data_5ZC6 # _entry.id 5ZC6 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.296 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 5ZC6 WWPDB D_1300006648 BMRB 36166 # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type BMRB . 18629 unspecified PDB . 2LWI unspecified BMRB . 17610 unspecified PDB . 2LCF unspecified BMRB 'Solution structure of H-RasT35S mutant protein in complex with KBFM123' 36166 unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.entry_id 5ZC6 _pdbx_database_status.recvd_initial_deposition_date 2018-02-15 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Matsumoto, S.' 1 ? 'Hayashi, Y.' 2 ? 'Hiraga, T.' 3 ? 'Matsuo, K.' 4 ? 'Kataoka, T.' 5 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Biochemistry _citation.journal_id_ASTM BICHAW _citation.journal_id_CSD 0033 _citation.journal_id_ISSN 1520-4995 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 57 _citation.language ? _citation.page_first 5350 _citation.page_last 5358 _citation.title 'Molecular Basis for Allosteric Inhibition of GTP-Bound H-Ras Protein by a Small-Molecule Compound Carrying a Naphthalene Ring' _citation.year 2018 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1021/acs.biochem.8b00680 _citation.pdbx_database_id_PubMed 30141910 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Matsumoto, S.' 1 0000-0001-9329-6362 primary 'Hiraga, T.' 2 ? primary 'Hayashi, Y.' 3 ? primary 'Yoshikawa, Y.' 4 ? primary 'Tsuda, C.' 5 ? primary 'Araki, M.' 6 ? primary 'Neya, M.' 7 ? primary 'Shima, F.' 8 ? primary 'Kataoka, T.' 9 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'GTPase HRas' 18861.166 1 ? T35S 'UNP residues 1-166' ? 2 non-polymer syn 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' 522.196 1 ? ? ? ? 3 non-polymer syn '3-oxidanyl-~{N}-[[(2~{R})-oxolan-2-yl]methyl]naphthalene-2-carboxamide' 271.311 1 ? ? ? ? 4 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'H-Ras-1,Ha-Ras,Transforming protein p21,c-H-ras,p21ras' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPSIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV REIRQH ; _entity_poly.pdbx_seq_one_letter_code_can ;MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPSIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV REIRQH ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 THR n 1 3 GLU n 1 4 TYR n 1 5 LYS n 1 6 LEU n 1 7 VAL n 1 8 VAL n 1 9 VAL n 1 10 GLY n 1 11 ALA n 1 12 GLY n 1 13 GLY n 1 14 VAL n 1 15 GLY n 1 16 LYS n 1 17 SER n 1 18 ALA n 1 19 LEU n 1 20 THR n 1 21 ILE n 1 22 GLN n 1 23 LEU n 1 24 ILE n 1 25 GLN n 1 26 ASN n 1 27 HIS n 1 28 PHE n 1 29 VAL n 1 30 ASP n 1 31 GLU n 1 32 TYR n 1 33 ASP n 1 34 PRO n 1 35 SER n 1 36 ILE n 1 37 GLU n 1 38 ASP n 1 39 SER n 1 40 TYR n 1 41 ARG n 1 42 LYS n 1 43 GLN n 1 44 VAL n 1 45 VAL n 1 46 ILE n 1 47 ASP n 1 48 GLY n 1 49 GLU n 1 50 THR n 1 51 CYS n 1 52 LEU n 1 53 LEU n 1 54 ASP n 1 55 ILE n 1 56 LEU n 1 57 ASP n 1 58 THR n 1 59 ALA n 1 60 GLY n 1 61 GLN n 1 62 GLU n 1 63 GLU n 1 64 TYR n 1 65 SER n 1 66 ALA n 1 67 MET n 1 68 ARG n 1 69 ASP n 1 70 GLN n 1 71 TYR n 1 72 MET n 1 73 ARG n 1 74 THR n 1 75 GLY n 1 76 GLU n 1 77 GLY n 1 78 PHE n 1 79 LEU n 1 80 CYS n 1 81 VAL n 1 82 PHE n 1 83 ALA n 1 84 ILE n 1 85 ASN n 1 86 ASN n 1 87 THR n 1 88 LYS n 1 89 SER n 1 90 PHE n 1 91 GLU n 1 92 ASP n 1 93 ILE n 1 94 HIS n 1 95 GLN n 1 96 TYR n 1 97 ARG n 1 98 GLU n 1 99 GLN n 1 100 ILE n 1 101 LYS n 1 102 ARG n 1 103 VAL n 1 104 LYS n 1 105 ASP n 1 106 SER n 1 107 ASP n 1 108 ASP n 1 109 VAL n 1 110 PRO n 1 111 MET n 1 112 VAL n 1 113 LEU n 1 114 VAL n 1 115 GLY n 1 116 ASN n 1 117 LYS n 1 118 CYS n 1 119 ASP n 1 120 LEU n 1 121 ALA n 1 122 ALA n 1 123 ARG n 1 124 THR n 1 125 VAL n 1 126 GLU n 1 127 SER n 1 128 ARG n 1 129 GLN n 1 130 ALA n 1 131 GLN n 1 132 ASP n 1 133 LEU n 1 134 ALA n 1 135 ARG n 1 136 SER n 1 137 TYR n 1 138 GLY n 1 139 ILE n 1 140 PRO n 1 141 TYR n 1 142 ILE n 1 143 GLU n 1 144 THR n 1 145 SER n 1 146 ALA n 1 147 LYS n 1 148 THR n 1 149 ARG n 1 150 GLN n 1 151 GLY n 1 152 VAL n 1 153 GLU n 1 154 ASP n 1 155 ALA n 1 156 PHE n 1 157 TYR n 1 158 THR n 1 159 LEU n 1 160 VAL n 1 161 ARG n 1 162 GLU n 1 163 ILE n 1 164 ARG n 1 165 GLN n 1 166 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 166 _entity_src_gen.gene_src_common_name Human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'HRAS, HRAS1' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code RASH_HUMAN _struct_ref.pdbx_db_accession P01112 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV REIRQH ; _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 5ZC6 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 166 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P01112 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 166 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 166 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 5ZC6 _struct_ref_seq_dif.mon_id SER _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 35 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code P01112 _struct_ref_seq_dif.db_mon_id THR _struct_ref_seq_dif.pdbx_seq_db_seq_num 35 _struct_ref_seq_dif.details 'engineered mutation' _struct_ref_seq_dif.pdbx_auth_seq_num 35 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GNP non-polymer . 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' ? 'C10 H17 N6 O13 P3' 522.196 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 KBF non-polymer . '3-oxidanyl-~{N}-[[(2~{R})-oxolan-2-yl]methyl]naphthalene-2-carboxamide' '3-hydroxy-N-(tetrahydrofuran-2-ylmethyl)naphthalene-2-carboxamide' 'C16 H17 N O3' 271.311 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 1 1 '2D 1H-1H NOESY' 1 isotropic 2 1 1 '3D 1H-13C NOESY' 1 isotropic 3 1 1 '2D 1H-13C HSQC aliphatic' 1 isotropic # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 278 _pdbx_nmr_exptl_sample_conditions.pressure_units Pa _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 6.8 _pdbx_nmr_exptl_sample_conditions.ionic_strength 50 _pdbx_nmr_exptl_sample_conditions.details ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_err ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_units mM _pdbx_nmr_exptl_sample_conditions.label conditions_1 _pdbx_nmr_exptl_sample_conditions.pH_err ? _pdbx_nmr_exptl_sample_conditions.pH_units pH _pdbx_nmr_exptl_sample_conditions.pressure_err ? _pdbx_nmr_exptl_sample_conditions.temperature_err ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents ;0.8 mM [U-99% 13C; U-99% 15N] H-RasT35S, 3.0 mM KBFM123, 20 mM sodium phosphate, 40 mM sodium chloride, 8 mM MAGNESIUM ION, 0.8 mM PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER, 80% D2O/20% d6-DMSO ; _pdbx_nmr_sample_details.solvent_system '80% D2O/20% d6-DMSO' _pdbx_nmr_sample_details.label sample_1 _pdbx_nmr_sample_details.type solution _pdbx_nmr_sample_details.details ? # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model AvanceIII _pdbx_nmr_spectrometer.type ? _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 600 _pdbx_nmr_spectrometer.details ? # _pdbx_nmr_refine.details ? _pdbx_nmr_refine.entry_id 5ZC6 _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 5ZC6 _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 15 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 5ZC6 _pdbx_nmr_representative.selection_criteria 'lowest energy' # _pdbx_nmr_software.classification refinement _pdbx_nmr_software.name CNS _pdbx_nmr_software.version ? _pdbx_nmr_software.authors 'BRUNGER A. T. ET.AL.' _pdbx_nmr_software.ordinal 1 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5ZC6 _exptl.crystals_number ? _exptl.details ? _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 5ZC6 _struct.title 'Solution structure of H-RasT35S mutant protein in complex with KBFM123' _struct.pdbx_descriptor 'GTPase HRas' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5ZC6 _struct_keywords.text 'Inhibitor, Complex, Cancer, Small GTPases, ONCOPROTEIN' _struct_keywords.pdbx_keywords ONCOPROTEIN # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 GLY A 15 ? GLN A 25 ? GLY A 15 GLN A 25 1 ? 11 HELX_P HELX_P2 AA2 SER A 65 ? GLY A 75 ? SER A 65 GLY A 75 1 ? 11 HELX_P HELX_P3 AA3 ASN A 86 ? ASP A 105 ? ASN A 86 ASP A 105 1 ? 20 HELX_P HELX_P4 AA4 GLU A 126 ? SER A 136 ? GLU A 126 SER A 136 1 ? 11 HELX_P HELX_P5 AA5 GLY A 151 ? HIS A 166 ? GLY A 151 HIS A 166 1 ? 16 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc1 metalc ? ? A SER 17 OG ? ? ? 1_555 D MG . MG ? ? A SER 17 A MG 203 1_555 ? ? ? ? ? ? ? 2.227 ? metalc2 metalc ? ? B GNP . O1G ? ? ? 1_555 D MG . MG ? ? A GNP 201 A MG 203 1_555 ? ? ? ? ? ? ? 2.036 ? metalc3 metalc ? ? B GNP . O2B ? ? ? 1_555 D MG . MG ? ? A GNP 201 A MG 203 1_555 ? ? ? ? ? ? ? 2.153 ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id AA1 _struct_sheet.type ? _struct_sheet.number_strands 6 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? parallel AA1 3 4 ? parallel AA1 4 5 ? parallel AA1 5 6 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 GLN A 43 ? ILE A 46 ? GLN A 43 ILE A 46 AA1 2 GLU A 49 ? ASP A 57 ? GLU A 49 ASP A 57 AA1 3 THR A 2 ? GLY A 10 ? THR A 2 GLY A 10 AA1 4 GLY A 77 ? ALA A 83 ? GLY A 77 ALA A 83 AA1 5 MET A 111 ? ASN A 116 ? MET A 111 ASN A 116 AA1 6 TYR A 141 ? GLU A 143 ? TYR A 141 GLU A 143 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N VAL A 44 ? N VAL A 44 O CYS A 51 ? O CYS A 51 AA1 2 3 O LEU A 56 ? O LEU A 56 N LEU A 6 ? N LEU A 6 AA1 3 4 N VAL A 7 ? N VAL A 7 O GLY A 77 ? O GLY A 77 AA1 4 5 N CYS A 80 ? N CYS A 80 O VAL A 114 ? O VAL A 114 AA1 5 6 N LEU A 113 ? N LEU A 113 O ILE A 142 ? O ILE A 142 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A GNP 201 ? 13 'binding site for residue GNP A 201' AC2 Software A KBF 202 ? 5 'binding site for residue KBF A 202' AC3 Software A MG 203 ? 2 'binding site for residue MG A 203' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 13 GLY A 12 ? GLY A 12 . ? 1_555 ? 2 AC1 13 VAL A 14 ? VAL A 14 . ? 1_555 ? 3 AC1 13 LYS A 16 ? LYS A 16 . ? 1_555 ? 4 AC1 13 SER A 17 ? SER A 17 . ? 1_555 ? 5 AC1 13 PHE A 28 ? PHE A 28 . ? 1_555 ? 6 AC1 13 VAL A 29 ? VAL A 29 . ? 1_555 ? 7 AC1 13 ASP A 30 ? ASP A 30 . ? 1_555 ? 8 AC1 13 ASN A 116 ? ASN A 116 . ? 1_555 ? 9 AC1 13 LYS A 117 ? LYS A 117 . ? 1_555 ? 10 AC1 13 LEU A 120 ? LEU A 120 . ? 1_555 ? 11 AC1 13 ALA A 146 ? ALA A 146 . ? 1_555 ? 12 AC1 13 LYS A 147 ? LYS A 147 . ? 1_555 ? 13 AC1 13 MG D . ? MG A 203 . ? 1_555 ? 14 AC2 5 LYS A 5 ? LYS A 5 . ? 1_555 ? 15 AC2 5 ASP A 38 ? ASP A 38 . ? 1_555 ? 16 AC2 5 LEU A 56 ? LEU A 56 . ? 1_555 ? 17 AC2 5 TYR A 71 ? TYR A 71 . ? 1_555 ? 18 AC2 5 THR A 74 ? THR A 74 . ? 1_555 ? 19 AC3 2 SER A 17 ? SER A 17 . ? 1_555 ? 20 AC3 2 GNP B . ? GNP A 201 . ? 1_555 ? # _atom_sites.entry_id 5ZC6 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H MG N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 1 MET MET A . n A 1 2 THR 2 2 2 THR THR A . n A 1 3 GLU 3 3 3 GLU GLU A . n A 1 4 TYR 4 4 4 TYR TYR A . n A 1 5 LYS 5 5 5 LYS LYS A . n A 1 6 LEU 6 6 6 LEU LEU A . n A 1 7 VAL 7 7 7 VAL VAL A . n A 1 8 VAL 8 8 8 VAL VAL A . n A 1 9 VAL 9 9 9 VAL VAL A . n A 1 10 GLY 10 10 10 GLY GLY A . n A 1 11 ALA 11 11 11 ALA ALA A . n A 1 12 GLY 12 12 12 GLY GLY A . n A 1 13 GLY 13 13 13 GLY GLY A . n A 1 14 VAL 14 14 14 VAL VAL A . n A 1 15 GLY 15 15 15 GLY GLY A . n A 1 16 LYS 16 16 16 LYS LYS A . n A 1 17 SER 17 17 17 SER SER A . n A 1 18 ALA 18 18 18 ALA ALA A . n A 1 19 LEU 19 19 19 LEU LEU A . n A 1 20 THR 20 20 20 THR THR A . n A 1 21 ILE 21 21 21 ILE ILE A . n A 1 22 GLN 22 22 22 GLN GLN A . n A 1 23 LEU 23 23 23 LEU LEU A . n A 1 24 ILE 24 24 24 ILE ILE A . n A 1 25 GLN 25 25 25 GLN GLN A . n A 1 26 ASN 26 26 26 ASN ASN A . n A 1 27 HIS 27 27 27 HIS HIS A . n A 1 28 PHE 28 28 28 PHE PHE A . n A 1 29 VAL 29 29 29 VAL VAL A . n A 1 30 ASP 30 30 30 ASP ASP A . n A 1 31 GLU 31 31 31 GLU GLU A . n A 1 32 TYR 32 32 32 TYR TYR A . n A 1 33 ASP 33 33 33 ASP ASP A . n A 1 34 PRO 34 34 34 PRO PRO A . n A 1 35 SER 35 35 35 SER SER A . n A 1 36 ILE 36 36 36 ILE ILE A . n A 1 37 GLU 37 37 37 GLU GLU A . n A 1 38 ASP 38 38 38 ASP ASP A . n A 1 39 SER 39 39 39 SER SER A . n A 1 40 TYR 40 40 40 TYR TYR A . n A 1 41 ARG 41 41 41 ARG ARG A . n A 1 42 LYS 42 42 42 LYS LYS A . n A 1 43 GLN 43 43 43 GLN GLN A . n A 1 44 VAL 44 44 44 VAL VAL A . n A 1 45 VAL 45 45 45 VAL VAL A . n A 1 46 ILE 46 46 46 ILE ILE A . n A 1 47 ASP 47 47 47 ASP ASP A . n A 1 48 GLY 48 48 48 GLY GLY A . n A 1 49 GLU 49 49 49 GLU GLU A . n A 1 50 THR 50 50 50 THR THR A . n A 1 51 CYS 51 51 51 CYS CYS A . n A 1 52 LEU 52 52 52 LEU LEU A . n A 1 53 LEU 53 53 53 LEU LEU A . n A 1 54 ASP 54 54 54 ASP ASP A . n A 1 55 ILE 55 55 55 ILE ILE A . n A 1 56 LEU 56 56 56 LEU LEU A . n A 1 57 ASP 57 57 57 ASP ASP A . n A 1 58 THR 58 58 58 THR THR A . n A 1 59 ALA 59 59 59 ALA ALA A . n A 1 60 GLY 60 60 60 GLY GLY A . n A 1 61 GLN 61 61 61 GLN GLN A . n A 1 62 GLU 62 62 62 GLU GLU A . n A 1 63 GLU 63 63 63 GLU GLU A . n A 1 64 TYR 64 64 64 TYR TYR A . n A 1 65 SER 65 65 65 SER SER A . n A 1 66 ALA 66 66 66 ALA ALA A . n A 1 67 MET 67 67 67 MET MET A . n A 1 68 ARG 68 68 68 ARG ARG A . n A 1 69 ASP 69 69 69 ASP ASP A . n A 1 70 GLN 70 70 70 GLN GLN A . n A 1 71 TYR 71 71 71 TYR TYR A . n A 1 72 MET 72 72 72 MET MET A . n A 1 73 ARG 73 73 73 ARG ARG A . n A 1 74 THR 74 74 74 THR THR A . n A 1 75 GLY 75 75 75 GLY GLY A . n A 1 76 GLU 76 76 76 GLU GLU A . n A 1 77 GLY 77 77 77 GLY GLY A . n A 1 78 PHE 78 78 78 PHE PHE A . n A 1 79 LEU 79 79 79 LEU LEU A . n A 1 80 CYS 80 80 80 CYS CYS A . n A 1 81 VAL 81 81 81 VAL VAL A . n A 1 82 PHE 82 82 82 PHE PHE A . n A 1 83 ALA 83 83 83 ALA ALA A . n A 1 84 ILE 84 84 84 ILE ILE A . n A 1 85 ASN 85 85 85 ASN ASN A . n A 1 86 ASN 86 86 86 ASN ASN A . n A 1 87 THR 87 87 87 THR THR A . n A 1 88 LYS 88 88 88 LYS LYS A . n A 1 89 SER 89 89 89 SER SER A . n A 1 90 PHE 90 90 90 PHE PHE A . n A 1 91 GLU 91 91 91 GLU GLU A . n A 1 92 ASP 92 92 92 ASP ASP A . n A 1 93 ILE 93 93 93 ILE ILE A . n A 1 94 HIS 94 94 94 HIS HIS A . n A 1 95 GLN 95 95 95 GLN GLN A . n A 1 96 TYR 96 96 96 TYR TYR A . n A 1 97 ARG 97 97 97 ARG ARG A . n A 1 98 GLU 98 98 98 GLU GLU A . n A 1 99 GLN 99 99 99 GLN GLN A . n A 1 100 ILE 100 100 100 ILE ILE A . n A 1 101 LYS 101 101 101 LYS LYS A . n A 1 102 ARG 102 102 102 ARG ARG A . n A 1 103 VAL 103 103 103 VAL VAL A . n A 1 104 LYS 104 104 104 LYS LYS A . n A 1 105 ASP 105 105 105 ASP ASP A . n A 1 106 SER 106 106 106 SER SER A . n A 1 107 ASP 107 107 107 ASP ASP A . n A 1 108 ASP 108 108 108 ASP ASP A . n A 1 109 VAL 109 109 109 VAL VAL A . n A 1 110 PRO 110 110 110 PRO PRO A . n A 1 111 MET 111 111 111 MET MET A . n A 1 112 VAL 112 112 112 VAL VAL A . n A 1 113 LEU 113 113 113 LEU LEU A . n A 1 114 VAL 114 114 114 VAL VAL A . n A 1 115 GLY 115 115 115 GLY GLY A . n A 1 116 ASN 116 116 116 ASN ASN A . n A 1 117 LYS 117 117 117 LYS LYS A . n A 1 118 CYS 118 118 118 CYS CYS A . n A 1 119 ASP 119 119 119 ASP ASP A . n A 1 120 LEU 120 120 120 LEU LEU A . n A 1 121 ALA 121 121 121 ALA ALA A . n A 1 122 ALA 122 122 122 ALA ALA A . n A 1 123 ARG 123 123 123 ARG ARG A . n A 1 124 THR 124 124 124 THR THR A . n A 1 125 VAL 125 125 125 VAL VAL A . n A 1 126 GLU 126 126 126 GLU GLU A . n A 1 127 SER 127 127 127 SER SER A . n A 1 128 ARG 128 128 128 ARG ARG A . n A 1 129 GLN 129 129 129 GLN GLN A . n A 1 130 ALA 130 130 130 ALA ALA A . n A 1 131 GLN 131 131 131 GLN GLN A . n A 1 132 ASP 132 132 132 ASP ASP A . n A 1 133 LEU 133 133 133 LEU LEU A . n A 1 134 ALA 134 134 134 ALA ALA A . n A 1 135 ARG 135 135 135 ARG ARG A . n A 1 136 SER 136 136 136 SER SER A . n A 1 137 TYR 137 137 137 TYR TYR A . n A 1 138 GLY 138 138 138 GLY GLY A . n A 1 139 ILE 139 139 139 ILE ILE A . n A 1 140 PRO 140 140 140 PRO PRO A . n A 1 141 TYR 141 141 141 TYR TYR A . n A 1 142 ILE 142 142 142 ILE ILE A . n A 1 143 GLU 143 143 143 GLU GLU A . n A 1 144 THR 144 144 144 THR THR A . n A 1 145 SER 145 145 145 SER SER A . n A 1 146 ALA 146 146 146 ALA ALA A . n A 1 147 LYS 147 147 147 LYS LYS A . n A 1 148 THR 148 148 148 THR THR A . n A 1 149 ARG 149 149 149 ARG ARG A . n A 1 150 GLN 150 150 150 GLN GLN A . n A 1 151 GLY 151 151 151 GLY GLY A . n A 1 152 VAL 152 152 152 VAL VAL A . n A 1 153 GLU 153 153 153 GLU GLU A . n A 1 154 ASP 154 154 154 ASP ASP A . n A 1 155 ALA 155 155 155 ALA ALA A . n A 1 156 PHE 156 156 156 PHE PHE A . n A 1 157 TYR 157 157 157 TYR TYR A . n A 1 158 THR 158 158 158 THR THR A . n A 1 159 LEU 159 159 159 LEU LEU A . n A 1 160 VAL 160 160 160 VAL VAL A . n A 1 161 ARG 161 161 161 ARG ARG A . n A 1 162 GLU 162 162 162 GLU GLU A . n A 1 163 ILE 163 163 163 ILE ILE A . n A 1 164 ARG 164 164 164 ARG ARG A . n A 1 165 GLN 165 165 165 GLN GLN A . n A 1 166 HIS 166 166 166 HIS HIS A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GNP 1 201 201 GNP GNP A . C 3 KBF 1 202 202 KBF KBF A . D 4 MG 1 203 203 MG MG A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 860 ? 1 MORE -12 ? 1 'SSA (A^2)' 8440 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OG ? A SER 17 ? A SER 17 ? 1_555 MG ? D MG . ? A MG 203 ? 1_555 O1G ? B GNP . ? A GNP 201 ? 1_555 177.3 ? 2 OG ? A SER 17 ? A SER 17 ? 1_555 MG ? D MG . ? A MG 203 ? 1_555 O2B ? B GNP . ? A GNP 201 ? 1_555 90.6 ? 3 O1G ? B GNP . ? A GNP 201 ? 1_555 MG ? D MG . ? A MG 203 ? 1_555 O2B ? B GNP . ? A GNP 201 ? 1_555 88.2 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2018-09-12 2 'Structure model' 1 1 2018-09-26 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 2 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category citation # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.page_first' 3 2 'Structure model' '_citation.page_last' # loop_ _pdbx_nmr_exptl_sample.solution_id _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling 1 H-RasT35S 0.8 ? mM '[U-99% 13C; U-99% 15N]' 1 KBFM123 3.0 ? mM 'natural abundance' 1 'sodium phosphate' 20 ? mM 'natural abundance' 1 'sodium chloride' 40 ? mM 'natural abundance' 1 'MAGNESIUM ION' 8 ? mM 'natural abundance' 1 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' 0.8 ? mM 'natural abundance' # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 9 O A TYR 64 ? ? H A ARG 68 ? ? 1.51 2 12 O A TYR 64 ? ? H A ARG 68 ? ? 1.51 3 14 O A LEU 6 ? ? H A LEU 56 ? ? 1.58 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ALA A 11 ? ? -59.70 -77.49 2 1 VAL A 29 ? ? -60.33 -163.65 3 1 ASP A 30 ? ? 75.07 32.69 4 1 GLU A 31 ? ? -172.20 32.34 5 1 ASP A 38 ? ? 89.03 -29.27 6 1 GLN A 61 ? ? -108.47 46.77 7 1 GLU A 62 ? ? -141.58 11.74 8 1 GLU A 63 ? ? 46.65 29.45 9 1 SER A 65 ? ? -128.65 -54.41 10 1 GLU A 76 ? ? -93.67 -67.92 11 1 ASP A 107 ? ? -126.00 -51.28 12 1 LEU A 120 ? ? -65.39 -85.52 13 1 ALA A 121 ? ? 165.16 -46.53 14 2 ALA A 11 ? ? -68.32 -167.24 15 2 VAL A 14 ? ? 44.02 28.05 16 2 VAL A 29 ? ? -62.90 -161.67 17 2 ASP A 30 ? ? 86.99 -48.77 18 2 SER A 35 ? ? 79.79 -62.49 19 2 ASP A 38 ? ? 67.04 -68.26 20 2 GLN A 61 ? ? -106.03 -151.99 21 2 GLU A 62 ? ? 78.20 -172.82 22 2 GLU A 63 ? ? -97.96 30.41 23 2 SER A 65 ? ? -178.09 -43.24 24 2 GLU A 76 ? ? -97.23 -68.97 25 2 SER A 106 ? ? -139.77 -94.18 26 2 ASP A 107 ? ? 158.80 -66.28 27 2 LEU A 120 ? ? -56.66 -178.04 28 3 VAL A 29 ? ? -59.46 -159.47 29 3 ASP A 30 ? ? 82.44 -0.74 30 3 ASP A 38 ? ? 84.30 -23.08 31 3 GLU A 63 ? ? 61.01 100.80 32 3 ASP A 105 ? ? 37.68 47.58 33 3 ASP A 107 ? ? 75.35 -58.31 34 3 LEU A 120 ? ? -68.68 -84.03 35 3 ALA A 121 ? ? 168.99 -39.71 36 4 VAL A 29 ? ? -56.59 -166.28 37 4 ASP A 30 ? ? 87.97 -42.52 38 4 ASP A 38 ? ? 80.64 -2.50 39 4 GLU A 63 ? ? 70.15 94.00 40 4 SER A 65 ? ? -142.89 -57.35 41 4 LEU A 120 ? ? -55.84 -172.08 42 4 ALA A 122 ? ? -158.52 64.83 43 5 ALA A 11 ? ? 171.01 -171.19 44 5 VAL A 14 ? ? -139.74 -47.44 45 5 VAL A 29 ? ? -48.35 159.46 46 5 ASP A 30 ? ? 113.41 44.50 47 5 GLU A 31 ? ? -171.14 -42.47 48 5 SER A 35 ? ? 78.22 -2.16 49 5 GLU A 62 ? ? -176.85 148.85 50 5 GLU A 63 ? ? -65.04 78.10 51 5 ASP A 107 ? ? -124.08 -61.86 52 5 LEU A 120 ? ? -58.67 177.31 53 5 ALA A 121 ? ? -107.40 58.68 54 5 ALA A 122 ? ? -168.78 92.01 55 5 ARG A 149 ? ? 84.49 -17.33 56 6 ALA A 11 ? ? -79.22 -157.65 57 6 VAL A 29 ? ? -56.37 -164.37 58 6 SER A 35 ? ? 81.19 -52.25 59 6 ASP A 38 ? ? 68.50 -65.80 60 6 GLN A 61 ? ? 60.64 95.32 61 6 GLU A 62 ? ? -176.68 36.72 62 6 TYR A 64 ? ? -114.85 73.68 63 6 GLU A 76 ? ? -90.50 -66.82 64 6 ASP A 107 ? ? -104.76 -69.99 65 6 LYS A 117 ? ? 86.15 90.05 66 6 ALA A 121 ? ? -102.38 74.15 67 6 ALA A 122 ? ? -163.63 34.73 68 7 VAL A 29 ? ? -57.80 -159.50 69 7 GLU A 31 ? ? -154.61 28.15 70 7 SER A 35 ? ? 80.04 -7.13 71 7 ASP A 38 ? ? 77.36 -2.82 72 7 GLN A 61 ? ? -158.71 -79.60 73 7 LEU A 120 ? ? -70.74 -78.08 74 7 ALA A 121 ? ? 165.32 -37.52 75 8 ALA A 11 ? ? -102.48 -162.06 76 8 VAL A 29 ? ? -63.05 -170.49 77 8 ASP A 30 ? ? 95.37 -20.31 78 8 ASP A 38 ? ? 84.37 -45.87 79 8 GLU A 63 ? ? -64.56 98.78 80 8 SER A 65 ? ? -149.36 -54.66 81 8 GLU A 76 ? ? -89.81 -71.15 82 8 ASP A 107 ? ? 70.26 -68.09 83 8 LYS A 117 ? ? 86.20 27.25 84 8 LEU A 120 ? ? -65.81 -170.92 85 9 ALA A 11 ? ? -177.93 -163.35 86 9 VAL A 14 ? ? -138.73 -44.48 87 9 VAL A 29 ? ? -56.80 -161.34 88 9 GLU A 31 ? ? -142.30 12.37 89 9 SER A 35 ? ? 82.30 -11.39 90 9 ASP A 38 ? ? 74.73 -58.49 91 9 GLN A 61 ? ? -146.95 -42.20 92 9 GLU A 62 ? ? -56.13 -169.66 93 9 GLU A 63 ? ? -53.43 94.29 94 9 TYR A 64 ? ? -99.07 -65.70 95 9 SER A 65 ? ? -35.14 -38.13 96 9 ASP A 107 ? ? 81.01 -45.29 97 9 LEU A 120 ? ? -57.77 -178.62 98 9 ALA A 121 ? ? -103.71 40.09 99 10 VAL A 29 ? ? -61.85 -158.91 100 10 GLU A 31 ? ? -152.54 26.95 101 10 SER A 35 ? ? 84.72 -21.94 102 10 ASP A 38 ? ? 69.01 -65.78 103 10 GLN A 61 ? ? -146.54 -54.28 104 10 GLU A 62 ? ? -69.06 -167.44 105 10 GLU A 63 ? ? -96.33 41.21 106 10 SER A 65 ? ? -144.55 -47.69 107 10 ASP A 105 ? ? 36.09 40.75 108 10 ASP A 107 ? ? 69.64 -67.44 109 10 LYS A 117 ? ? 70.55 42.26 110 10 LEU A 120 ? ? -53.64 -176.07 111 10 ALA A 122 ? ? -165.73 87.70 112 11 ALA A 11 ? ? -170.96 -165.42 113 11 ASN A 26 ? ? 49.05 28.11 114 11 VAL A 29 ? ? -55.17 -164.33 115 11 ASP A 30 ? ? 76.03 50.38 116 11 GLU A 31 ? ? 176.79 -29.72 117 11 SER A 35 ? ? 85.24 -39.45 118 11 GLU A 37 ? ? -121.36 -63.28 119 11 GLN A 61 ? ? 63.76 -79.24 120 11 GLU A 62 ? ? 41.25 29.44 121 11 TYR A 64 ? ? -52.87 -80.71 122 11 SER A 65 ? ? 69.21 -64.02 123 11 GLU A 76 ? ? -101.00 -69.35 124 11 ASP A 107 ? ? -130.11 -48.58 125 11 ALA A 122 ? ? -108.75 50.83 126 12 VAL A 14 ? ? -148.51 -45.18 127 12 VAL A 29 ? ? -62.08 -160.95 128 12 ASP A 30 ? ? 75.02 57.66 129 12 GLU A 31 ? ? 172.66 -30.37 130 12 SER A 35 ? ? 82.51 -6.90 131 12 GLU A 37 ? ? -121.55 -50.50 132 12 ASP A 38 ? ? 77.81 -1.27 133 12 GLN A 61 ? ? -102.67 65.35 134 12 GLU A 62 ? ? -179.59 -34.36 135 12 GLU A 63 ? ? 72.09 104.93 136 12 TYR A 64 ? ? -97.50 36.12 137 12 SER A 106 ? ? -124.82 -167.94 138 12 ASP A 107 ? ? -126.50 -52.39 139 12 LEU A 120 ? ? -52.94 172.11 140 12 ALA A 122 ? ? -160.28 66.81 141 13 ALA A 11 ? ? -63.72 -164.77 142 13 VAL A 29 ? ? -61.60 -154.69 143 13 ASP A 30 ? ? 74.87 56.24 144 13 GLU A 31 ? ? 168.70 -25.08 145 13 GLU A 37 ? ? -102.13 -64.11 146 13 ASP A 38 ? ? 156.76 -51.90 147 13 GLN A 61 ? ? -120.26 -99.72 148 13 GLU A 63 ? ? 60.51 72.95 149 13 SER A 65 ? ? -170.57 -48.46 150 13 GLU A 76 ? ? -95.74 -67.74 151 13 SER A 106 ? ? -125.26 -169.65 152 13 ASP A 107 ? ? -123.44 -58.44 153 13 LEU A 120 ? ? -69.39 -82.35 154 13 ALA A 121 ? ? 164.76 -44.53 155 14 ALA A 11 ? ? -63.68 -164.06 156 14 VAL A 29 ? ? -58.01 -164.68 157 14 SER A 35 ? ? 82.51 -12.59 158 14 ASP A 38 ? ? 70.22 -64.96 159 14 GLN A 61 ? ? -145.52 40.75 160 14 GLU A 62 ? ? -149.26 21.12 161 14 SER A 65 ? ? -168.86 -47.52 162 14 GLU A 76 ? ? -100.49 -69.80 163 14 ASP A 107 ? ? -129.78 -52.33 164 14 LEU A 120 ? ? -57.25 176.41 165 15 VAL A 29 ? ? -58.25 -164.07 166 15 ASP A 30 ? ? 83.62 -47.01 167 15 GLU A 31 ? ? -95.28 36.94 168 15 SER A 35 ? ? 79.05 -6.00 169 15 ASP A 38 ? ? 77.22 -58.65 170 15 GLN A 61 ? ? 61.53 -81.27 171 15 GLU A 62 ? ? 47.21 -89.33 172 15 GLU A 63 ? ? -174.03 36.00 173 15 SER A 65 ? ? -177.96 -39.68 174 15 ASP A 107 ? ? -124.30 -54.94 175 15 LEU A 120 ? ? -58.45 -112.71 176 15 ALA A 121 ? ? -170.16 24.24 177 15 ALA A 122 ? ? -174.95 78.71 # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'the Ministry of Health, Labor and Welfare and Japan Agency for Medical Research and Development' Japan 15ak0101006h0005 1 'the National Institute of Biomedical Innovation and Japan Agency for Medical Research and Development' Japan 15nk0101401h0002 2 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' GNP 3 '3-oxidanyl-~{N}-[[(2~{R})-oxolan-2-yl]methyl]naphthalene-2-carboxamide' KBF 4 'MAGNESIUM ION' MG # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details ? #