 REMARK 465 ALA D 9 REMARK 465 TRP D 10 REMARK 465 ARG D 11 REMARK 465 GLU D 12 REMARK 465 LEU D 13 REMARK 465 PHE D 14 REMARK 465 SER D 15 REMARK 465 VAL D 16 REMARK 465 PHE D 17 REMARK 465 CYS D 18 REMARK 465 TYR D 19 REMARK 465 LEU D 20 REMARK 465 LEU D 21 REMARK 465 TYR D 22 REMARK 465 THR D 23 REMARK 465 SER D 24 REMARK 465 ASP D 25 REMARK 465 ILE D 26 REMARK 465 LEU D 27 REMARK 465 ALA D 28 REMARK 465 GLU D 29 REMARK 465 ARG D 30 REMARK 465 HIS D 31 REMARK 465 ASN D 32 REMARK 465 ASN D 33 REMARK 465 HIS D 34 REMARK 465 PRO D 35 REMARK 465 VAL D 36 REMARK 465 MET D 37 REMARK 465 PRO D 38 REMARK 465 MET E 1 REMARK 465 THR E 2 REMARK 465 SER E 3 REMARK 465 THR E 4 REMARK 465 ARG E 5 REMARK 465 LEU E 6 REMARK 465 ALA E 7 REMARK 465 PHE E 8 REMARK 465 ALA E 9 REMARK 465 TRP E 10 REMARK 465 ARG E 11 REMARK 465 GLU E 12 REMARK 465 LEU E 13 REMARK 465 PHE E 14 REMARK 465 SER E 15 REMARK 465 VAL E 16 REMARK 465 PHE E 17 REMARK 465 CYS E 18 REMARK 465 TYR E 19 REMARK 465 LEU E 20 REMARK 465 LEU E 21 REMARK 465 TYR E 22 REMARK 465 THR E 23 REMARK 465 SER E 24 REMARK 465 ASP E 25 REMARK 465 ILE E 26 REMARK 465 LEU E 27 REMARK 465 ALA E 28 REMARK 465 GLU E 29 REMARK 465 ARG E 30 REMARK 465 HIS E 31 REMARK 465 ASN E 32 REMARK 465 ASN E 33 REMARK 465 HIS E 34 REMARK 465 PRO E 35 REMARK 465 VAL E 36 REMARK 465 MET E 37 REMARK 465 PRO E 38 REMARK 465 MET F 1 REMARK 465 THR F 2 REMARK 465 SER F 3 REMARK 465 THR F 4 REMARK 465 ARG F 5 REMARK 465 LEU F 6 REMARK 465 ALA F 7 REMARK 465 PHE F 8 REMARK 465 ALA F 9 REMARK 465 TRP F 10 REMARK 465 ARG F 11 REMARK 465 GLU F 12 REMARK 465 LEU F 13 REMARK 465 PHE F 14 REMARK 465 SER F 15 REMARK 465 VAL F 16 REMARK 465 PHE F 17 REMARK 465 CYS F 18 REMARK 465 TYR F 19 REMARK 465 LEU F 20 REMARK 465 LEU F 21 REMARK 465 TYR F 22 REMARK 465 THR F 23 REMARK 465 SER F 24 REMARK 465 ASP F 25 REMARK 465 ILE F 26 REMARK 465 LEU F 27 REMARK 465 ALA F 28 REMARK 465 GLU F 29 REMARK 465 ARG F 30 REMARK 465 HIS F 31 REMARK 465 ASN F 32 REMARK 465 ASN F 33 REMARK 465 HIS F 34 REMARK 465 PRO F 35 REMARK 465 VAL F 36 REMARK 465 MET F 37 REMARK 465 PRO F 38 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLY E 116 O HOH E 201 1.99 REMARK 500 O SER C 64 O HOH C 201 2.08 REMARK 500 OE2 GLU F 119 O HOH F 201 2.09 REMARK 500 OE1 GLU C 119 O HOH C 202 2.13 REMARK 500 O ASN B 98 O HOH B 201 2.16 REMARK 500 ND1 HIS C 68 O HOH C 201 2.16 REMARK 500 NZ LYS C 94 O THR C 128 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 99 24.34 48.15 REMARK 500 SER B 71 136.68 173.76 REMARK 500 VAL B 86 -152.34 -125.21 REMARK 500 ASN B 98 -138.15 47.06 REMARK 500 ASP B 100 14.61 -150.01 REMARK 500 CYS B 113 5.24 -69.38 REMARK 500 SER C 64 -16.68 -141.74 REMARK 500 ALA C 76 104.95 -162.87 REMARK 500 VAL C 86 -143.23 -132.19 REMARK 500 VAL C 97 -76.85 -69.30 REMARK 500 ASN C 99 15.93 -168.79 REMARK 500 ASP C 100 80.22 -179.37 REMARK 500 ASP C 129 1.21 -64.90 REMARK 500 SER D 44 -164.67 -77.64 REMARK 500 ILE D 48 144.70 -24.65 REMARK 500 ALA D 51 -75.81 -63.05 REMARK 500 ASP D 52 0.59 -65.84 REMARK 500 PRO D 73 -156.33 -116.92 REMARK 500 ALA D 76 52.61 -118.36 REMARK 500 VAL D 79 -99.14 -112.23 REMARK 500 VAL D 81 -176.67 -69.42 REMARK 500 VAL D 86 -157.45 -128.60 REMARK 500 MET D 125 -66.51 -97.04 REMARK 500 THR D 130 40.85 -82.99 REMARK 500 VAL E 86 -149.97 -124.72 REMARK 500 ASP E 100 -35.58 -153.80 REMARK 500 VAL F 86 -151.25 -144.44 REMARK 500 ASN F 98 -134.86 57.96 REMARK 500 ASP F 100 -99.41 -120.75 REMARK 500 ASN F 126 31.95 -87.47 REMARK 500 LEU F 133 83.67 -67.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASN C 99 ASP C 100 149.98 REMARK 500 ASP C 100 HIS C 101 135.91 REMARK 500 CYS E 40 GLY E 41 139.12 REMARK 500 ASN F 99 ASP F 100 -142.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 220 DISTANCE = 7.67 ANGSTROMS REMARK 525 HOH B 232 DISTANCE = 6.26 ANGSTROMS REMARK 525 HOH B 233 DISTANCE = 6.83 ANGSTROMS REMARK 525 HOH B 234 DISTANCE = 7.22 ANGSTROMS REMARK 525 HOH B 235 DISTANCE = 7.71 ANGSTROMS REMARK 525 HOH C 219 DISTANCE = 7.00 ANGSTROMS REMARK 525 HOH C 220 DISTANCE = 7.89 ANGSTROMS REMARK 525 HOH E 235 DISTANCE = 5.87 ANGSTROMS REMARK 525 HOH E 236 DISTANCE = 6.31 ANGSTROMS REMARK 525 HOH E 237 DISTANCE = 6.36 ANGSTROMS REMARK 525 HOH F 224 DISTANCE = 6.76 ANGSTROMS REMARK 525 HOH F 225 DISTANCE = 7.17 ANGSTROMS REMARK 525 HOH F 226 DISTANCE = 7.69 ANGSTROMS DBREF 5ZC1 A 1 136 UNP A6YID9 A6YID9_CLOSI 1 136 DBREF 5ZC1 B 1 136 UNP A6YID9 A6YID9_CLOSI 1 136 DBREF 5ZC1 C 1 136 UNP A6YID9 A6YID9_CLOSI 1 136 DBREF 5ZC1 D 1 136 UNP A6YID9 A6YID9_CLOSI 1 136 DBREF 5ZC1 E 1 136 UNP A6YID9 A6YID9_CLOSI 1 136 DBREF 5ZC1 F 1 136 UNP A6YID9 A6YID9_CLOSI 1 136 SEQRES 1 A 136 MET THR SER THR ARG LEU ALA PHE ALA TRP ARG GLU LEU SEQRES 2 A 136 PHE SER VAL PHE CYS TYR LEU LEU TYR THR SER ASP ILE SEQRES 3 A 136 LEU ALA GLU ARG HIS ASN ASN HIS PRO VAL MET PRO ILE SEQRES 4 A 136 CYS GLY GLY ILE SER ALA ALA ARG ILE PRO THR ALA ASP SEQRES 5 A 136 GLU LYS LYS LYS LEU GLU PRO VAL LEU LEU GLN SER LEU SEQRES 6 A 136 TYR ALA HIS LEU GLY SER LYS PRO THR SER ALA GLU VAL SEQRES 7 A 136 VAL LEU VAL ALA THR GLN VAL VAL ALA GLY THR ASN TYR SEQRES 8 A 136 PHE ALA LYS VAL LYS VAL ASN ASN ASP HIS TYR ILE HIS SEQRES 9 A 136 THR ARG VAL TYR GLU GLN LEU PRO CYS TYR GLY GLY ALA SEQRES 10 A 136 LEU GLU LEU HIS SER VAL GLN MET ASN LYS THR ASP THR SEQRES 11 A 136 ASP PRO LEU ASP TYR PHE SEQRES 1 B 136 MET THR SER THR ARG LEU ALA PHE ALA TRP ARG GLU LEU SEQRES 2 B 136 PHE SER VAL PHE CYS TYR LEU LEU TYR THR SER ASP ILE SEQRES 3 B 136 LEU ALA GLU ARG HIS ASN ASN HIS PRO VAL MET PRO ILE SEQRES 4 B 136 CYS GLY GLY ILE SER ALA ALA ARG ILE PRO THR ALA ASP SEQRES 5 B 136 GLU LYS LYS LYS LEU GLU PRO VAL LEU LEU GLN SER LEU SEQRES 6 B 136 TYR ALA HIS LEU GLY SER LYS PRO THR SER ALA GLU VAL SEQRES 7 B 136 VAL LEU VAL ALA THR GLN VAL VAL ALA GLY THR ASN TYR SEQRES 8 B 136 PHE ALA LYS VAL LYS VAL ASN ASN ASP HIS TYR ILE HIS SEQRES 9 B 136 THR ARG VAL TYR GLU GLN LEU PRO CYS TYR GLY GLY ALA SEQRES 10 B 136 LEU GLU LEU HIS SER VAL GLN MET ASN LYS THR ASP THR SEQRES 11 B 136 ASP PRO LEU ASP TYR PHE SEQRES 1 C 136 MET THR SER THR ARG LEU ALA PHE ALA TRP ARG GLU LEU SEQRES 2 C 136 PHE SER VAL PHE CYS TYR LEU LEU TYR THR SER ASP ILE SEQRES 3 C 136 LEU ALA GLU ARG HIS ASN ASN HIS PRO VAL MET PRO ILE SEQRES 4 C 136 CYS GLY GLY ILE SER ALA ALA ARG ILE PRO THR ALA ASP SEQRES 5 C 136 GLU LYS LYS LYS LEU GLU PRO VAL LEU LEU GLN SER LEU SEQRES 6 C 136 TYR ALA HIS LEU GLY SER LYS PRO THR SER ALA GLU VAL SEQRES 7 C 136 VAL LEU VAL ALA THR GLN VAL VAL ALA GLY THR ASN TYR SEQRES 8 C 136 PHE ALA LYS VAL LYS VAL ASN ASN ASP HIS TYR ILE HIS SEQRES 9 C 136 THR ARG VAL TYR GLU GLN LEU PRO CYS TYR GLY GLY ALA SEQRES 10 C 136 LEU GLU LEU HIS SER VAL GLN MET ASN LYS THR ASP THR SEQRES 11 C 136 ASP PRO LEU ASP TYR PHE SEQRES 1 D 136 MET THR SER THR ARG LEU ALA PHE ALA TRP ARG GLU LEU SEQRES 2 D 136 PHE SER VAL PHE CYS TYR LEU LEU TYR THR SER ASP ILE SEQRES 3 D 136 LEU ALA GLU ARG HIS ASN ASN HIS PRO VAL MET PRO ILE SEQRES 4 D 136 CYS GLY GLY ILE SER ALA ALA ARG ILE PRO THR ALA ASP SEQRES 5 D 136 GLU LYS LYS LYS LEU GLU PRO VAL LEU LEU GLN SER LEU SEQRES 6 D 136 TYR ALA HIS LEU GLY SER LYS PRO THR SER ALA GLU VAL SEQRES 7 D 136 VAL LEU VAL ALA THR GLN VAL VAL ALA GLY THR ASN TYR SEQRES 8 D 136 PHE ALA LYS VAL LYS VAL ASN ASN ASP HIS TYR ILE HIS SEQRES 9 D 136 THR ARG VAL TYR GLU GLN LEU PRO CYS TYR GLY GLY ALA SEQRES 10 D 136 LEU GLU LEU HIS SER VAL GLN MET ASN LYS THR ASP THR SEQRES 11 D 136 ASP PRO LEU ASP TYR PHE SEQRES 1 E 136 MET THR SER THR ARG LEU ALA PHE ALA TRP ARG GLU LEU SEQRES 2 E 136 PHE SER VAL PHE CYS TYR LEU LEU TYR THR SER ASP ILE SEQRES 3 E 136 LEU ALA GLU ARG HIS ASN ASN HIS PRO VAL MET PRO ILE SEQRES 4 E 136 CYS GLY GLY ILE SER ALA ALA ARG ILE PRO THR ALA ASP SEQRES 5 E 136 GLU LYS LYS LYS LEU GLU PRO VAL LEU LEU GLN SER LEU SEQRES 6 E 136 TYR ALA HIS LEU GLY SER LYS PRO THR SER ALA GLU VAL SEQRES 7 E 136 VAL LEU VAL ALA THR GLN VAL VAL ALA GLY THR ASN TYR SEQRES 8 E 136 PHE ALA LYS VAL LYS VAL ASN ASN ASP HIS TYR ILE HIS SEQRES 9 E 136 THR ARG VAL TYR GLU GLN LEU PRO CYS TYR GLY GLY ALA SEQRES 10 E 136 LEU GLU LEU HIS SER VAL GLN MET ASN LYS THR ASP THR SEQRES 11 E 136 ASP PRO LEU ASP TYR PHE SEQRES 1 F 136 MET THR SER THR ARG LEU ALA PHE ALA TRP ARG GLU LEU SEQRES 2 F 136 PHE SER VAL PHE CYS TYR LEU LEU TYR THR SER ASP ILE SEQRES 3 F 136 LEU ALA GLU ARG HIS ASN ASN HIS PRO VAL MET PRO ILE SEQRES 4 F 136 CYS GLY GLY ILE SER ALA ALA ARG ILE PRO THR ALA ASP SEQRES 5 F 136 GLU LYS LYS LYS LEU GLU PRO VAL LEU LEU GLN SER LEU SEQRES 6 F 136 TYR ALA HIS LEU GLY SER LYS PRO THR SER ALA GLU VAL SEQRES 7 F 136 VAL LEU VAL ALA THR GLN VAL VAL ALA GLY THR ASN TYR SEQRES 8 F 136 PHE ALA LYS VAL LYS VAL ASN ASN ASP HIS TYR ILE HIS SEQRES 9 F 136 THR ARG VAL TYR GLU GLN LEU PRO CYS TYR GLY GLY ALA SEQRES 10 F 136 LEU GLU LEU HIS SER VAL GLN MET ASN LYS THR ASP THR SEQRES 11 F 136 ASP PRO LEU ASP TYR PHE FORMUL 7 HOH *141(H2 O) HELIX 1 AA1 THR A 50 LEU A 65 1 16 HELIX 2 AA2 LEU A 65 GLY A 70 1 6 HELIX 3 AA3 LEU A 111 GLY A 115 5 5 HELIX 4 AA4 THR B 50 LEU B 65 1 16 HELIX 5 AA5 LEU B 65 GLY B 70 1 6 HELIX 6 AA6 LEU B 111 GLY B 115 5 5 HELIX 7 AA7 THR C 50 GLN C 63 1 14 HELIX 8 AA8 LEU C 65 GLY C 70 1 6 HELIX 9 AA9 LEU C 111 GLY C 115 5 5 HELIX 10 AB1 THR D 50 GLY D 70 1 21 HELIX 11 AB2 LEU D 111 GLY D 115 5 5 HELIX 12 AB3 THR E 50 LEU E 65 1 16 HELIX 13 AB4 LEU E 65 GLY E 70 1 6 HELIX 14 AB5 LEU E 111 GLY E 115 5 5 HELIX 15 AB6 THR F 50 GLY F 70 1 21 HELIX 16 AB7 LEU F 111 GLY F 115 5 5 SHEET 1 AA1 4 ALA A 76 VAL A 85 0 SHEET 2 AA1 4 THR A 89 VAL A 97 -1 O PHE A 92 N ALA A 82 SHEET 3 AA1 4 HIS A 101 GLU A 109 -1 O VAL A 107 N TYR A 91 SHEET 4 AA1 4 LEU A 118 LYS A 127 -1 O HIS A 121 N ARG A 106 SHEET 1 AA2 4 ALA B 76 VAL B 85 0 SHEET 2 AA2 4 THR B 89 VAL B 97 -1 O PHE B 92 N ALA B 82 SHEET 3 AA2 4 HIS B 101 GLU B 109 -1 O VAL B 107 N TYR B 91 SHEET 4 AA2 4 LEU B 118 LYS B 127 -1 O GLN B 124 N HIS B 104 SHEET 1 AA3 4 GLU C 77 VAL C 85 0 SHEET 2 AA3 4 THR C 89 LYS C 96 -1 O PHE C 92 N ALA C 82 SHEET 3 AA3 4 TYR C 102 GLU C 109 -1 O ILE C 103 N VAL C 95 SHEET 4 AA3 4 LEU C 118 LYS C 127 -1 O GLN C 124 N HIS C 104 SHEET 1 AA4 3 ALA D 76 VAL D 78 0 SHEET 2 AA4 3 THR D 89 VAL D 97 -1 O LYS D 96 N GLU D 77 SHEET 3 AA4 3 THR D 83 VAL D 85 -1 N GLN D 84 O ASN D 90 SHEET 1 AA5 4 ALA D 76 VAL D 78 0 SHEET 2 AA5 4 THR D 89 VAL D 97 -1 O LYS D 96 N GLU D 77 SHEET 3 AA5 4 HIS D 101 GLU D 109 -1 O VAL D 107 N TYR D 91 SHEET 4 AA5 4 LEU D 118 LYS D 127 -1 O HIS D 121 N ARG D 106 SHEET 1 AA6 4 ALA E 76 VAL E 85 0 SHEET 2 AA6 4 THR E 89 VAL E 97 -1 O LYS E 96 N GLU E 77 SHEET 3 AA6 4 HIS E 101 GLU E 109 -1 O VAL E 107 N TYR E 91 SHEET 4 AA6 4 LEU E 118 LYS E 127 -1 O GLN E 124 N HIS E 104 SHEET 1 AA7 4 ALA F 76 VAL F 85 0 SHEET 2 AA7 4 THR F 89 VAL F 97 -1 O PHE F 92 N ALA F 82 SHEET 3 AA7 4 TYR F 102 GLU F 109 -1 O ILE F 103 N VAL F 95 SHEET 4 AA7 4 LEU F 118 LYS F 127 -1 O GLN F 124 N HIS F 104 SSBOND 1 CYS A 40 CYS C 113 1555 1455 2.05 SSBOND 2 CYS A 113 CYS C 40 1555 1455 2.04 SSBOND 3 CYS B 40 CYS D 113 1555 1655 2.07 SSBOND 4 CYS E 113 CYS F 40 1555 1455 2.05 CRYST1 62.450 56.996 101.134 90.00 99.06 90.00 P 1 21 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016013 0.000000 0.002553 0.00000 SCALE2 0.000000 0.017545 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010013 0.00000